Molecular in vitro diagnosis of breast cancer

ABSTRACT

A method for determining the benign or malignant state of a breast tumor in a biological sample is presented. The benign or malignant state is determined by measuring the variation of expression of twelve genes and at least one variant of each of the twelve genes when the variants exist, using a combination of 50 polynucleotide probe sets. An expression profile of the sample is then compared with reference expression profiles of control benign and malignant breast tissues. The probe sets can be arranged in a microarray.

The present invention describes a molecular in vitro diagnosis of breast cancers. More particularly, the invention relates to the use of molecular probes for the diagnosis evaluation of breast tumors.

Breast Cancer is the most frequent cancer in women in western countries (40 000 new cases in France/year). Although several advances have been achieved in the last 10 years the mortality rates remain high (11 000 death/year in France). There is therefore a need for a new generation of advances in this disease. Two axes have allowed improvement of breast cancer survival rates: i. an earlier and more accurate diagnosis, ii. the development of adjuvant therapies.

Breast Cancer diagnosis is currently performed in a vast majority of cases by a preoperative core needle biopsy. This exam is currently considered as a level 1 recommendation in France (www.has-sante.fr). In selected centers that are experts in this field, a fine needle aspiration is used to perform breast cancer diagnosis. Overall, the preoperative diagnosis of breast cancer is currently allowed by microscopic assessment of samples obtained either fine needle aspiration (FNA) or core needle biopsy (CNB). Each of this approach presents some limitations that hamper the quality of care in patients who present a breast lesion. FNA is associated with an unacceptable rate of misdiagnosis. The rate of uncertain diagnosis is indeed around 30% (Oyama T, Koibuchi Y, McKee G. Core needle biopsy (CNB) as a diagnostic method for breast lesions: comparison with fine needle aspiration cytology (FNA). Breast Cancer. 2004; 11(4):339-42; Orell S R, Farshid G. False-positive reports in fine needle biopsy of breast lesions. Pathology. 2001 November; 33(4):428-36; Meunier M, Clough K. Fine needle aspiration cytology versus percutaneous biopsy of nonpalpable breast lesions. Eur J Radiol. 2002 April; 42(1):10-6). CNB exhibits better performance for diagnosis but is associated with some major limitations. First, since CNB is a complex procedure, the appointments are usually given several weeks after detection of breast lesions. This induces a delayed diagnosis and therefore treatment. With the increase of mass screening, this delay will probably increase over time. Second, the CNB is associated with clinical side effects. The rate of hematoma related to the procedure indeed range between 0.6 and 4% (Barreau B, Tastet S, Lakdja F, Henriques C, Valentin F, Labat M J, Dilhuydy M H. [Patients' information in percutaneous core breast biopsy] Bull Cancer. 2005 March; 92(3):257-65). In addition, CNB is associated is a more painful procedure as compared to FNA. Finally, CNB is an expensive procedure for a frequent disease (200 Euros/procedure). Overall, from these considerations rises the need for a diagnostic test performed on FNA samples that would be accurate, quick and cost-saving. This test could either substitute cytological exam of FNA sample or be performed in complement to this one. This test would allow an earlier, safer and cost-saving diagnosis procedure.

Regarding mass screening, mammogram is currently considered as the gold standard for mass screening. Nevertheless, this approach is limited by a high rate of false negative results, especially in young women and in aggressive tumors. In addition, mammogram is limited by the fact that a significant proportion of women do not perform the test. These considerations point out the need for a screening test that would be better or complementary to mammogram and that would be based on an easier procedure.

So, there is a need to provide test for the patients to diagnose and give a diagnosis of the status of the breast tumor detected.

Many methods based on the knowledge of the molecular mechanism of the breast tumor evolution have been extensively described. These methods describe in particular large-scale process for the determination of variation of expression of genes, or proteins, which can define a hallmark of the breast tumor evolution.

WO 2007/048978 describes methods and compositions for the detection of molecular markers in order to diagnose cancer. In particular, this document describes methods and compositions that can be used to detect the presence or evolution of a breast tumor in a patient.

However, this document discloses in particular micro-arrays for the evaluation of miss-regulated expressed genes, without interest for the expression of variants of genes.

WO 2004/065545 discloses a diagnostic and prognostic method of the breast cancer tumor status, wherein said method consists to compare the expression profile of at least 5 genes of a determined list of 70 genes to the expression profile of said at least 5 genes of a determined list of 70 genes of a control tumor.

However, this document never teaches that the disclosed method can detect splicing variant of the mentioned at least 5 genes chosen among the list of 70 genes to determine the breast cancer status of a tumor.

The setting-up of new arrays to analyse the large-scale expression of exons allows a highly accurate identification of differential molecular events between two conditions. This approach not only analyzes genes differentially expressed (as it is the case with conventional DNA array) but also the differential splicing events. Applied to breast cancer, this large scale analysis could identify differential expression of gene sequences between cancer and benign lesions. Based on these data, it would be possible to set-up molecular assays that could allow a molecular diagnosis of breast cancer based on FNA samples, that would allow a quick, accurate and cost-saving diagnosis. In addition, this approach could allow to set-up a molecular test for breast cancer screening based on blood samples, ductal lavage or breast sampling by FNA.

One aim of the invention is to provide a molecular diagnosis to determine the status of a breast tumor.

Another aim of the invention provides micro-arrays to determine the benign or malignant status of a breast tumor.

Another aim of the invention provides a method using the micro-array to determine the benign or malignant status of a breast tumor.

The invention also provides a kit for the breast cancer diagnosis.

The invention discloses the use of a multiplicity of polynucleotide probe sets, said multiplicity of polynucleotide probe sets consisting in a combination of pools of polynucleotide probe sets, each polynucleotide probe set containing at least one polynucleotide probe chosen among a library of nucleic acid sequences, each nucleic acid sequence specifically hybridizing with a gene, and/or at least one of its variants when present, said gene being chosen among the group of genes consisting in SEQ ID NO 5419 to SEQ ID NO 5693,

-   -   each given gene, when it presents NO variant, comprising at         least one target region, the nucleic acid sequence of which is         chosen among SEQ ID NO 2939 TO SEQ ID NO 4578, said target         region characterizing said gene,     -   each given gene, when it presents at least one variant,         comprising at least two target regions such that:         -   at least one of the respective nucleic acid sequences of             said target region chosen among SEQ ID NO 2939 to SEQ ID NO             4578 is present in a given variant of said gene,         -   at least one of the respective nucleic acid sequences of             said target region chosen among SEQ ID NO 2939 to SEQ ID NO             4578 is either absent in a given variant or is present in a             configuration that differs from the one of said gene,         -   said two target regions characterizing said gene,     -   each variant of a given gene presenting at least one target         region, said target region being such that its respective         nucleic acid sequence is chosen among SEQ ID NO 2939 to SEQ ID         NO 4578,     -   each variant is characterized by:         -   either the combination of the presence of at least one             target region also present in the gene, the respective             nucleic acid sequence of which being chosen among SEQ ID NO             2939 to SEQ ID NO 4578, and the absence of at least one             target region present in the gene the respective nucleic             acid sequence of which being chosen among SEQ ID NO 2939 to             SEQ ID NO 4578,             -   or the presence of a target region, the respective                 nucleic acid sequence of which being chosen among SEQ ID                 NO 2939 to SEQ ID NO 4578, said target region presenting                 a configuration that does not naturally exist in the                 gene,     -   each polynucleotide probe of a polynucleotide probe set         hybridizes with a specific nucleic acid sequence contained in a         given target region of the target regions characterizing a given         gene, and/or at least one of its variants when present,     -   each given gene, and its variants when present, is specifically         recognized by the polynucleotide probes of at least a given         polynucleotide probe set,     -   each polynucleotide probe of a given pool of polynucleotide         probe set being such that it hybridizes with a given gene,         and/or at least one of its variants when present, and cannot         hybridize with any other gene different from said given gene,         and cannot hybridize with any other variants of a gene different         from said given gene,     -   the polynucleotide probes involved in the combination of pools         of polynucleotide probe sets of said multiplicity of         polynucleotide probe sets being such that each polynucleotide         probe specifically hybridizes with one gene, and/or at least one         of its variants when present, of a sub-group comprising 12 genes         among the genes of the group consisting in SEQ ID NO 5419 to SEQ         ID NO 5693,         for determining the variation of expression a gene, and its         variants when present, of said sub-group in order to diagnose         the benign or malignant state of a breast tumor.         The invention discloses the use of a multiplicity of         polynucleotide probe sets,     -   each polynucleotide probe set containing at least one         polynucleotide probe chosen among a library of nucleic acid         sequences, said library compring or consisting of at least one         copy each of the nucleic acids consisting of SEQ ID NO 1 to SEQ         ID NO 2938,     -   said polynucleotide probes being such that the nucleic acid         sequence of each polynucleotide probe specifically hybridizes         with the nucleotidic sequence of one target region of one gene,         and/or of at least one of its variants when present,         for determining the variation of the expression of     -   at least 12 determined genes belonging to a group of determined         genes represented by the nucleotidic sequences SEQ ID NO: 5419         to SEQ ID NO: 5693 and     -   at least one variant of said genes at least 12 determined genes,         when they exist,

said 12 determined genes being represented by the following nucleotidic sequences:

SEQ ID NOs 5421; 5423; 5432; 5434; 5486; 5491; 5525; 5552; 5599; 5652; 5654 and 5683,

in order to diagnose in vitro or ex vivo the benign or malignant state of a breast tumor,

wherein

-   -   a) each given gene,         -   a. when it presents no variant, comprises at least one             target region, said target region characterizing said gene,         -   b. when it presents one variant, comprises at least one             target region, said target region characterizing said gene             and its variant, and preferably said variant being             characterized by the fact that its nucleic acid sequence is             shorter than the nucleic acid sequence of said gene,         -   c. when it presents at least two variants, comprises at             least two target regions, said two target regions             characterizing said gene, such that:             -   i. at least one of the respective polynucleotidic                 sequences of said target region is present in a given                 variant of said gene, and             -   ii. at least one of the respective polynucleotidic                 sequences of said target region is either                 -   absent in a given variant, or                 -   present in a given variant in a configuration that                     differs from the one of said gene,                 -   preferably said variant being characterized such                     that its nucleic acid sequence is shorter than the                     nucleic acid of said gene,     -   b) each variant of a given gene presents at least one target         region, and         -   if said variant is the unique variant of a gene, said             variant has the same target as said gene, and         -   if said variant is one of the variants of a gene that has at             least two variants, each variant of said gene is             characterized by either:         -   a. the combination of the presence of at least one target             region also present in the gene, and the absence of at least             one target region present in the gene, or         -   b. the combination of the presence of at least one target             region also present in the gene, and the presence of a             target region, said target region presenting a configuration             that does not naturally exist in the gene,     -   c) the nucleotidic sequence of each given gene, and its variants         when present, is specifically recognized by the nucleic acid         sequences of polynucleotide probes contained in at least one         given polynucleotide probe set,     -   d) the nucleic acid sequence of each polynucleotide probe of a         polynucleotide probe set hybridizes with a specific         polynucleotidic sequence contained in a given target region of         the target regions which characterize a given gene, and/or at         least one of its variants when present,     -   e) the nucleic acid sequence of each polynucleotide probe of a         given pool of polynucleotide probe set being such that         -   a. it hybridizes with the nucleotidic sequence of a given             gene, and/or of at least one of its variants when present,             and         -   b. cannot hybridize with             -   i. the nucleotidic sequence of any other gene different                 from said given gene, and             -   ii. the nucleotidic sequence of any other variants of a                 gene different from said given gene,         -   with the proviso that said gene, and its variants when             present, is not KRT17, LOC440421, KRT6C and KRT6A, said             genes being respectively represented by SEQ ID NO 5431;             5689; 5651 and 5682.

In the case of KRT17, LOC440421, KRT6C and KRT6A genes, said genes being respectively represented by SEQ ID NO 5431; 5689; 5651 and 5682, the above mentioned definition of the nucleic acid sequence of each polynucleotide probe of a given pool of polynucleotide probe set applies with the exception that:

-   -   1—polynucleotide probes of a given pool of polynucleotide probe         set recognizing KRT17 can hybridize with LOC440421 and at least         one of its variant when present,     -   2—polynucleotide probes of a given pool of polynucleotide probe         set recognizing LOC440421 can hybridize with KRT17 and at least         one of its variant when present,     -   3—polynucleotide probes of a given pool of polynucleotide probe         set recognizing KRT6C can hybridize with KRT6A and at least one         of its variant when present, and     -   4—polynucleotide probes of a given pool of polynucleotide probe         set recognizing KRT6A can hybridize with KRT6C and at least one         of its variant when present.

The invention is based on the unexpected observation made by the inventors that the variation of expression of some genes, and their variants when they exist, may characterize the evolution of a diagnosed breast tumor. More particularly, the variants of the invention are the products of a differential splicing, or alternative splicing.

The inventors have demonstrated that the variation of expression of at least 12 determined genes of a group of 275 determined genes, and of variants of said at least 12 determined genes when they exist, hallmarks the benign or malignant status of a breast tumor.

Then, the invention describes the use of polynucleotide probes to characterize a benign versus malignant hallmark of a breast tumor, each polynucleotide probe hybridizing specifically with one gene, and at least one of its splicing variants when they exist, said gene splicing variant being able to be recognized by at least one polynucleotide probe.

In genetics, splicing is a modification of genetic information after transcription, in which introns of precursor messenger RNA (pre-mRNA) are removed and exons of precursor messenger RNA are joined. The splicing prepares the pre-mRNA to produce the mature messenger RNA (mRNA), which then undergoes translation as part of the protein synthesis to produce proteins.

Alternative splicing, in the sense of the invention, is the RNA splicing variation mechanism, in which the exons of the pre-mRNA are separated and reconnected so as to produce alternative ribonucleotide arrangements. In this way, alternative splicing uses genetic expression to facilitate the synthesis of a greater variety of transcripts.

When the pre-mRNA has been transcribed from the DNA, it includes several introns and exons. The exons which are retained in the mRNA are determined during the splicing process. The use of alternative splicing factors leads to a modification of the definition of a “gene” and imposes the variant notion.

For example a pre-mRNA containing 3 exons, if it is considered that variants must contain at least one exon of the gene and at least one exon missing of said gene, can hypothetically produce 6 different variants, as the result of alternative splicing.

In the invention, a gene is defined by the fact that it comprises the deoxyribonucleic acid sequence corresponding to the mRNA which results of the transcription of the DNA sequence, and after the splicing process. Then, the gene is characterized in that it comprises all the exons present in the genomic sequence of said gene.

All the 275 genes considered in the invention present a nucleic acid sequence chosen among the group consisting in SEQ ID NO 5419 to SEQ ID NO 5693.

In the invention, there are two alternatives for a gene:

-   -   said gene is not submitted to alternative splicing, and presents         no variants, or     -   said gene presents at least one variant.

In the case of a gene having no variant, this gene can is characterized in the invention by the presence of a target region. This target region corresponds to a nucleic acid sequence contained in the total nucleic acid sequence of the said gene.

In the case of a gene having one variant, this gene is defined by a target region, and its variant is defined by the same target region. The difference between the gene and its variant is preferably determined by the fact that the nucleic acid sequence of said gene is longer than the nucleic acid sequence of its variant.

This recognizing by one target region allows a redundancy of the representativity of said gene. Indeed, the target region contained in a gene having one variant is thus recognized at least twice, i.e. when the gene is present and when the variant of this gene is present. This redundancy enhances the specificity of detection of the gene expression variation.

In the case of a gene having at least two variants, this gene is defined by at least two regions, these two regions characterizing the gene. These regions are therefore present in gene. These regions, also called target regions correspond to nucleic acid sequences contained in the total nucleic acid sequence of said gene. Moreover, these target regions of said gene are located at a different position in the sequence of said gene.

The targets regions that are involved in the invention present a nucleic acid sequence chosen among the group consisting in SEQ ID NO 2939 to SEQ ID NO 4578.

According to the invention, a “variant” is defined as a polynucleotide molecule that differs from the reference polynucleotide molecule (the gene), but retains essential properties. The gene and its variants share similar polynucleotide sequences with, for example, 70% of nucleic acids identity, preferably 80% of nucleic acids identity, preferably 90% of nucleic acids identity and more preferably 95% of nucleic acids identity. The variants of the invention can be also considered as isoforms.

To be considered as a variant of a given gene, a polynucleotide sequence must contain at least one nucleotide sequence present in the said gene, this sequence corresponding to the target sequence defined above.

If a variant is the unique variant of a gene, this variant has the same target region as its gene, preferably with a nucleic acid sequence with a size that is shorter than the size of the nucleic acid sequence of said gene. Since said variant corresponds to a splicing product of a gene, it generally has one or more exons lacking that are present in said gene. Nevertheless, it is possible, in some rare examples, that a variant of a gene has a nucleic acid sequence with a size which is higher than the size of the nucleic acid sequence of said gene.

If a variant is a variant of a gene that has at least two variants, said variant has at least one difference in the presence of a nucleic acid sequence with respect to the given gene nucleic acid sequence. The specific combination of the presence of at least one target sequence and the absence of at least one target sequence defines the specific characteristic of a given variant. Therefore, each variant is defined by a “bar code” corresponding to the diversity of the presence and absence of all the target sequences present in a gene.

For example, if a gene contains 3 exons, all the nucleic acid sequences consisting in least one exon of said gene, and missing at least one of the other 2 exons of the said given gene, are considered as variants of said given gene.

FIG. 1A illustrates this example.

In the invention, a variant of a gene is characterized in that it comprises at least on target region. These target regions corresponds to polynucleotidic sequences chosen among the group consisting in SEQ ID NO 2939 to SEQ ID NO 4578.

So, a given variant of a gene can be characterized with respect to the target sequence by the fact it contains at least a target region, present in the gene corresponding to said variant, and must is devoid of at least one target region, present in the gene corresponding to said variant, only in the case of a gene that has at least two variants.

As defined above, a variant of a gene having at least two variants is then characterized by a bar code which corresponds to a combination of the presence of at least one target region of the gene, corresponding to the variant, and the absence of at least one target region of the gene corresponding to the variant.

A variant can also be alternatively defined. This other definition is supported by the feature of the invention: the alternative splicing.

When a gene, constituted by at least 3 exons, is differentially spliced, in the corresponding variants, some exons are fused to exons which are not naturally fused in the sequence of the gene. For example, in a gene constituted by 3 exons E1, E2 and E3, one variant can be constituted by the fusion of E1 and E3. In the gene, the natural configuration corresponds to the sequence E1-E2-E3. Then the configuration observed in the variant, E1-E3, is considered as a non natural configuration.

In this case, variant presents a sequence that does not exist in the natural configuration of the gene. It generally corresponds to a junction of to distant exons, separated by at least one other exon. If the target region characterizing the variant corresponds to the junction between two exons, naturally distant in the normal configuration in the gene, said target region characterizes specifically said variant. This example is illustrated by FIG. 1B.

Example of genes having, or not, at least one variant are represented in FIG. 3.

According to the invention, polynucleotide probes are used to detect the variation of expression of a gene, and/or its variants when they exist, to determine the status of a breast tumor.

Artificially, polynucleotide probes are grouped to form a polynucleotide probe set. The term “polynucleotide probe set” used in the invention defines a group of polynucleotide probes as described above. A given set of polynucleotide probe contains from one polynucleotide probe to several polynucleotide probes. Preferably, the polynucleotide probe set of the invention contains one polynucleotide probe to three or four polynucleotide probes. Thereby, polynucleotide probes regrouped in a polynucleotide probe set of the invention are able to hybridize to the same target region.

The polynucleotides probes are also brought together to form a “pool of polynucleotide probe sets”. The polynucleotides probes contained in the polynucleotide probe sets of a pool are able to specifically hybridize with nucleic acid sequences of a gene, and/or variants of said gene when they exist.

Alternatively, the polynucleotide probes contained in the polynucleotide probe sets of a pool are able to specifically hybridize neither with nucleic acid sequences of a different gene, nor with nucleic acid sequences of variants of said different gene, when they exist.

However, in few cases, the above definition should be modulated. In the case of genes KRT17 (SEQ ID NO 5431) and LOC440421 (SEQ ID NO 5689), these genes are two different genes, but share a high similarity/identity in their nucleic acid sequence. Thus, these two genes present some gene regions in their nucleic acid sequence which can be identical. If a target region is present in said gene region, therefore, the polynucleotide probe that recognize the target region contained in said gene region will be able to recognize the two genes.

A similar example applies with genes KRT6A (SEQ ID NO 5682) and KRT6C (SEQ ID NO 5651).

Then, polynucleotide probes of a pool of polynucleotide probe sets are able to characterize a gene and its variants. Moreover, a given gene, and its variants when they exist, can be detected only by the polynucleotide probes of the same pool of polynucleotide probe sets.

According to the invention, each gene, and its variants when present, can be detected by all the polynucleotide probes of a probe set. Moreover, each gene can be recognized by all the polynucleotide probes of at least one polynucleotide probe set, i.e. each gene and its variants can be defined by at least one polynucleotide probe set.

A variant can be detected by two polynucleotide probes belonging to two different polynucleotide probe sets, provided that they belong to the same pool of polynucleotide probe set.

The multiplicity, pool, polynucleotide probe set, and polynucleotide probe interconnection are represented in FIG. 2.

Terms “library compring or consisting of at least one copy each of the nucleic acids consisting of SEQ ID NO 1 to SEQ ID NO 2938” means that the library can contain one, or two, or three, or four, or five or six or seven or eight, or nine or ten copies of each polynucleotide probes represented by the nucleic acids consisting of SEQ ID NO 1 to SEQ ID NO 2938. Thus, the minimal library contains 2938 polynucleotides probes, and the maximal library contains 29380 polynucleotides probes. Preferably the preferred library of the invention contains 4582 polynucleotides probes.

In the invention, a “benign breast tumor” is any non-cancerous breast abnormality. Some (not all) benign conditions can signal an increased risk for breast cancer. The most common benign breast conditions include fibrocystic breast condition, benign breast tumors, and breast inflammation. Depending on the type of benign breast condition and the patient's medical situation, treatment may or may not be necessary.

In the invention, a “malignant breast tumor refers” to a malignant tumor that has developed from cells in the breast. Malignant tumors penetrate and destroy healthy body tissues. A group of cells within a tumor may also break away and spread to other parts of the body. Cells that spread from one region of the body into another are called metastases.

The term “base” is used to define the components of the DNA or RNA, i.e. deoxyribonucleotides and ribonucleotides respectively.

Terms “nucleic acids”, “nucleic acid molecule”, “nucleic acid sequence”, “polynucleotidic sequence”, and “polynucleotide” are uniformly used to define a chain of bases that characterizing a DNA or an RNA molecule.

In the invention, “polynucleotide probe” represent a fragment of nucleic acid molecule, corresponding to DNA or RNA, with a variable length. The length of the polynucleotide probe is commonly comprised between 15 bases to 1000 bases, and preferably between 20 bases to 500 bases. Advantageously, the polynucleotide probes defined in the invention comprise from 20 bases to 30 bases. These polynucleotide probes are defined by their nucleic acid sequence.

In the invention, terms “multiplicity” and “combination” are used to define a group of polynucleotide probes sets and polynucleotide probes, respectively. Theses groups correspond to an ensemble of probes, or sets of probes, characterized in that they contains similar information.

According to the invention, each nucleic acid sequence corresponding to nucleic acid probe “specifically hybridizes with” a target region of the said gene. These terms mean that each polynucleotide probe is able to hybridize with a gene, and/or its variants when they exist, defined above. The polynucleotide probe thereby hybridizes to single-stranded nucleic acid molecule (gene and/or its variants, which are DNA or RNA) whose nucleic acid sequence allows base pairing due to complementarity between the nucleic acid sequence of the probe and the nucleic acid sequence of the gene and/or variants of said gene. The base pairing (A-T;G-C) is a concept well known by the skilled man in the art.

Each polynucleotide probe is able to hybridize with one gene and/or at least one variant of said gene, in a specific region of said variant called target region.

Said target region is then defined as the region allowing the base pairing between polynucleotide probe and a gene and/or its variants, when they exist.

Thereby, each polynucleotide probe is able to define a gene and/or at least one variant of said gene, when they exist.

According to the invention, each polynucleotide probe specifically hybridizes with a specific nucleic acid sequence contained in the target region. Moreover, each polynucleotide probes can recognizes a sequence overlapping partially with the sequence recognized by another probe of the same polynucleotide probe set.

To sum up, in the invention each gene, or reference transcript, can be expressed differentially in the form of variants. These variants differ from each other by the presence or absence or the variation of a sequence of a specific region: the target region. This region is liable to be recognized by one to three polynucleotide probes, said polynucleotide probes hybridizing with the same target region being brought together in a polynucleotide probe set.

Then, the use of the multiplicity of polynucleotide probe sets of the invention allows to detect the variation of expression of at least 12 determined genes consisting in SEQ ID NO 5421, SEQ ID NO 5423, SEQ ID NO 5432, SEQ ID NO 5434, SEQ ID NO 5486, SEQ ID NO 5491, SEQ ID NO 5525, SEQ ID NO 5552, SEQ ID NO 5599, SEQ ID NO 5652, SEQ ID NO 5654 and SEQ ID NO 5683, and their variants when they exist, of the group of determined genes constituted by genes of the group constituted by SEQ ID NO 5419 to SEQ ID NO 5693, and a skill man in the art can determine if the breast tumor is malignant or benign.

Thereby, if the expression of a given gene and/or at least one of its variants belonging to the group of 12 determined genes corresponds to a “profile” similar to that of a benign tumor, the tumor of the patient will be considered as evolving to a benign status. In contrast, the expression of a gene and/or at least one of its variant belonging to the group of 12 genes corresponds to that of a “profile” similar to a malignant tumor, it will be considered that the tumor is a malignant tumor.

In one embodiment, the invention discloses the use of a multiplicity of polynucleotide probe sets, wherein the multiplicity of polynucleotide probe sets consisting in a combination of pools of polynucleotide probe sets chosen among 1640 probe sets of polynucleotides, each polynucleotide probe set containing at least one polynucleotide probe chosen among a library of nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO 2938, each nucleic acid sequence hybridizing with a gene, and/or at least one of its variants when present, said gene being chosen among the group of genes consisting in SEQ ID NO 5419 to SEQ ID NO 5693,

-   -   each given gene, when it presents NO variant, comprising at         least one target region, the nucleic acid sequence of which is         chosen among SEQ ID NO 2939 TO SEQ ID NO 4578, said target         region characterizing said gene,     -   each given gene, when it presents at least one variant,         comprising at least two target regions such that:         -   at least one of the respective nucleic acid sequences of             said target region chosen among SEQ ID NO 2939 to SEQ ID NO             4578 is present in a given variant of said gene,         -   at least one of the respective nucleic acid sequences of             said target region chosen among SEQ ID NO 2939 to SEQ ID NO             4578 is either absent in a given variant or is present in a             configuration that differs from the one of said gene,         -   said two target regions characterizing said gene,         -   each variant of a given gene presenting at least one target             region, said target region being such that its respective             nucleic acid sequence is chosen among SEQ ID NO 2939 to SEQ             ID NO 4578,         -   each variant is characterized by:             -   either the combination of the presence of at least one                 target region also present in the gene, the respective                 nucleic acid sequence of which being chosen among SEQ ID                 NO 2939 to SEQ ID NO 4578, and the absence of at least                 one target region present in the gene the respective                 nucleic acid sequence of which being chosen among SEQ ID                 NO 2939 to SEQ ID NO 4578,             -   or the presence of a target region, the respective                 nucleic acid sequence of which being chosen among SEQ ID                 NO 2939 to SEQ ID NO 4578, said target region presenting                 a configuration that does not naturally exist in the                 gene,     -   each polynucleotide probe of a polynucleotide probe set         hybridizes with a specific nucleic acid sequence contained in a         given target region of the target regions which characterize a         given gene, and/or at least one of its variants when present,     -   each given gene, and its variants when present, is specifically         recognized by at least a given polynucleotide probe set,     -   each polynucleotide probe of a given pool of polynucleotide         probe set being such that it hybridizes with a given gene,         and/or at least one of its variants when present, and cannot         hybridize with any other gene different from said given gene,         and cannot hybridize with any other variants of a gene different         from said given gene,     -   the polynucleotide probes involved in the combination of pools         of polynucleotide probe sets of said multiplicity of         polynucleotide probe sets being such that each polynucleotide         probe specifically hybridizes with one gene, and/or at least one         of its variants when present, of a sub-group comprising 12 genes         among the genes of the group consisting in SEQ ID NO 5419 to SEQ         ID NO 5693,

for determining the variation of expression a gene, and its variants when present, of said sub-group in order to diagnose the benign or malignant state of a breast tumor.

In one preferred embodiment, the invention discloses the use of a multiplicity of polynucleotide probe sets defined above, for determining the variation of the expression of at least 20 determined genes of a group of genes represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ ID NO: 5693,

-   -   said 20 determined genes being represented by the following         nucleotidic sequences:     -   SEQ ID Nos 5421; 5423; 5432; 5434; 5457; 5486; 5491; 5513; 5516;         5525; 5532; 5552; 5599; 5616; 5624; 5643; 5652; 5654; 5673 and         5683.

The invention resides in the unexpected observation that the variation of expression of a group of at least 20 determined genes chosen among 275 determined genes is sufficient to determine the malignant or the benign status of a breast tumor.

In another preferred embodiment the invention discloses the use of a multiplicity of polynucleotide probe sets as above defined, for determining the variation of the expression of at least 35 determined genes of a group of determined genes represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ ID NO: 5693

-   -   said 35 determined genes being represented by the following         nucleotidic sequences:

SEQ ID Nos 5421; 5423; 5431; 5432; 5434; 5440; 5457; 5462; 5470; 5486; 5491; 5505; 5513; 5516; 5525; 5532; 5546; 5552; 5594; 5599; 5601; 5603; 5616; 5618; 5624; 5627; 5630; 5643; 5645; 5652; 5654; 5660; 5669; 5673 and 5683.

The invention also resides in the unexpected observation that the variation of expression of a group of at least 35 determined genes chosen among 275 determined genes is sufficient to determine the malignant or the benign status of a breast tumor.

In another preferred embodiment the invention discloses the use of a multiplicity of polynucleotide probe sets previously defined, for determining the variation of the expression of at least 43 determined genes of a group of determined genes represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ ID NO: 5693,

-   -   said 43 determined genes being represented by the following         nucleotidic sequences:     -   SEQ ID Nos 5421; 5423; 5431; 5432; 5434; 5440; 5455; 5457; 5462;         5470; 5475; 5486; 5491; 5499; 5505; 5513; 5516; 5520; 5525;         5532; 5546; 5549; 5552; 5594; 5599; 5601; 5603; 5616; 5618;         5623; 5624; 5627; 5630; 5643; 5645; 5651; 5652; 5654; 5660;         5669; 5673; 5683 and 5686.

The invention also resides in the unexpected observation that the variation of expression of a group of at least 43 determined genes chosen among 275 determined genes is sufficient to determine the malignant or the benign status of a breast tumor.

In another preferred embodiment the invention discloses the use of a multiplicity of polynucleotide probe sets such as defined above, for determining the variation of the expression of at least 206 determined genes of a group of determined genes represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ ID NO: 5693

-   -   said 206 determined genes being represented by the following         nucleotidic sequences:         SEQ ID Nos 5420; 5421; 5422; 5423; 5425; 5426; 5427; 5428; 5429;         5430; 5431; 5432; 5434; 5435; 5436; 5437; 5438; 5439; 5440;         5441; 5442; 5443; 5444; 5445; 5446; 5447; 5449; 5450; 5451;         5452; 5453; 5454; 5455; 5456; 5457; 5459; 5460; 5461; 5462;         5463; 5465; 5467; 5468; 5470; 5473; 5475; 5476; 5479; 5480;         5482; 5484; 5485; 5486; 5487; 5488; 5489; 5490; 5491; 5492;         5493; 5495; 5496; 5497; 5498; 5499; 5502; 5503; 5505; 5506;         5507; 5508; 5509; 5511; 5512; 5513; 5515; 5516; 5517; 5518;         5519; 5520; 5523; 5524; 5525; 5526; 5528; 5529; 5530; 5531;         5532; 5533; 5534; 5536; 5538; 5539; 5540; 5543; 5544; 5545;         5546; 5547; 5549; 5550; 5552; 5553; 5554; 5556; 5558; 5559;         5560; 5562; 5563; 5564; 5565; 5566; 5567; 5568; 5569; 5570;         5571; 5573; 5574; 5575; 5576; 5577; 5578; 5581; 5582; 5585;         5587; 5588; 5590; 5591; 5593; 5594; 5595; 5597; 5598; 5599;         5600; 5601; 5602; 5603; 5604; 5605; 5606; 5608; 5609; 5610;         5611; 5612; 5613; 5615; 5616; 5617; 5618; 5622; 5623; 5624;         5625; 5627; 5629; 5630; 5631; 5632; 5633; 5634; 5635; 5637;         5638; 5639; 5640; 5641; 5642; 5643; 5644; 5645; 5647; 5648;         5649; 5651; 5652; 5653; 5654; 5656; 5657; 5658; 5660; 5661;         5665; 5667; 5669; 5672; 5673; 5675; 5676; 5677; 5678; 5680;         5681; 5683; 5684; 5686; 5687; 5689 and 5692.

The invention also resides in the unexpected observation that the variation of expression of a group of at least 206 determined genes chosen among 275 determined genes is sufficient to determine the malignant or the benign status of a breast tumor, and provide the best results.

In another preferred embodiment the invention discloses the use of a multiplicity of polynucleotide probe sets such as above defined, for determining the variation of the expression of 275 determined genes represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ ID NO: 5693.

The invention also resides in the unexpected observation that the variation of expression of 275 determined genes is sufficient to determine the malignant or the benign status of a breast tumor.

Then, in an advantageous embodiment, the invention describes the use of a multiplicity of polynucleotide probe sets that allow the detection of variation of expression 12 genes, and their variants when they exist, said variation defining the benign or malignant hallmark of the breast tumor.

More particularly, the 12 genes, and their variants when they exist, are represented by their nucleic acid sequences consisting in SEQ ID NO 5421, SEQ ID NO 5423, SEQ ID NO 5432, SEQ ID NO 5434, SEQ ID NO 5486, SEQ ID NO 5491, SEQ ID NO 5525, SEQ ID NO 5552, SEQ ID NO 5599, SEQ ID NO 5652, SEQ ID NO 5654 and SEQ ID NO 5683 and are specifically recognized by their target sequences.

In one preferred embodiment, the invention relates to the use of a multiplicity of polynucleotide probe sets for determining the variation the gene expression as defined above, and of at least one variant of said genes when present, said variant being represented by the nucleic acid sequences SEQ ID NO 4579 to SEQ ID NO 5418 and SEQ ID NO 5694, the correspondence between each variant and its corresponding gene being represented in Table 1A-E and in Table 6.

Thus, according to the invention the inventors have demonstrated that the determination of the variation of expression of at least 12 genes chosen among a group of 275 genes, and of at least one variant of each at least 12 genes give a good information about the benign or malignant status of a breast tumor, without important false positives.

Also, others aspects of the invention demonstrate that the study of the variation of expression of:

-   -   at least 20 determined genes, or     -   at least 35 determined genes, or     -   at least 43 determined genes or     -   at least 206 determined genes     -   of a group of 275 determined genes, and         the expression of at least one variant of said at least 20         determined genes, or     -   of said at least 35 determined genes, or     -   of said at least 43 determined genes, or     -   of said at least 206 determined genes         allows to the pathologist to clearly and without ambiguity         determine if a breast tumor is, or will be, benign or malignant.

In one particular embodiment, the variation of expression of all the 275 determined genes and at least one of their variant allows the diagnostic.

In another particular embodiment, the invention relates to the use as defined above, for the determination of the variation of expression of at least 12 determined genes of the group of 275 determined genes represented by SEQ ID NO 5419 to SEQ ID NO 5693, and of at least one of the variants of said at least 12 determined genes, wherein the correspondence between genes and their variants is indicated in the following table 1A.

Table 1A represents the correspondences between the group of 12 determined genes and their corresponding variants.

Gene Name Gene SEQ ID Variants SEQ ID AK5 SEQ ID NO 5654 SEQ ID NO 4620 COL17A1 SEQ ID NO 5683 SEQ ID NO 4739; SEQ ID NO 4784; SEQ ID NO 5242; SEQ ID NO 5384 DMD SEQ ID NO 5421 SEQ ID NO 4664; SEQ ID NO 4860; SEQ ID NO 5058; SEQ ID NO 5095; SEQ ID NO 5150; SEQ ID NO 5381; SEQ ID NO 5410; KIT SEQ ID NO 5423 SEQ ID NO 5107 KRT14 SEQ ID NO 5434 SEQ ID NO 4819; SEQ ID NO 4825; SEQ ID NO 4845; SEQ ID NO 4877; SEQ ID NO 4891; SEQ ID NO 4969 KRT16 SEQ ID NO 5525 SEQ ID NO 4826; SEQ ID NO 4881 KRT5 SEQ ID NO 5432 SEQ ID NO 5279 MYH11 SEQ ID NO 5599 SEQ ID NO 4697; SEQ ID NO 4870; SEQ ID NO 5361; SEQ ID NO 5365 NRG1 SEQ ID NO 5552 SEQ ID NO 5084 PTN SEQ ID NO 5486 SEQ ID NO 4666 SFRP1 SEQ ID NO 5491 SEQ ID NO 5161 TSHZ2 SEQ ID NO 5652 SEQ ID NO 4962

In another particular embodiment, the invention relates to the use as defined above, for the determination of the variation of expression of at least 20 determined genes of the group of 275 genes represented by SEQ ID NO 5419 to SEQ ID NO 5693, and of at least one of the variants of said at least 20 determined genes, wherein the correspondence between genes and their variants is indicated in the following table 1B.

Table 1B represents the correspondences between the group of 20 determined genes and their corresponding variants.

Gene Name Gene SEQ ID Variants SEQ ID AK5 SEQ ID NO 5654 SEQ ID NO 5224 C2orf40 SEQ ID NO 5616 SEQ ID NO 4832 C9orf61 SEQ ID NO 5516 SEQ ID NO 4661 CNN1 SEQ ID NO 5457 SEQ ID NO 5181; SEQ ID NO 4666 COL17A1 SEQ ID NO 5683 SEQ ID NO 4739; SEQ ID NO 4784; SEQ ID NO 5242; SEQ ID NO 5384 DMD SEQ ID NO 5421 SEQ ID NO 4664; SEQ ID NO 4860; SEQ ID NO 4908; SEQ ID NO 5058; SEQ ID NO 5095; SEQ ID NO 5150; SEQ ID NO 5381; SEQ ID NO 5410; SEQ ID NO 5107 DMN SEQ ID NO 5643 SEQ ID NO 4610; SEQ ID NO 5120 EDN3 SEQ ID NO 5673 SEQ ID NO 5405 IL33 SEQ ID NO 5624 SEQ ID NO 4927 KIT SEQ ID NO 5423 SEQ ID NO 5177; SEQ ID NO 4748; SEQ ID NO 4817; SEQ ID NO 4821; SEQ ID NO 5152 KRT14 SEQ ID NO 5434 SEQ ID NO 4969 KRT16 SEQ ID NO 5525 SEQ ID NO 4826; SEQ ID NO 4881 KRT5 SEQ ID NO 5432 SEQ ID NO 5279; SEQ ID NO 4740; SEQ ID NO 4819; SEQ ID NO 4825; SEQ ID NO 4845; SEQ ID NO 4877; SEQ ID NO 4878; SEQ ID NO 4891 MYH11 SEQ ID NO 5599 SEQ ID NO 4697; SEQ ID NO 4870; SEQ ID NO 4972; SEQ ID NO 5103; SEQ ID NO 5323; SEQ ID NO 5361; SEQ ID NO 5365 NRG1 SEQ ID NO 5552 SEQ ID NO 5084; SEQ ID NO 5413 NTRK2 SEQ ID NO 5532 SEQ ID NO 5121 PIK3C2G SEQ ID NO 5513 SEQ ID NO 5109 PTN SEQ ID NO 5486 SEQ ID NO 5317; SEQ ID NO 4909 SFRP1 SEQ ID NO 5491 SEQ ID NO 5161 TSHZ2 SEQ ID NO 5652 SEQ ID NO 4962; SEQ ID NO 4620; SEQ ID NO 4694; SEQ ID NO 4786; SEQ ID NO 4794

In another preferred embodiment, the invention relates to the use as defined above, for the determination of the variation of expression of at least 35 determined genes of the group of 275 determined genes represented by SEQ ID NO 5419 to SEQ ID NO 5693, and of at least one of the variants of said at least 35 determined genes, wherein the correspondence between genes and their variants is indicated in the following table 1C.

Table 1C represents the correspondences between the group of 35 determined genes and their corresponding variants.

Gene Name Gene SEQ ID Variants SEQ ID ACTA2 SEQ ID NO 5462 — AK5 SEQ ID NO 5654 SEQ ID NO 4586; SEQ ID NO 4620; SEQ ID NO 4658; SEQ ID NO 4694; SEQ ID NO 4786; SEQ ID NO 4794; SEQ ID NO 4856; SEQ ID NO 5078; SEQ ID NO 5224; SEQ ID NO 5391 C2orf40 SEQ ID NO 5616 SEQ ID NO 4832 C9orf61 SEQ ID NO 5516 SEQ ID NO 4661 CNN1 SEQ ID NO 5457 SEQ ID NO 5181 CNTNAP3 SEQ ID NO 5627 SEQ ID NO 4675 COL14A1 SEQ ID NO 5594 SEQ ID NO 5102 COL17A1 SEQ ID NO 5683 SEQ ID NO 4739; SEQ ID NO 4784; SEQ ID NO 5242; SEQ ID NO 5384 CRYAB SEQ ID NO 5470 SEQ ID NO 4858 DMD SEQ ID NO 5421 SEQ ID NO 4664; SEQ ID NO 4860; SEQ ID NO 4908; SEQ ID NO 5058; SEQ ID NO 5095; SEQ ID NO 5150; SEQ ID NO 5381; SEQ ID NO 5387; SEQ ID NO 5410 DMN SEQ ID NO 5643 SEQ ID NO 4610; SEQ ID NO 5120 DST SEQ ID NO 5660 SEQ ID NO 5309 EDN3 SEQ ID NO 5673 SEQ ID NO 5405 FAM126A SEQ ID NO 5618 SEQ ID NO 5157 FBXL7 SEQ ID NO 5546 SEQ ID NO 4932 GRAMD3 SEQ ID NO 5601 SEQ ID NO 4857 IL33 SEQ ID NO 5624 SEQ ID NO 4927 IRX1 SEQ ID NO 5603 SEQ ID NO 5140 KIT SEQ ID NO 5423 SEQ ID NO 5107; SEQ ID NO 5177 KRT14 SEQ ID NO 5434 SEQ ID NO 4740; SEQ ID NO 4819; SEQ ID NO 4825; SEQ ID NO 4845; SEQ ID NO 4877; SEQ ID NO 4878; SEQ ID NO 4891; SEQ ID NO 4969 KRT16 SEQ ID NO 5525 SEQ ID NO 4826; SEQ ID NO 4881 KRT17 SEQ ID NO 5431 SEQ ID NO 4876; SEQ ID NO 4992 KRT5 SEQ ID NO 5432 SEQ ID NO 4748; SEQ ID NO 4817; SEQ ID NO 4821; SEQ ID NO 4919; SEQ ID NO 5152; SEQ ID NO 5279 MME SEQ ID NO 5440 SEQ ID NO 4579; SEQ ID NO 5054 MYH11 SEQ ID NO 5599 SEQ ID NO 4697; SEQ ID NO 4870; SEQ ID NO 4972; SEQ ID NO 5053; SEQ ID NO 5103; SEQ ID NO 5323; SEQ ID NO 5361; SEQ ID NO 5365 MYLK SEQ ID NO 5630 SEQ ID NO 5376 NDRG2 SEQ ID NO 5669 SEQ ID NO 4868; SEQ ID NO 4911 NRG1 SEQ ID NO 5552 SEQ ID NO 5084; SEQ ID NO 5148; SEQ ID NO 5413 NTRK2 SEQ ID NO 5532 SEQ ID NO 5121 PIK3C2G SEQ ID NO 5513 SEQ ID NO 5109 PTN SEQ ID NO 5486 SEQ ID NO 4666; SEQ ID NO 5317 SFRP1 SEQ ID NO 5491 SEQ ID NO 4909; SEQ ID NO 5161 TANK SEQ ID NO 5505 SEQ ID NO 5069 TSHZ2 SEQ ID NO 5652 SEQ ID NO 4962 WIF1 SEQ ID NO 5645 SEQ ID NO 5397

In other preferred embodiment, the invention relates to the use as defined above, for the determination of the variation of expression of at least 43 determined genes of the group of 275 determined genes represented by SEQ ID NO 5419 to SEQ ID NO 5693, and of at least one of the variants of said at least 43 determined genes, wherein the correspondence between genes and their variant s is indicated in the following table 1D.

Table 1D represents the correspondences between the group of 43 determined genes and their corresponding variants.

Gene Name Gene SEQ ID Variants SEQ ID ACTA2 SEQ ID NO 5462 SEQ ID NO 4633; SEQ ID NO 4795; SEQ ID NO 4956; SEQ ID NO 5052; SEQ ID NO 5093; SEQ ID NO AK5 SEQ ID NO 5654 SEQ ID NO 4586; SEQ ID NO 4620; SEQ ID NO 4658; SEQ ID NO 4694; SEQ ID NO 4786; SEQ ID NO 4794; SEQ ID NO 4856; SEQ ID NO 5078; SEQ ID NO 5224; SEQ ID NO 5391 C2orf40 SEQ ID NO 5616 SEQ ID NO 4832; SEQ ID NO 4862 C9orf61 SEQ ID NO 5516 SEQ ID NO 4661 CNN1 SEQ ID NO 5457 SEQ ID NO 5181; SEQ ID NO 5185 CNTNAP3 SEQ ID NO 5627 SEQ ID NO 4597; SEQ ID NO 4675 COL14A1 SEQ ID NO 5594 SEQ ID NO 5102 COL17A1 SEQ ID NO 5683 SEQ ID NO 4739; SEQ ID NO 4784; SEQ ID NO 5242; SEQ ID NO 5384 CRYAB SEQ ID NO 5470 SEQ ID NO 4858 DKK3 SEQ ID NO 5549 SEQ ID NO 4933; SEQ ID NO 5208 DMD SEQ ID NO 5421 SEQ ID NO 4664; SEQ ID NO 4860; SEQ ID NO 4908; SEQ ID NO 5058; SEQ ID NO 5095; SEQ ID NO 5150; SEQ ID NO 5381; SEQ ID NO 5387; SEQ ID NO 5410 DMN SEQ ID NO 5643 SEQ ID NO 4610; SEQ ID NO 5120; SEQ ID NO 5396 DST SEQ ID NO 5660 SEQ ID NO 5309 EDN3 SEQ ID NO 5673 SEQ ID NO 5405 FAM126A SEQ ID NO 5618 SEQ ID NO 5126; SEQ ID NO 5157 FBXL7 SEQ ID NO 5546 SEQ ID NO 4932 GRAMD3 SEQ ID NO 5601 SEQ ID NO 4857 IL33 SEQ ID NO 5624 SEQ ID NO 4927 IRX1 SEQ ID NO 5603 SEQ ID NO 5140 KIT SEQ ID NO 5423 SEQ ID NO 5107; SEQ ID NO 5177 KRT14 SEQ ID NO 5434 SEQ ID NO 4740; SEQ ID NO 4819; SEQ ID NO 4825; SEQ ID NO 4845; SEQ ID NO 4877; SEQ ID NO 4878; SEQ ID NO 4891; SEQ ID NO 4969 KRT15 SEQ ID NO 5475 SEQ ID NO 4619; SEQ ID NO 4867; SEQ ID NO 4967 KRT16 SEQ ID NO 5525 SEQ ID NO 4826; SEQ ID NO 4881 KRT17 SEQ ID NO 5431 SEQ ID NO 4876; SEQ ID NO 4992; SEQ ID NO 5036 KRT5 SEQ ID NO 5432 SEQ ID NO 4748; SEQ ID NO 4782; SEQ ID NO 4817; SEQ ID NO 4821; SEQ ID NO 4827; SEQ ID NO 4919; SEQ ID NO 4970; SEQ ID NO 5152; SEQ ID NO 5279; SEQ ID NO 5406 KRT6C SEQ ID NO 5651 SEQ ID NO 4840 MGC70870 SEQ ID NO 5686 SEQ ID NO 5201 MID1 SEQ ID NO 5623 SEQ ID NO 4706 MME SEQ ID NO 5440 SEQ ID NO 4579; SEQ ID NO 4607; SEQ ID NO 5054 MYH11 SEQ ID NO 5599 SEQ ID NO 4697; SEQ ID NO 4870; SEQ ID NO 4972; SEQ ID NO 5053; SEQ ID NO 5103; SEQ ID NO 5323; SEQ ID NO 5361; SEQ ID NO 5365 MYLK SEQ ID NO 5630 SEQ ID NO 5376 NDRG2 SEQ ID NO 5669 SEQ ID NO 4868; SEQ ID NO 4898; SEQ ID NO 4911; SEQ ID NO 5010 NRG1 SEQ ID NO 5552 SEQ ID NO 5084; SEQ ID NO 5085; SEQ ID NO 5148; SEQ ID NO 5395; SEQ ID NO 5412; SEQ ID NO 5413 NTRK2 SEQ ID NO 5532 SEQ ID NO 5121 PDE1C SEQ ID NO 5520 SEQ ID NO 4657 PIK3C2G SEQ ID NO 5513 SEQ ID NO 5109 PTN SEQ ID NO 5486 SEQ ID NO 4666; SEQ ID NO 5317 SFRP1 SEQ ID NO 5491 SEQ ID NO 4909; SEQ ID NO 5161 TANK SEQ ID NO 5505 SEQ ID NO 5069 TOP2A SEQ ID NO 5455 SEQ ID NO 5153 TP63 SEQ ID NO 5499 SEQ ID NO 4588 TSHZ2 SEQ ID NO 5652 SEQ ID NO 4962 WIF1 SEQ ID NO 5645 SEQ ID NO 5397

In another preferred embodiment, the invention relates to the use as defined above, for the determination of the variation of expression of at least 206 determined genes of the group of 275 determined genes represented by SEQ ID NO 5419 to SEQ ID NO 5693, and of at least one of the variants of said at least 206 determined genes, wherein the correspondence between genes and their variants is indicated in the following table 1E.

Table 1E represents the correspondences between the group of 206 determined genes and their corresponding variants.

Gene Name Gene SEQ ID Variants SEQ ID A2M SEQ ID NO 5420 SEQ ID NO 4855; SEQ ID NO 4945; SEQ ID NO 5092; SEQ ID NO 5248; SEQ ID NO 5328; SEQ ID NO 5363; SEQ ID NO 5364 ACTA2 SEQ ID NO 5462 SEQ ID NO 4632; SEQ ID NO 4633; SEQ ID NO 4795; SEQ ID NO 4956; SEQ ID NO 4959; SEQ ID NO 4981; SEQ ID NO 5052; SEQ ID NO 5057; SEQ ID NO 5093; SEQ ID NO 5316; SEQ ID NO 5350; SEQ ID NO 5369 ACTG2 SEQ ID NO 5463 SEQ ID NO 4774; SEQ ID NO 4777; SEQ ID NO 4940 ADD3 SEQ ID NO 5588 SEQ ID NO 4629 AK5 SEQ ID NO 5654 SEQ ID NO 4586; SEQ ID NO 4620; SEQ ID NO 4658; SEQ ID NO 4694; SEQ ID NO 4786; SEQ ID NO 4794; SEQ ID NO 4856; SEQ ID NO 5071; SEQ ID NO 5078; SEQ ID NO 5224; SEQ ID NO 5391 ALDH7A1 SEQ ID NO 5456 SEQ ID NO 4836 ALKBH3 SEQ ID NO 5641 SEQ ID NO 4756 ANLN SEQ ID NO 5587 SEQ ID NO 4734; SEQ ID NO 4792; SEQ ID NO 5210 ANXA1 SEQ ID NO 5436 SEQ ID NO 4651; SEQ ID NO 4760; SEQ ID NO 4888; SEQ ID NO 5066; SEQ ID NO 5343 ANXA8L2 SEQ ID NO 5465 SEQ ID NO 4901; SEQ ID NO 5018; SEQ ID NO 5246 APCDD1 SEQ ID NO 5647 SEQ ID NO 4871; SEQ ID NO 5001; SEQ ID NO 5081; SEQ ID NO 5182 AQP1 SEQ ID NO 5661 SEQ ID NO 4676; SEQ ID NO 4865 ARHGAP26 SEQ ID NO 5560 SEQ ID NO 5215 ARL4A SEQ ID NO 5453 SEQ ID NO 4793; SEQ ID NO 5002; SEQ ID NO 5004 ARRDC3 SEQ ID NO 5591 SEQ ID NO 4642; SEQ ID NO 4973 ASPM SEQ ID NO 5581 SEQ ID NO 5050 ASPN SEQ ID NO 5573 SEQ ID NO 4854 ATP8B4 SEQ ID NO 5608 SEQ ID NO 4814 B4GALNT4 SEQ ID NO 5656 SEQ ID NO 5007 BCL11A SEQ ID NO 5577 SEQ ID NO 5204 BUB1 SEQ ID NO 5509 SEQ ID NO 5082 C1orf112 SEQ ID NO 5582 SEQ ID NO 5268 C2orf40 SEQ ID NO 5616 SEQ ID NO 4832; SEQ ID NO 4862 C3orf64 SEQ ID NO 5653 SEQ ID NO 4626 C9orf61 SEQ ID NO 5516 SEQ ID NO 4661; SEQ ID NO 4788; SEQ ID NO 5034; SEQ ID NO 5290 CCNB1 SEQ ID NO 5615 SEQ ID NO 5138 CCNE2 SEQ ID NO 5631 SEQ ID NO 4656 CDKN3 SEQ ID NO 5523 SEQ ID NO 4837 CENPA SEQ ID NO 5467 SEQ ID NO 4637 CENPE SEQ ID NO 5468 SEQ ID NO 5097 CENPF SEQ ID NO 5568 SEQ ID NO 4843; SEQ ID NO 5130 CFI SEQ ID NO 5422 SEQ ID NO 4719; SEQ ID NO 5105 CHST9 SEQ ID NO 5613 SEQ ID NO 4582 CLDN8 SEQ ID NO 5667 SEQ ID NO 4720; SEQ ID NO 4953 CLIP4 SEQ ID NO 5606 SEQ ID NO 5314 CNN1 SEQ ID NO 5457 SEQ ID NO 5079; SEQ ID NO 5181; SEQ ID NO 5185 CNTNAP3 SEQ ID NO 5627 SEQ ID NO 4597; SEQ ID NO 4675 CNTNAP3B SEQ ID NO 5692 SEQ ID NO 5399 COL14A1 SEQ ID NO 5594 SEQ ID NO 4727; SEQ ID NO 4936; SEQ ID NO 5102; SEQ ID NO 5326; SEQ ID NO 5382; SEQ ID NO 5418 COL17A1 SEQ ID NO 5683 SEQ ID NO 4739; SEQ ID NO 4747; SEQ ID NO 4784; SEQ ID NO 4897; SEQ ID NO 5008; SEQ ID NO 5242; SEQ ID NO 5384 CRK SEQ ID NO 5571 SEQ ID NO 4757 CRYAB SEQ ID NO 5470 SEQ ID NO 4611; SEQ ID NO 4685; SEQ ID NO 4688; SEQ ID NO 4689; SEQ ID NO 4773; SEQ ID NO 4858; SEQ ID NO 4863; SEQ ID NO 4894; SEQ ID NO 4975; SEQ ID NO 5407; SEQ ID NO 5416 CTHRC1 SEQ ID NO 5639 SEQ ID NO 4598 CX3CL1 SEQ ID NO 5490 SEQ ID NO 4630; SEQ ID NO 4951 DHCR7 SEQ ID NO 5459 SEQ ID NO 5025; SEQ ID NO 5339 DKK3 SEQ ID NO 5549 SEQ ID NO 4624; SEQ ID NO 4831; SEQ ID NO 4933; SEQ ID NO 4989; SEQ ID NO 5049; SEQ ID NO 5184; SEQ ID NO 5205; SEQ ID NO 5207; SEQ ID NO 5208; SEQ ID NO 5378 DMD SEQ ID NO 5421 SEQ ID NO 4593; SEQ ID NO 4664; SEQ ID NO 4860; SEQ ID NO 4908; SEQ ID NO 5058; SEQ ID NO 5095; SEQ ID NO 5150; SEQ ID NO 5381; SEQ ID NO 5387; SEQ ID NO 5388; SEQ ID NO 5389; SEQ ID NO 5410 DMN SEQ ID NO 5643 SEQ ID NO 4610; SEQ ID NO 5120; SEQ ID NO 5396 DOCK8 SEQ ID NO 5672 SEQ ID NO 4623; SEQ ID NO 4728; SEQ ID NO 5118 DST SEQ ID NO 5660 SEQ ID NO 4587; SEQ ID NO 4679; SEQ ID NO 5236; SEQ ID NO 5309; SEQ ID NO 5336 EDN3 SEQ ID NO 5673 SEQ ID NO 4714; SEQ ID NO 5405 EGR2 SEQ ID NO 5429 SEQ ID NO 5020; SEQ ID NO 5356 ETV1 SEQ ID NO 5518 SEQ ID NO 4730; SEQ ID NO 5080; SEQ ID NO 5197; SEQ ID NO 5209; SEQ ID NO 5214; SEQ ID NO 5218; SEQ ID NO 5241; SEQ ID NO 5329; SEQ ID NO 5417 ETV5 SEQ ID NO 5511 SEQ ID NO 4999; SEQ ID NO 5330 FAM126A SEQ ID NO 5618 SEQ ID NO 4641; SEQ ID NO 4646; SEQ ID NO 5126; SEQ ID NO 5157 FAM130A2 SEQ ID NO 5609 SEQ ID NO 5149; SEQ ID NO 5281 FAM13A1 SEQ ID NO 5559 SEQ ID NO 4680; SEQ ID NO 4804; SEQ ID NO 5293 FBXL7 SEQ ID NO 5546 SEQ ID NO 4932 FDXR SEQ ID NO 5503 SEQ ID NO 5318 FLJ25770 SEQ ID NO 5684 SEQ ID NO 4735 FMO2 SEQ ID NO 5460 SEQ ID NO 4600; SEQ ID NO 5065 FN1 SEQ ID NO 5675 SEQ ID NO 4608; SEQ ID NO 4609; SEQ ID NO 4636; SEQ ID NO 4649; SEQ ID NO 4842; SEQ ID NO 5015; SEQ ID NO 5022; SEQ ID NO 5098; SEQ ID NO 5141; SEQ ID NO 5164; SEQ ID NO 5165; SEQ ID NO 5183; SEQ ID NO 5186; SEQ ID NO 5258; SEQ ID NO 5307 FRZB SEQ ID NO 5461 SEQ ID NO 5174 FTO SEQ ID NO 5687 SEQ ID NO 4971; SEQ ID NO 5151; SEQ ID NO 5257 FZD1 SEQ ID NO 5497 SEQ ID NO 4652 GABRP SEQ ID NO 5554 SEQ ID NO 4614; SEQ ID NO 5031; SEQ ID NO 5061; SEQ ID NO 5067; SEQ ID NO 5347 GALE SEQ ID NO 5446 SEQ ID NO 4618 GJB3 SEQ ID NO 5602 SEQ ID NO 5262 GLTSCR2 SEQ ID NO 5566 SEQ ID NO 4775; SEQ ID NO 4834; SEQ ID NO 4872 GPM6B SEQ ID NO 5443 SEQ ID NO 5104 GPR177 SEQ ID NO 5444 SEQ ID NO 5051; SEQ ID NO 5267; SEQ ID NO 5298 GRAMD3 SEQ ID NO 5601 SEQ ID NO 4587; SEQ ID NO 4857; SEQ ID NO 4926; SEQ ID NO 4934; SEQ ID NO 5087; SEQ ID NO 5088; SEQ ID NO 5240; SEQ ID NO 5291; SEQ ID NO 5354 GRIA4 SEQ ID NO 5437 SEQ ID NO 4772; SEQ ID NO 5238 GSTA1 SEQ ID NO 5644 SEQ ID NO 4655 GUCY1A3 SEQ ID NO 5438 SEQ ID NO 4716; SEQ ID NO 4886; SEQ ID NO 4913; SEQ ID NO 5044; SEQ ID NO 5070 GYPC SEQ ID NO 5473 SEQ ID NO 5133 HNRNPA1 SEQ ID NO 5612 SEQ ID NO 5273 HOXA7 SEQ ID NO 5538 SEQ ID NO 5005 IFNGR1 SEQ ID NO 5430 SEQ ID NO 4925 IGF1 SEQ ID NO 5435 SEQ ID NO 5414 IL33 SEQ ID NO 5624 SEQ ID NO 4927 IMPAD1 SEQ ID NO 5574 SEQ ID NO 5360 INTS8 SEQ ID NO 5575 SEQ ID NO 4724 IRX1 SEQ ID NO 5603 SEQ ID NO 5140 ITM2A SEQ ID NO 5517 SEQ ID NO 4592 KCTD12 SEQ ID NO 5638 SEQ ID NO 5162 KIAA0101 SEQ ID NO 5556 SEQ ID NO 4648; SEQ ID NO 4808; SEQ ID NO 4809; SEQ ID NO 4904 KIAA2013 SEQ ID NO 5637 SEQ ID NO 4990 KIF11 SEQ ID NO 5512 SEQ ID NO 4988 KIF23 SEQ ID NO 5640 SEQ ID NO 4725; SEQ ID NO 4732; SEQ ID NO 4899 KIF4A SEQ ID NO 5547 SEQ ID NO 4964 KIT SEQ ID NO 5423 SEQ ID NO 5107; SEQ ID NO 5177 KLHL13 SEQ ID NO 5625 SEQ ID NO 4979 KMO SEQ ID NO 5498 SEQ ID NO 4653 KRT13 SEQ ID NO 5648 SEQ ID NO 5261; SEQ ID NO 5351 KRT14 SEQ ID NO 5434 SEQ ID NO 4740; SEQ ID NO 4818; SEQ ID NO 4819; SEQ ID NO 4825; SEQ ID NO 4845; SEQ ID NO 4877; SEQ ID NO 4878; SEQ ID NO 4891; SEQ ID NO 4969 KRT15 SEQ ID NO 5475 SEQ ID NO 4619; SEQ ID NO 4645; SEQ ID NO 4737; SEQ ID NO 4844; SEQ ID NO 4849; SEQ ID NO 4866; SEQ ID NO 4867; SEQ ID NO 4869; SEQ ID NO 4882; SEQ ID NO 4890; SEQ ID NO 4967; SEQ ID NO 4978; SEQ ID NO 5147 KRT16 SEQ ID NO 5525 SEQ ID NO 4826; SEQ ID NO 4881 KRT17 SEQ ID NO 5431 SEQ ID NO 4820; SEQ ID NO 4824; SEQ ID NO 4873; SEQ ID NO 4876; SEQ ID NO 4920; SEQ ID NO 4992; SEQ ID NO 5036; SEQ ID NO 5048 KRT19 SEQ ID NO 5476 SEQ ID NO 4750; SEQ ID NO 4941 KRT28 SEQ ID NO 5657 SEQ ID NO 5154 KRT5 SEQ ID NO 5432 SEQ ID NO 4748; SEQ ID NO 4782; SEQ ID NO 4817; SEQ ID NO 4821; SEQ ID NO 4823; SEQ ID NO 4827; SEQ ID NO 4919; SEQ ID NO 4970; SEQ ID NO 5152; SEQ ID NO 5179; SEQ ID NO 5277; SEQ ID NO 5279; SEQ ID NO 5406 KRT6C SEQ ID NO 5651 SEQ ID NO 4840; SEQ ID NO 5310 KRT7 SEQ ID NO 5524 SEQ ID NO 4896; SEQ ID NO 4995 KRT72 SEQ ID NO 5633 SEQ ID NO 5311 LGR4 SEQ ID NO 5585 SEQ ID NO 4764; SEQ ID NO 5116 LMOD1 SEQ ID NO 5544 SEQ ID NO 4710 LMOD1 SEQ ID NO SEQ ID NO 5280 LMOD1 SEQ ID NO SEQ ID NO 5302 LOC147804 SEQ ID NO 5680 SEQ ID NO 5211 LOC440421 SEQ ID NO 5689 SEQ ID NO 5006 LPHN2 SEQ ID NO 5545 SEQ ID NO 4625; SEQ ID NO 5160 LPHN3 SEQ ID NO 5562 SEQ ID NO 5187 MAF SEQ ID NO 5451 SEQ ID NO 4850; SEQ ID NO 5390 MAGED4B SEQ ID NO 5611 SEQ ID NO 5284 MAML2 SEQ ID NO 5617 SEQ ID NO 4862; SEQ ID NO 5156 MAP2K6 SEQ ID NO 5485 SEQ ID NO 4722; SEQ ID NO 4917 MATN2 SEQ ID NO 5479 SEQ ID NO 4677; SEQ ID NO 4861; SEQ ID NO 5017; SEQ ID NO 5100 MED20 SEQ ID NO 5507 SEQ ID NO 4830 MERTK SEQ ID NO 5536 SEQ ID NO 5124 MFGE8 SEQ ID NO 5530 SEQ ID NO 4580; SEQ ID NO 4711; SEQ ID NO 4765; SEQ ID NO 4839; SEQ ID NO 5301 MGC70870 SEQ ID NO 5686 SEQ ID NO 5201 MID1 SEQ ID NO 5623 SEQ ID NO 4698; SEQ ID NO 4699; SEQ ID NO 4700; SEQ ID NO 4701; SEQ ID NO 4702; SEQ ID NO 4703; SEQ ID NO 4705; SEQ ID NO 4706; SEQ ID NO 5074 MKI67 SEQ ID NO 5480 SEQ ID NO 4754; SEQ ID NO 4790; SEQ ID NO 4884; SEQ ID NO 4921; SEQ ID NO 4954 MME SEQ ID NO 5440 SEQ ID NO 4579; SEQ ID NO 4607; SEQ ID NO 5054 MXI1 SEQ ID NO 5635 SEQ ID NO 5269 MYH11 SEQ ID NO 5599 SEQ ID NO 4602; SEQ ID NO 4697; SEQ ID NO 4870; SEQ ID NO 4972; SEQ ID NO 5053; SEQ ID NO 5103; SEQ ID NO 5323; SEQ ID NO 5361; SEQ ID NO 5365 MYLK SEQ ID NO 5630 SEQ ID NO 4682; SEQ ID NO 4687; SEQ ID NO 4931; SEQ ID NO 5358; SEQ ID NO 5376; SEQ ID NO 5400; SEQ ID NO 5401 MYO18A SEQ ID NO 5632 SEQ ID NO 4907 NCAPG SEQ ID NO 5597 SEQ ID NO 4630 NDRG2 SEQ ID NO 5669 SEQ ID NO 4601; SEQ ID NO 4715; SEQ ID NO 4766; SEQ ID NO 4781; SEQ ID NO 4822; SEQ ID NO 4859; SEQ ID NO 4868; SEQ ID NO 4898; SEQ ID NO 4911; SEQ ID NO 4914; SEQ ID NO 4947; SEQ ID NO 4977; SEQ ID NO 4986; SEQ ID NO 5010; SEQ ID NO 5027; SEQ ID NO 5028; SEQ ID NO 5030; SEQ ID NO 5062; SEQ ID NO 5194; SEQ ID NO 5198; SEQ ID NO 5200; SEQ ID NO 5212; SEQ ID NO 5222; SEQ ID NO 5227; SEQ ID NO 5229; SEQ ID NO 5234; SEQ ID NO 5235; SEQ ID NO 5252; SEQ ID NO 5256; SEQ ID NO 5292; SEQ ID NO 5304; SEQ ID NO 5342; SEQ ID NO 5344; SEQ ID NO 5346; SEQ ID NO 5348; SEQ ID NO 5367 NECAB1 SEQ ID NO 5598 SEQ ID NO 4797 NEFH SEQ ID NO 5593 SEQ ID NO 4976; SEQ ID NO 5266 NEK2 SEQ ID NO 5482 SEQ ID NO 4976 NFIB SEQ ID NO 5526 SEQ ID NO 4628; SEQ ID NO 4767; SEQ ID NO 4833; SEQ ID NO 5271; SEQ ID NO 5370; SEQ ID NO 5371 NME4 SEQ ID NO 5519 SEQ ID NO 4806; SEQ ID NO 5372 NR3C2 SEQ ID NO 5439 SEQ ID NO 4606 NRG1 SEQ ID NO 5552 SEQ ID NO 4713; SEQ ID NO 5084; SEQ ID NO 5085; SEQ ID NO 5086; SEQ ID NO 5148; SEQ ID NO 5393; SEQ ID NO 5394; SEQ ID NO 5395; SEQ ID NO 5412; SEQ ID NO 5413 NTRK2 SEQ ID NO 5532 SEQ ID NO 4946; SEQ ID NO 5056; SEQ ID NO 5121; SEQ ID NO 5178; SEQ ID NO 5385; SEQ ID NO 5386 NUSAP1 SEQ ID NO 5570 SEQ ID NO 4639; SEQ ID NO 4768; SEQ ID NO 4929; SEQ ID NO 5335 ODZ2 SEQ ID NO 5677 SEQ ID NO 4665; SEQ ID NO 5176 OGFRL1 SEQ ID NO 5605 SEQ ID NO 5040 OSR1 SEQ ID NO 5642 SEQ ID NO 4937 P2RY13 SEQ ID NO 5600 SEQ ID NO 4993 PDE1C SEQ ID NO 5520 SEQ ID NO 4657 PDGFRA SEQ ID NO 5533 SEQ ID NO 4918; SEQ ID NO 4938 PELI1 SEQ ID NO 5590 SEQ ID NO 5014 PFKM SEQ ID NO 5425 SEQ ID NO 5380 PIGR SEQ ID NO 5484 SEQ ID NO 4663; SEQ ID NO 4916; SEQ ID NO 5345 PIK3C2G SEQ ID NO 5513 SEQ ID NO 5109; SEQ ID NO 5345 PKD2 SEQ ID NO 5426 SEQ ID NO 5111; SEQ ID NO 5128 PPP1R14A SEQ ID NO 5622 SEQ ID NO 4592; SEQ ID NO 4721; SEQ ID NO 5137 PRC1 SEQ ID NO 5502 SEQ ID NO 4631; SEQ ID NO 4744; SEQ ID NO 4785; SEQ ID NO 4994; SEQ ID NO 5075; SEQ ID NO 5188; SEQ ID NO 5191; SEQ ID NO 5312 PRNP SEQ ID NO 5427 SEQ ID NO 4644; SEQ ID NO 4915 PROS1 SEQ ID NO 5428 SEQ ID NO 5206 PTN SEQ ID NO 5486 SEQ ID NO 4666; SEQ ID NO 5317 PTPRZ1 SEQ ID NO 5487 SEQ ID NO 5064; SEQ ID NO 5112; SEQ ID NO 5125 PTTG1 SEQ ID NO 5506 SEQ ID NO 4885; SEQ ID NO 5073; SEQ ID NO 5136 PZP SEQ ID NO 5488 SEQ ID NO 4673; SEQ ID NO 4738; SEQ ID NO 4851; SEQ ID NO 5313 RACGAP1 SEQ ID NO 5550 SEQ ID NO 4589; SEQ ID NO 5237; SEQ ID NO 5283; SEQ ID NO 5288; SEQ ID NO 5322 RBMS3 SEQ ID NO 5445 SEQ ID NO 4980 RIC3 SEQ ID NO 5604 SEQ ID NO 4612; SEQ ID NO 5140; SEQ ID NO 5155; SEQ ID NO 5270 ROPN1B SEQ ID NO 5447 SEQ ID NO 4718; SEQ ID NO 5144 RPL3 SEQ ID NO 5441 SEQ ID NO 4763; SEQ ID NO 4963 RRM2 SEQ ID NO 5452 SEQ ID NO 4691; SEQ ID NO 4798 S100B SEQ ID NO 5534 SEQ ID NO 4798; SEQ ID NO 4948; SEQ ID NO 4974 S100P SEQ ID NO 5531 SEQ ID NO 4835 SAA1 SEQ ID NO 5665 SEQ ID NO 4690; SEQ ID NO 4813 SAA2 SEQ ID NO 5610 SEQ ID NO 4584; SEQ ID NO 4813; SEQ ID NO 4816; SEQ ID NO 5170; SEQ ID NO 5409 SAMD5 SEQ ID NO 5450 SEQ ID NO 5158 SATB1 SEQ ID NO 5489 SEQ ID NO 4709; SEQ ID NO 4815; SEQ ID NO 4852; SEQ ID NO 4950; SEQ ID NO 5249; SEQ ID NO 5337 SFRP1 SEQ ID NO 5491 SEQ ID NO 4674; SEQ ID NO 4909; SEQ ID NO 5161 SFTPD SEQ ID NO 5492 SEQ ID NO 4674 SIRPA SEQ ID NO 5634 SEQ ID NO 4880; SEQ ID NO 4997; SEQ ID NO 5131; SEQ ID NO 5379 SLC25A27 SEQ ID NO 5508 SEQ ID NO 5253 SLC26A8 SEQ ID NO 5629 SEQ ID NO 4672 SMARCA2 SEQ ID NO 5493 SEQ ID NO 4810 SMC4 SEQ ID NO 5678 SEQ ID NO 4998; SEQ ID NO 5244; SEQ ID NO 5320 SORBS1 SEQ ID NO 5564 SEQ ID NO 4681 SPARCL1 SEQ ID NO 5515 SEQ ID NO 4585; SEQ ID NO 4693; SEQ ID NO 4832; SEQ ID NO 4910; SEQ ID NO 4924; SEQ ID NO 4935; SEQ ID NO 4939; SEQ ID NO 4960; SEQ ID NO 4961; SEQ ID NO 5029; SEQ ID NO 5035; SEQ ID NO 5055; SEQ ID NO 5059; SEQ ID NO 5090; SEQ ID NO 5127; SEQ ID NO 5199; SEQ ID NO 5202; SEQ ID NO 5228; SEQ ID NO 5230; SEQ ID NO 5232; SEQ ID NO 5254; SEQ ID NO 5276; SEQ ID NO 5325; SEQ ID NO 5353 SPG3A SEQ ID NO 5567 SEQ ID NO 4966 SPRY2 SEQ ID NO 5529 SEQ ID NO 4742; SEQ ID NO 4982; SEQ ID NO 5233 TAGLN SEQ ID NO 5442 SEQ ID NO 4594; SEQ ID NO 4662; SEQ ID NO 4906; SEQ ID NO 5024; SEQ ID NO 5082; SEQ ID NO 5355 TANK SEQ ID NO 5505 SEQ ID NO 4895; SEQ ID NO 5069 TESC SEQ ID NO 5576 SEQ ID NO 5360 TF SEQ ID NO 5454 SEQ ID NO 4654; SEQ ID NO 4668; SEQ ID NO 4669; SEQ ID NO 4758; SEQ ID NO 4892; SEQ ID NO 5032; SEQ ID NO 5099; SEQ ID NO 5411 TLE4 SEQ ID NO 5539 SEQ ID NO 4595; SEQ ID NO 4616; SEQ ID NO 4635; SEQ ID NO 4729; SEQ ID NO 4733; SEQ ID NO 4889; SEQ ID NO 5122 TMEM16A SEQ ID NO 5578 SEQ ID NO 4708 TMPRSS2 SEQ ID NO 5528 SEQ ID NO 5231; SEQ ID NO 5247; SEQ ID NO 5296 TOP2A SEQ ID NO 5455 SEQ ID NO 4686; SEQ ID NO 5153 TP63 SEQ ID NO 5499 SEQ ID NO 4588; SEQ ID NO 4590; SEQ ID NO 4653; SEQ ID NO 4828; SEQ ID NO 5043 TPM1 SEQ ID NO 5449 SEQ ID NO 5319 TPM2 SEQ ID NO 5676 SEQ ID NO 4581; SEQ ID NO 4638; SEQ ID NO 4789; SEQ ID NO 4800; SEQ ID NO 4983; SEQ ID NO 5366 TPM3 SEQ ID NO 5649 SEQ ID NO 4634; SEQ ID NO 4741; SEQ ID NO 4769; SEQ ID NO 4771; SEQ ID NO 4799; SEQ ID NO 4800; SEQ ID NO 4803; SEQ ID NO 4875; SEQ ID NO 4985; SEQ ID NO 4987; SEQ ID NO 5264; SEQ ID NO 5265; SEQ ID NO 5274; SEQ ID NO 5299; SEQ ID NO 5308; SEQ ID NO 5315 TPX2 SEQ ID NO 5543 SEQ ID NO 4596; SEQ ID NO 5129 TRIM2 SEQ ID NO 5563 SEQ ID NO 5119 TRIM29 SEQ ID NO 5681 SEQ ID NO 4847; SEQ ID NO 4848; SEQ ID NO 5333; SEQ ID NO 5357; SEQ ID NO 5392 TSHZ2 SEQ ID NO 5652 SEQ ID NO 4962 UBAP2L SEQ ID NO 5558 SEQ ID NO 5072 UBE2C SEQ ID NO 5658 SEQ ID NO 5077; SEQ ID NO 5172; SEQ ID NO 5173; SEQ ID NO 5403; SEQ ID NO 5404 UBE2T SEQ ID NO 5553 SEQ ID NO 4660; SEQ ID NO 5041 UTRN SEQ ID NO 5540 SEQ ID NO 5091 VIM SEQ ID NO 5495 SEQ ID NO 4643 WIF1 SEQ ID NO 5645 SEQ ID NO 5142; SEQ ID NO 5397; SEQ ID NO 5415 YWHAZ SEQ ID NO 5496 SEQ ID NO 4749 ZDHHC2 SEQ ID NO 5569 SEQ ID NO 4768; SEQ ID NO 5106; SEQ ID NO 5260 ZNF462 SEQ ID NO 5595 SEQ ID NO 4851 ZNF521 SEQ ID NO 5565 SEQ ID NO 4723; SEQ ID NO 5195; SEQ ID NO 5196; SEQ ID NO 5219; SEQ ID NO 5321; SEQ ID NO 5359

In another particular embodiment, the invention relates to the use as defined above, for the determination of the variation of expression of 275 determined genes represented by SEQ ID NO 5419 to SEQ ID NO 5693, and of at least one of their variants when they exist, wherein the correspondence between genes and their variants is indicated in the following table 6.

Table 6 summarizes the correspondence between all the sequences disclosed in the invention. In this table:

-   -   SEQ ID NOs 1-2938 represent polynucleotide probes, and targets,         variants and genes they can recognize,     -   SEQ ID NOs 2939-4578 represent target regions, and variant and         genes containing them, and polynucleotide probes recognizing         them,     -   SEQ ID NOs 4579-5418 and SEQ ID NO 5694 represent variants and         their corresponding gene, and target they comprises, and also         polynucleotide probes recognizing them,     -   SEQ ID NOs 5419-5493 represent genes.

In another preferred embodiment, the invention relates to the use of a multiplicity of polynucleotide probe sets for determining the variation of the gene expression as defined above, and of its variants when present, wherein target regions are characterized by the polynucleotide sequences SEQ ID NO 2939 to 4578, each target region of each gene, and of each variant when they exist, being represented in Table 6.

For example, in the invention, for detecting the variation of expression of the group of at least 12 determined genes of the group of 275 genes, each of the 12 genes has the following target region:

-   -   AK5 (SEQ ID NO 5654) contains the following target regions: SEQ         ID NO 2979 and 2988     -   COL17A1 (SEQ ID NO 5683) contains the following target regions:         SEQ ID NO 2944; 2955; 2971; 2973 and 2974,     -   DMD (SEQ ID NO 5421) contains the following target regions: SEQ         ID NO 2939; 2940; 2941; 2942; 2943; 2945; 2947; 2949; 2950;         2952; 2953; 2957; 2961; 2962; 2963; 2964; 2970 and 2980,     -   KIT (SEQ ID NO 5423) contains the following target regions: SEQ         ID NO 2984; 2946; 2951; 2954; 2958; 2960; 2965; 2969; 2975 and         2978     -   KRT16 (SEQ ID NO 5525) contains the following target regions:         SEQ ID NO 2966 and 2972,     -   KRT14 (SEQ ID NO 5434) contains the following target regions:         SEQ ID NO 2946; 2951; 2954; 2958; 2960; 2965; 2969; 2975 and         2978,     -   KRT5 (SEQ ID NO 5432) contains the following target regions: SEQ         ID NO 2985,     -   MYH11 (SEQ ID NO 5599) contains the following target regions:         SEQ ID NO 2948; 2956; 2959; 2967; 2976; 2981; 2982 and 2986,     -   NRG1 (SEQ ID NO 5552) contains the following target regions: SEQ         ID NO 2977,     -   PTN (SEQ ID NO 5486) contains the following target regions: SEQ         ID NO 2983,     -   SFRP1 (SEQ ID NO 5491) contains the following target regions:         SEQ ID NO 2968, and     -   TSHZ2 (SEQ ID NO 5652) contains the following target regions:         SEQ ID NO 2987.

With Table 6, knowing gene and variants, it is easy to identify the sequence of the corresponding target region.

In another particular embodiments, the invention discloses the use of a multiplicity of polynucleotide probe sets for determining the variation of the gene expression as defined above, and/or of their variants when present, wherein each polynucleotide probe contained in a polynucleotide probe set is represented by the nucleic acid sequence of the library consisting in SEQ ID NO 1 to SEQ ID NO 2938, the correspondence between each polynucleotide probe and its corresponding target region, said target region corresponding to a gene and its variants when present, being represented in Table 6.

For example, in the invention, for detecting the variation of expression of the group of at least 12 determined genes of the group of 275 genes, each of the 12 genes is recognized by the following polynucleotide probes:

-   -   AK5 (SEQ ID NO 5654) is recognized by the polynucleotide probes         SEQ ID NO 790; 791; 792; 793; 794 and 795,     -   COL17A1 (SEQ ID NO 5683) is recognized by the polynucleotide         probes SEQ ID NO 157; 158; 159; 167; 168; 169; 171; 172; 173 and         177,     -   DMD (SEQ ID NO 5421) is recognized by the polynucleotide probes         SEQ ID NO 312; 313; 314; 315; 316; 317; 324; 325; 326; 327; 328;         329; 330; 331; 333; 334; 335; 336; 339; 340; 341; 345; 346; 347;         348; 353; 360; 361; 364; 365; 366; 367; 368; 369; 370; 374 and         375,     -   KIT (SEQ ID NO 5423) is recognized by the polynucleotide probes         SEQ ID NO 1081; 1082 and 1083,     -   KRT14 (SEQ ID NO 5434) is recognized by the polynucleotide         probes SEQ ID NO 1165; 1158; 1159; 1160; 1161; 1162; 1166; 1167;         1168; 1169; 1170; 1171; 1185; 1186; 1194; 1198; 1199; 1200 and         1203,     -   KRT16 (SEQ ID NO 5525) is recognized by the polynucleotide         probes SEQ ID NO 1262; 1263; 1264; 1267; 1268 and 1269,     -   KRT5 (SEQ ID NO 5432) is recognized by the polynucleotide probes         SEQ ID NO 1129; 1140 and 1141,     -   MYH11 (SEQ ID NO 5599) is recognized by the polynucleotide         probes SEQ ID NO 1522; 1519; 1520; 1521; 1523; 1524; 1534; 1535;         1536; 1544; 1545; 1546; 1551; 1552; 1553; 1554; 1555; 1556 and         1557,     -   NRG1 (SEQ ID NO 5552) is recognized by the polynucleotide probes         SEQ ID NO 969; 972 and 981,     -   PTN (SEQ ID NO 5486) is recognized by the polynucleotide probes         SEQ ID NO 2026; 2027 and 2028,     -   SFRP1 (SEQ ID NO 5491) is recognized by the polynucleotide         probes SEQ ID NO 2179; 2180 and 2181, and     -   TSHZ2 (SEQ ID NO 5652) is recognized by the polynucleotide         probes SEQ ID NO 136; 137 and 138.     -   To summarize, for the same example of at least 12 determined         genes of the group of 275 genes, the correspondences are the         following ones:     -   NRG1 (SEQ ID NO 5552) and one of its variants (SEQ ID 5084) both         contain the target region SEQ ID 2977, said target region being         recognized by polynucleotide probes SEQ ID NO 969, 972 and 981,     -   PTN (SEQ ID NO 5486) and one of its variants (SEQ ID 4666) both         contain the target region SEQ ID 2983, said target region being         recognized by polynucleotide probes SEQ ID NO 2026, 2027 and         2028,     -   SFRP1 (SEQ ID NO 5491) and one of its variants (SEQ ID 5161)         both contain the target region SEQ ID 2968, said target region         being recognized by polynucleotide probes SEQ ID NO 2179, 2180         and 2181,     -   TSHZ2 (SEQ ID NO 5652) and one of its variants (SEQ ID 4962)         both contain the target region SEQ ID 2987, said target region         being recognized by polynucleotide probes SEQ ID NO 136, 137 and         138,     -   KIT (SEQ ID NO 5423) and one of its variants (SEQ ID 5107) both         contain the target region SEQ ID 2984, said target region being         recognized by polynucleotide probes SEQ ID NO 1081, 1082 and         1083,     -   KRT16 (SEQ ID NO 5525) and two of its variants (SEQ ID 4826         and 4881) are such as         -   KRT5 and SEQ ID 4826 both contain the target region SEQ ID             2972, said target region being recognized by polynucleotide             probes SEQ ID NO 1267, 1268 and 1269, and         -   KRT5 and SEQ ID 4881 both contain the target region SEQ ID             2966, said target region being recognized by polynucleotide             probes SEQ ID NO 1262, 1263 and 1264,     -   KRT5 (SEQ ID NO 5432) and one of its variants (SEQ ID 5279) both         contain the target region SEQ ID 2985, said target region being         recognized by polynucleotide probes SEQ ID NO 1129, 1140 and         1141,     -   KRT14 (SEQ ID NO 5434) and six of its variants (SEQ ID 4819,         4825, 4845, 4877, 4891 and 4969) are such as:         -   KRT14 and SEQ ID 4819 both contain the target regions SEQ ID             2954, 2960 and 2969, said target regions being recognized             respectively by polynucleotide probes SEQ ID NO 116 and             1166, SEQ ID NO 1158 and SEQ ID NO 1159, 1160 and 1161         -   KRT14 and SEQ ID 4825 both contain the target regions SEQ ID             2975 and 2978, said target regions being recognized             respectively by polynucleotide probes SEQ ID NO 1167, 1168             and 1169 and SEQ ID NO 1162, 1170 and 1171,         -   KRT14 and SEQ ID 4845 both contain the target region SEQ ID             2965, said target region being recognized by polynucleotide             probes SEQ ID NO 1203,         -   KRT14 and SEQ ID 4877 both contain the target region SEQ ID             2946, said target region being recognized by polynucleotide             probes SEQ ID NO 1198, 1199 and 1200,         -   KRT14 and SEQ ID 4891 both contain the target region SEQ ID             2958, said target region being recognized by polynucleotide             probes SEQ ID NO 1185, 1186 and 1194, and         -   KRT14 and SEQ ID 4969 both contain the target region SEQ ID             2951, said target region being recognized by polynucleotide             probes SEQ ID NO 1185, 1186 and 1194,     -   MYH11 (SEQ ID NO 5599) and four of its variants (SEQ ID 4697,         4870, 5361 and 5365) are such as:         -   MYH11 and SEQ ID 4697 both contain the target regions SEQ ID             NO 2948 and 2986, said target regions being recognized             respectively by polynucleotide probes SEQ ID NO 1522; 1523             and 1524, and SEQ ID NO 1519; 1520 and 1521         -   MYH11 and SEQ ID 4870 both contain the target regions SEQ ID             2956, 2959, 2981 and 2982, said target regions being             recognized respectively by polynucleotide probes SEQ ID             1551, 1552 and 1553, SEQ ID NO 1523, 1524 and 1557, SEQ ID             NO 1551, 1552 and 1553 and SEQ ID NO 1554, 1555 and 1556,         -   MYH11 and SEQ ID 5361 both contain the target region SEQ ID             2967, said target region being recognized by polynucleotide             probes SEQ ID NO 1534, 1535 and 1536,         -   MYH11 and SEQ ID 5365 both contain the target region SEQ ID             2976, said target region being recognized by polynucleotide             probes SEQ ID NO 1544, 1545 and 1546,     -   AK5 (SEQ ID NO 5654) and one of its variants (SEQ ID 4654) both         contain the target regions SEQ ID 2979 and 2988, said target         regions being respectively recognized by polynucleotide probes         SEQ ID NO 790, 791 and 792, and SEQ ID NO 793, 794 and 795,     -   COL17A1 (SEQ ID NO 5599) and four of its variants (SEQ ID 4739,         4784, 5242 and 5384) are such as:         -   COL17A1 and SEQ ID 4739 both contain the target regions SEQ             ID NO 2944 and 2955, said target regions being recognized             respectively by polynucleotide probes SEQ ID NO 171; 172 and             173, and SEQ ID NO 177,         -   COL17A1 and SEQ ID 4784 both contain the target region SEQ             ID NO 2973, said target region being recognized by             polynucleotide probes SEQ ID NO 167, 168 and 169,         -   COL17A1 and SEQ ID 5242 both contain the target region SEQ             ID 2974, said target region being recognized by             polynucleotide probes SEQ ID NO 167, 168 and 177,         -   COL17A1 and SEQ ID 5384 both contain the target region SEQ             ID 2971, said target region being recognized by             polynucleotide probes SEQ ID NO 157, 158 and 159,     -   DMD (SEQ ID NO 5421) and seven of its variants (SEQ ID NO 4664,         4860, 5058, 5095, 5150, 5381 and 5410) are such as:         -   DMD and SEQ ID 4664 both contain the target regions SEQ ID             NO 294 and 2947, said target regions being recognized             respectively by polynucleotide probes SEQ ID NO 312, 313 and             314, and SEQ ID NO 315, 316 and 317         -   DMD and SEQ ID 4860 both contain the target region SEQ ID             2940, said target region being recognized by polynucleotide             probes SEQ ID NO 364, 365 and 366,         -   DMD and SEQ ID 5058 both contain the target region SEQ ID             2950, said target region being recognized by polynucleotide             probes SEQ ID NO 353, 360 and 361,         -   DMD and SEQ ID 5095 both contain the target regions SEQ ID             2939, 2942, 2945, 2949, 2953, 2961, 2963, 2964 and 2970,             said target region being respectively recognized by             polynucleotide probes             -   SEQ ID NO 333, 334 and 335,             -   SEQ ID NO 312, 313 and 348,             -   SEQ ID NO 315, 331 and 336,             -   SEQ ID NO 339, 340 and 341,             -   SEQ ID NO 324, 325 and 326,             -   SEQ ID NO 345, 346 and 347,             -   SEQ ID NO 315, 330 and 331,             -   SEQ ID NO 327, 328 and 329, and             -   SEQ ID NO 327, 328 and 329,         -   DMD and SEQ ID 5150 both contain the target region SEQ ID             2980, said target region being recognized by polynucleotide             probes SEQ ID NO 368, 374 and 375,         -   DMD and SEQ ID 5381 both contain the target regions SEQ ID             2941, 2952 and 2962, said target regions being respectively             recognized by polynucleotide probes SEQ ID NO 364, 365 and             366, SEQ ID NO 315, 316 and 370, and SEQ ID NO 367, 368 and             369,         -   DMD and SEQ ID 5410 both contain the target region SEQ ID             2957, said target region being recognized by polynucleotide             probes SEQ ID NO 315, 316 and 370.

Using Table 6, and knowing genes and variants, it is easy to identify the sequence of the corresponding target region and probes.

The invention also relates to the use of a multiplicity of at least 50 polynucleotide probe sets chosen among 1640 polynucleotide probe sets, the nucleic acid sequences of the polynucleotide probes contained in said 50 polynucleotide probe sets being the following nucleic acid sequences: SEQ ID NOs 136; 137; 138; 157; 158; 159; 167; 168; 169; 171; 172; 173; 177; 312; 313; 313; 314; 315; 316; 317; 324; 325; 326; 327; 328; 329; 330; 331; 333; 334; 335; 336; 339; 340; 341; 345; 346; 347; 348; 353; 360; 361; 364; 365; 366; 367; 368; 369; 370; 374; 375; 790; 791; 792; 793; 794; 795; 969; 972; 981; 1081; 1082; 1083; 1129; 1140; 1141; 1158; 1159; 1160; 1161; 1162; 1165; 1166; 1167; 1168; 1169; 1170; 1171; 1185; 1186; 1194; 1198; 1199; 1200; 1203; 1262; 1263; 1264; 1267; 1268; 1269; 1519; 1520; 1521; 1522; 1523; 1524; 1534; 1535; 1536; 1544; 1545; 1546; 1551; 1552; 1553; 1554; 1555; 1556; 1557; 2026; 2027; 2028; 2179; 2180 and 2181,

each polynucleotide probe set containing from 1 to 4 of said polynucleotide probes, for the determination of the variation of expression of:

-   -   at least 12 determined genes belonging to a group of genes         represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ         ID NO: 5693 and     -   at least one variant of said genes of at least 12 determined         genes, when they exist,     -   said 12 determined genes being represented by the following         nucleotidic sequences:     -   SEQ ID NOs 5421; 5423; 5432; 5434; 5486; 5491; 5525; 5552; 5599;         5652; 5654 and 5683 and the corresponding variants being         represented in table 1A         in order to diagnose in vitro or ex vivo the benign or malignant         state of a breast tumor.

In one preferred embodiment, the invention relates to the use as defined above, wherein the polynucleotide probes contained in said at least 50 polynucleotide probe sets are as mentioned above and wherein SEQ ID NOs 167; 168; 177; 312; 313; 327; 328; 329; 331; 364; 365; 366; 368; 370; 1185; 1186; 1194; 1523; 1524; 1551; 1552 and 1553 are present twice, SEQ ID NO 316 is present in three copies and SEQ ID NO 315 is present in 5 copies.

Thus, in all the 50 polynucleotide probe sets mentioned above, 143 polynucleotide probes are present, the above mentioned polynucleotide probes being present at least once, and in particular SEQ ID NOs 167; 168; 177; 312; 313; 327; 328; 329; 331; 364; 365; 366; 368; 370; 1185; 1186; 1194; 1523; 1524; 1551; 1552 and 1553 are present twice, SEQ ID NO 316 is present in three copies and SEQ ID NO 315 is present in 5 copies.

The above mentioned polynucleotide probes contained in the 50 nucleotides probe sets specifically recognized the above mentioned gene and their variant when present via target region, the correspondence being deduced from Table 6.

In one preferred embodiment, the invention relates to the use of a multiplicity of at least 100 polynucleotide probe sets as defined above, the nucleic acid sequence of the polynucleotides probes contained in said 100 polynucleotide probe sets being the following nucleic acid sequences: SEQ ID NO 120; 136; 137; 138; 154; 155; 156; 157; 158; 159; 167; 168; 169; 171; 172; 173; 174; 175; 176; 177; 312; 313; 314; 315; 316; 316; 317; 324; 325; 326; 327; 328; 329; 330; 331; 332; 333; 334; 335; 336; 337; 338; 339; 340; 341; 345; 346; 347; 348; 349; 350; 351; 352; 353; 354; 355; 356; 360; 361; 363; 364; 365; 366; 367; 368; 369; 370; 371; 374; 375; 376; 378; 379; 380; 381; 555; 556; 557; 558; 560; 561; 562; 566; 567; 788; 789; 790; 791; 792; 793; 794; 795; 800; 801; 802; 821; 822; 823; 969; 971; 972; 981; 1056; 1057; 1058; 1075; 1076; 1077; 1081; 1082; 1083; 1087; 1088; 1089; 1103; 1104; 1105; 1114; 1115; 1116; 1123; 1124; 1125; 1129; 1130; 1131; 1140; 1141; 1158; 1159; 1160; 1161; 1162; 1163; 1164; 1165; 1166; 1167; 1168; 1169; 1170; 1171; 1172; 1180; 1181; 1185; 1186; 1187; 1188; 1189; 1190; 1191; 1192; 1193; 1194; 1195; 1196; 1198; 1199; 1200; 1201; 1202; 1203; 1207; 1262; 1263; 1264; 1267; 1268; 1269; 1509; 1510; 1511; 1519; 1520; 1521; 1522; 1523; 1524; 1528; 1529; 1534; 1535; 1536; 1544; 1545; 1546; 1551; 1552; 1553; 1554; 1555; 1556; 1557; 1561; 1562; 1682; 1683; 1684; 1776; 1777; 1778; 2023; 2024; 2025; 2026; 2027; 2028; 2173; 2174; 2175; 2176; 2177; 2178; 2179; 2180; 2181; 2762; 2763; 2764; 2860; 2861; 2862; 2883; 2884 and 2885,

each polynucleotide probe set containing from 1 to 4 of said polynucleotide probes, for the determination of the variation of expression of

-   -   at least 20 determined genes belonging to a group of determined         genes represented by the nucleotidic sequences SEQ ID NO: 5419         to SEQ ID NO: 5693 and     -   at least one variant of said genes at least 20 determined genes,         when they exist,     -   said 20 determined genes being represented by the following         nucleotidic sequences:     -   SEQ ID Nos 5421; 5423; 5432; 5434; 5457; 5486; 5491; 5513; 5516;         5525; 5532; 5552; 5599; 5616; 5624; 5643; 5652; 5654; 5673 and         5683 and the corresponding variants being represented in table         1B         in order to diagnose in vitro or ex vivo the benign or malignant         state of a breast tumor.

In one preferred embodiment, the invention relates to the use as defined above, wherein the polynucleotide probes contained in said at least 100 polynucleotide probe sets are as mentioned above and wherein SEQ ID NOs 167; 168; 177; 312; 313; 316; 317; 327; 329; 330; 353; 361; 364; 365; 366; 367; 368; 369; 370; 821; 822; 823; 1129; 1164; 1185; 1186; 1187; 1188; 1189; 1203; 1523; 1551; 1552 and 1553 are present twice, SEQ ID NOs 328; 331; 1162; 1194; 1519; 1520; 1521 and 1524 are present in three copies and SEQ ID NO 315 is present in 6 copies.

Thus, in all the 100 polynucleotide probe sets mentioned above, 282 polynucleotide probes are present, the above mentioned polynucleotide probes being present at least once, and in particular SEQ ID NOs 167; 168; 177; 312; 313; 316; 317; 327; 329; 330; 353; 361; 364; 365; 366; 367; 368; 369; 370; 821; 822; 823; 1129; 1164; 1185; 1186; 1187; 1188; 1189; 1203; 1523; 1551; 1552 and 1553 are present twice, SEQ ID NOs 328; 331; 1162; 1194; 1519; 1520; 1521 and 1524 are present in three copies and SEQ ID NO 315 is present in 6 copies.

The above mentioned polynucleotide probes contained in the 100 nucleotides probe sets specifically recognized the above mentioned gene and their variant when present via target region, the correspondence being deduced from Table 6.

In another preferred embodiment, the invention relates to the use of a multiplicity of at least 150 polynucleotide probe sets as previously defined, the nucleic acid sequence of the polynucleotides probes contained in said 150 polynucleotide probe sets being the following nucleic acid sequences: SEQ ID NOs 4; 5; 6; 120; 136; 137; 138; 154; 155; 156; 157; 158; 159; 167; 168; 169; 171; 172; 173; 174; 175; 176; 177; 197; 248; 254; 255; 305; 306; 307; 312; 313; 314; 315; 316; 317; 324; 325; 326; 327; 328; 329; 330; 331; 332; 333; 334; 335; 336; 337; 338; 339; 340; 341; 345; 346; 347; 348; 349; 350; 351; 352; 353; 354; 355; 356; 360; 361; 362; 363; 364; 365; 366; 367; 367; 368; 369; 370; 371; 374; 375; 376; 377; 378; 379; 380; 381; 513; 514; 515; 552; 553; 554; 555; 556; 557; 558; 559; 560; 561; 562; 566; 567; 783; 784; 785; 788; 789; 790; 791; 792; 793; 794; 795; 796; 797; 798; 799; 800; 801; 802; 803; 804; 805; 806; 807; 808; 812; 813; 814; 818; 821; 822; 823; 968; 969; 970; 971; 972; 981; 1056; 1057; 1058; 1061; 1062; 1063; 1064; 1065; 1066; 1067; 1068; 1069; 1070; 1071; 1075; 1076; 1077; 1080; 1081; 1082; 1083; 1087; 1088; 1089; 1103; 1104; 1105; 1114; 1115; 1116; 1123; 1124; 1125; 1129; 1130; 1131; 1139; 1140; 1141; 1158; 1159; 1160; 1161; 1162; 1163; 1164; 1165; 1166; 1167; 1168; 1169; 1170; 1171; 1172; 1174; 1175; 1176; 1180; 1181; 1185; 1186; 1187; 1188; 1189; 1190; 1191; 1192; 1193; 1194; 1195; 1196; 1197; 1198; 1199; 1200; 1201; 1202; 1203; 1204; 1205; 1206; 1207; 1262; 1263; 1264; 1267; 1268; 1269; 1284; 1285; 1315; 1469; 1470; 1471; 1509; 1510; 1511; 1515; 1516; 1517; 1519; 1520; 1521; 1522; 1523; 1524; 1528; 1529; 1534; 1535; 1536; 1537; 1538; 1539; 1544; 1545; 1546; 1550; 1551; 1552; 1553; 1554; 1555; 1556; 1557; 1558; 1559; 1560; 1561; 1562; 1580; 1581; 1582; 1671; 1682; 1683; 1684; 1685; 1686; 1690; 1691; 1692; 1776; 1777; 1778; 1788; 1789; 1790; 1890; 1891; 1892; 1952; 1953; 1954; 1963; 2023; 2024; 2025; 2026; 2027; 2028; 2065; 2067; 2088; 2089; 2090; 2091; 2173; 2174; 2175; 2176; 2177; 2178; 2179; 2180; 2181; 2196; 2201; 2229; 2230; 2231; 2536; 2537; 2538; 2576; 2577; 2578; 2599; 2600; 2762; 2763; 2764; 2774; 2775; 2776; 2860; 2861; 2862; 2883; 2884 and 2885,

each polynucleotide probe set containing from 1 to 4 of said polynucleotide probes, for the determination of the variation of expression of

-   -   at least 35 determined genes belonging to a group of determined         genes represented by the nucleotidic sequences SEQ ID NO: 5419         to SEQ ID NO: 5693 and     -   at least one variant of said genes at least 35 determined genes,         when they exist,     -   said 35 determined genes being represented by the following         nucleotidic sequences:     -   SEQ ID Nos 5421; 5423; 5431; 5432; 5434; 5440; 5457; 5462; 5470;         5486; 5491; 5505; 5513; 5516; 5525; 5532; 5546; 5552; 5594;         5599; 5601; 5603; 5616; 5618; 5624; 5627; 5630; 5643; 5645;         5652; 5654; 5660; 5669; 5673 and 5683, and the corresponding         variants being represented in table 1C         in order to diagnose in vitro or ex vivo the benign or malignant         state of a breast tumor.

In one preferred embodiment, the invention relates to the use as defined above, wherein the polynucleotide probes contained in said at least 150 polynucleotide probe sets are as mentioned above and wherein SEQ ID NOs 167; 168; 177; 312; 313; 317; 327; 329; 330; 353; 361; 363; 364; 365; 366; 369; 370; 371; 558; 567; 796; 797; 801; 806; 807; 808; 813; 814; 821; 822; 823; 969; 1056; 1057; 1058; 1129; 1141; 1163; 1164; 1185; 1186; 1187; 1188; 1189; 1199; 1203; 1469; 1470; 1471; 1523; 1551; 1552 and 1553 are present twice, SEQ ID NOs 316; 328; 331; 368; 788; 1194; 1519; 1520; 1521; 1524 are present in three copies, SEQ ID NO 1162 is present in 4 copies and SEQ ID NO 315 is present in 6 copies.

Thus, in all the 150 polynucleotide probe sets mentioned above, 422 polynucleotide probes are present, the above mentioned polynucleotide probes being present at least once, and in particular SEQ ID NOs 167; 168; 177; 312; 313; 317; 327; 329; 330; 353; 361; 363; 364; 365; 366; 369; 370; 371; 558; 567; 796; 797; 801; 806; 807; 808; 813; 814; 821; 822; 823; 969; 1056; 1057; 1058; 1129; 1141; 1163; 1164; 1185; 1186; 1187; 1188; 1189; 1199; 1203; 1469; 1470; 1471; 1523; 1551; 1552 and 1553 are present twice, SEQ ID NOs 316; 328; 331; 368; 788; 1194; 1519; 1520; 1521; 1524 are present in three copies, SEQ ID NO 1162 is present in 4 copies and SEQ ID NO 315 is present in 6 copies.

The above mentioned polynucleotide probes contained in the 150 nucleotides probe sets specifically recognized the above mentioned gene and their variant when present via target region, the correspondence being deduced from Table 6.

A preferred embodiment of the invention relates to the use of a multiplicity of at least 200 polynucleotide probe sets as defined above, the nucleic acid sequence of the polynucleotide probes contained in said 200 polynucleotide probe sets being the following nucleic acid sequences: SEQ ID NOs 4; 5; 6; 120; 121; 122; 123; 130; 131; 132; 136; 137; 138; 154; 155; 156; 157; 158; 159; 167; 168; 169; 171; 172; 173; 174; 175; 176; 177; 195; 196; 197; 198; 199; 200; 248; 254; 255; 305; 306; 307; 312; 313; 314; 315; 316; 317; 324; 325; 326; 327; 328; 329; 330; 331; 332; 333; 334; 335; 336; 337; 338; 339; 340; 341; 345; 346; 347; 348; 349; 350; 351; 352; 353; 354; 355; 356; 360; 361; 362; 363; 364; 365; 366; 367; 368; 369; 370; 371; 374; 375; 376; 377; 378; 379; 380; 381; 513; 514; 515; 552; 553; 554; 555; 556; 557; 558; 559; 560; 561; 562; 563; 564; 565; 566; 567; 783; 784; 785; 788; 789; 790; 791; 792; 793; 794; 795; 796; 797; 798; 799; 800; 801; 802; 803; 804; 805; 806; 807; 808; 809; 810; 811; 812; 813; 814; 815; 816; 817; 818; 821; 822; 823; 824; 825; 826; 840; 841; 845; 846; 847; 868; 968; 969; 970; 971; 972; 973; 974; 975; 976; 977; 981; 1056; 1057; 1058; 1059; 1060; 1061; 1062; 1063; 1064; 1065; 1066; 1067; 1068; 1069; 1070; 1071; 1075; 1076; 1077; 1080; 1081; 1082; 1083; 1084; 1085; 1086; 1087; 1088; 1089; 1094; 1095; 1096; 1103; 1104; 1105; 1110; 1111; 1112; 1114; 1115; 1116; 1123; 1124; 1125; 1126; 1127; 1128; 1129; 1130; 1131; 1139; 1140; 1141; 1158; 1159; 1160; 1161; 1162; 1163; 1164; 1165; 1166; 1167; 1168; 1169; 1170; 1171; 1172; 1174; 1175; 1176; 1180; 1181; 1185; 1186; 1187; 1188; 1189; 1190; 1191; 1192; 1193; 1194; 1195; 1196; 1197; 1198; 1199; 1200; 1201; 1202; 1203; 1204; 1205; 1206; 1207; 1229; 1230; 1242; 1243; 1244; 1245; 1250; 1251; 1252; 1262; 1263; 1264; 1265; 1266; 1267; 1268; 1269; 1270; 1271; 1272; 1284; 1285; 1315; 1335; 1407; 1408; 1469; 1470; 1471; 1509; 1510; 1511; 1512; 1513; 1514; 1515; 1516; 1517; 1519; 1520; 1521; 1522; 1523; 1524; 1528; 1529; 1534; 1535; 1536; 1537; 1538; 1539; 1544; 1545; 1546; 1550; 1551; 1552; 1553; 1554; 1555; 1556; 1557; 1558; 1559; 1560; 1561; 1562; 1563; 1564; 1580; 1581; 1582; 1586; 1587; 1588; 1671; 1682; 1683; 1684; 1685; 1686; 1687; 1688; 1689; 1690; 1691; 1692; 1743; 1744; 1745; 1776; 1777; 1778; 1788; 1789; 1790; 1890; 1891; 1892; 1896; 1897; 1898; 1952; 1953; 1954; 1963; 1974; 2023; 2024; 2025; 2026; 2027; 2028; 2061; 2062; 2063; 2065; 2067; 2068; 2072; 2083; 2084; 2085; 2088; 2089; 2090; 2091; 2092; 2173; 2174; 2175; 2176; 2177; 2178; 2179; 2180; 2181; 2196; 2201; 2229; 2230; 2231; 2381; 2382; 2383; 2536; 2537; 2538; 2576; 2577; 2578; 2599; 2600; 2601; 2602; 2603; 2762; 2763; 2764; 2774; 2775; 2776; 2778; 2779; 2783; 2794; 2860; 2861; 2862; 2883; 2884 and 2885,

for the determination of the variation of expression of

-   -   at least 43 determined genes belonging to a group of determined         genes represented by the nucleotidic sequences SEQ ID NO: 5419         to SEQ ID NO: 5693 and     -   at least one variant of said determined genes at least 43 genes,         when they exist,     -   said 43 determined genes being represented by the following         nucleotidic sequences:     -   SEQ ID Nos 5421; 5423; 5431; 5432; 5434; 5440; 5455; 5457; 5462;         5470; 5475; 5486; 5491; 5499; 5505; 5513; 5516; 5520; 5525;         5532; 5546; 5549; 5552; 5594; 5599; 5601; 5603; 5616; 5618;         5623; 5624; 5627; 5630; 5643; 5645; 5651; 5652; 5654; 5660;         5669; 5673; 5683 and 5686, and the corresponding variants being         represented in table 1D,         in order to diagnose in vitro or ex vivo the benign or malignant         state of a breast tumor.

In one preferred embodiment, the invention relates to the use as defined above, wherein the polynucleotide probes contained in said at least 200 polynucleotide probe sets are as mentioned above and wherein SEQ ID NOs 167; 168; 177; 312; 313; 317; 327; 329; 330; 353; 361; 363; 364; 365; 366; 367; 369; 370; 371; 558; 567; 796; 797; 801; 806; 807; 808; 813; 814; 821; 822; 823; 845; 968; 970; 972; 1056; 1057; 1058; 1085; 1114; 1115; 1116; 1123; 1124; 1125; 1129; 1141; 1163; 1164; 1185; 1186; 1187; 1188; 1189; 1199; 1203; 1523; 1551; 1552; 1553; 1557; 1586; 1587; 1588; 1952; 1953; 1954; 2088; 2090; 2091; 2762; 2763 and 2764 are present twice, SEQ ID NOs 316; 328; 331; 368; 788; 1284; 1285; 1469; 1470; 1471; 1519; 1520; 1521; 1524; 2065; 2067 and 2089 are present in three copies, SEQ ID NO 1194 is present in 4 copies and SEQ ID NOs 315 and 1162 are present in 6 copies.

Thus, in all the 200 polynucleotide probe sets mentioned above, 565 polynucleotide probes are present, the above mentioned polynucleotide probes being present at least once, and in particular SEQ ID NOs 167; 168; 177; 312; 313; 317; 327; 329; 330; 353; 361; 363; 364; 365; 366; 367; 369; 370; 371; 558; 567; 796; 797; 801; 806; 807; 808; 813; 814; 821; 822; 823; 845; 968; 970; 972; 1056; 1057; 1058; 1085; 1114; 1115; 1116; 1123; 1124; 1125; 1129; 1141; 1163; 1164; 1185; 1186; 1187; 1188; 1189; 1199; 1203; 1523; 1551; 1552; 1553; 1557; 1586; 1587; 1588; 1952; 1953; 1954; 2088; 2090; 2091; 2762; 2763 and 2764 are present twice, SEQ ID NOs 316; 328; 331; 368; 788; 1284; 1285; 1469; 1470; 1471; 1519; 1520; 1521; 1524; 2065; 2067 and 2089 are present in three copies, SEQ ID NO 1194 is present in 4 copies and SEQ ID NOs 315 and 1162 are present in 6 copies.

The above mentioned polynucleotide probes contained in the 200 nucleotides probe sets specifically recognized the above mentioned gene and their variant when present via target region, the correspondence being deduced from Table 6.

The multiplicities mentioned above are considered as the “Top Polynucleotide Probe Sets”.

In another preferred embodiment, the invention relates to the use of a multiplicity of at least 1228 polynucleotide probe sets as defined above, containing 3985 polynucleotide probes, the nucleic acid sequence of the polynucleotide probes contained in said 1228 polynucleotide probe sets being represented in the first 1228 lines of the Table 7,

for the determination of the variation of expression of for determining the variation of the expression of

-   -   at least 206 determined genes belonging to a group of determined         genes represented by the nucleotidic sequences SEQ ID NO: 5419         to SEQ ID NO: 5693 and     -   at least one variant of said genes at least 206 genes, when they         exist,     -   said 206 genes being represented by the following nucleotidic         sequences:

SEQ ID Nos 5420; 5421; 5422; 5423; 5425; 5426; 5427; 5428; 5429; 5430; 5431; 5432; 5434; 5435; 5436; 5437; 5438; 5439; 5440; 5441; 5442; 5443; 5444; 5445; 5446; 5447; 5449; 5450; 5451; 5452; 5453; 5454; 5455; 5456; 5457; 5459; 5460; 5461; 5462; 5463; 5465; 5467; 5468; 5470; 5473; 5475; 5476; 5479; 5480; 5482; 5484; 5485; 5486; 5487; 5488; 5489; 5490; 5491; 5492; 5493; 5495; 5496; 5497; 5498; 5499; 5502; 5503; 5505; 5506; 5507; 5508; 5509; 5511; 5512; 5513; 5515; 5516; 5517; 5518; 5519; 5520; 5523; 5524; 5525; 5526; 5528; 5529; 5530; 5531; 5532; 5533; 5534; 5536; 5538; 5539; 5540; 5543; 5544; 5545; 5546; 5547; 5549; 5550; 5552; 5553; 5554; 5556; 5558; 5559; 5560; 5562; 5563; 5564; 5565; 5566; 5567; 5568; 5569; 5570; 5571; 5573; 5574; 5575; 5576; 5577; 5578; 5581; 5582; 5585; 5587; 5588; 5590; 5591; 5593; 5594; 5595; 5597; 5598; 5599; 5600; 5601; 5602; 5603; 5604; 5605; 5606; 5608; 5609; 5610; 5611; 5612; 5613; 5615; 5616; 5617; 5618; 5622; 5623; 5624; 5625; 5627; 5629; 5630; 5631; 5632; 5633; 5634; 5635; 5637; 5638; 5639; 5640; 5641; 5642; 5643; 5644; 5645; 5647; 5648; 5649; 5651; 5652; 5653; 5654; 5656; 5657; 5658; 5660; 5661; 5665; 5667; 5669; 5672; 5673; 5675; 5676; 5677; 5678; 5680; 5681; 5683; 5684; 5686; 5687; 5689 and 5692, and the corresponding variants being represented in table 1E,

in order to diagnose in vitro or ex vivo the benign or malignant state of a breast tumor.

Thus, in all the 1228 polynucleotide probe sets mentioned above, 3427 polynucleotide probes are present.

Also, a preferred embodiment of the invention discloses the use of a multiplicity of 1640 polynucleotide probe sets as defined above, the nucleic acid sequence of the polynucleotide probes contained in said 1640 polynucleotide probe sets being represented in Table 7,

for the determination of the variation of expression of

-   -   275 determined genes represented by the nucleotidic sequences         SEQ ID NO: 5419 to SEQ ID NO: 5693 and     -   at least one variant of said genes 275 determined genes, when         they exist, the correspondence being mentioned in table 6,     -   in order to diagnose in vitro or ex vivo the benign or malignant         state of a breast tumor.

Thus, in all the 1640 polynucleotide probe sets mentioned above, 4586 polynucleotide probes are present.

In another embodiment, the invention discloses the use of a multiplicity of polynucleotide probe sets, wherein the sub-group of genes is constituted by 12 to 259 genes chosen among the group of genes consisting in SEQ ID NO 5419 to SEQ ID NO 5677.

The sub-groups of genes contain at least 12 genes, as described above. The sub-group of genes can also contain advantageously 19 genes, or advantageously 32 genes, or advantageously 40 genes, or advantageously 214 genes or more advantageously 259 genes.

According to the invention, each gene of the sub-groups of genes, and/or its variants when they exist, are specifically recognized by at least one polynucleotide probe belonging to a polynucleotide probe set of a pool of polynucleotide probe sets.

In a more particular embodiment, the invention relates to the use of a multiplicity of polynucleotide probe sets, wherein the sub-group of genes is constituted by the 259 genes of the group consisting in SEQ ID NO 5419 to SEQ ID NO 5693.

The inventors have unexpectedly demonstrated that a group of 259 genes, and/or their variants when they exist, give some powerful information to precisely determine the benign or malignant status of a breast tumor.

In the group of 259 genes, each gene, and its variants when they exist is specifically recognized by at least one polynucleotide probe belonging to a polynucleotide probe set of a pool of polynucleotide probe sets.

In another advantageous embodiment, the invention discloses the use of a multiplicity of polynucleotide probe sets, wherein the polynucleotide probe sets are chosen among at least 50 polynucleotide probe sets, particularly at least 100 polynucleotide probe sets, more particularly at least 150 polynucleotide probe sets, more particularly at least 200 polynucleotide probe sets, more particularly at least 1228 polynucleotide probe sets, and more particularly 1640 polynucleotide probe sets of the library of nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO 2938.

The multiplicity of polynucleotide probe sets is of at least 50 polynucleotide probe sets, and particularly at least 100 polynucleotide probe sets, more particularly at least 150 polynucleotide probe sets, and more advantageously at least 200 polynucleotide probe sets.

These multiplicities are considered as the “Top Polynucleotide Probe Sets”.

The Top 50 polynucleotide probe sets contains a combination of polynucleotide probes characterized by SEQ ID NO 138, SEQ ID NO 140, SEQ ID NO 157, SEQ ID NO 159, SEQ ID NO 167, SEQ ID NO 168, SEQ ID NO 169, SEQ ID NO 171, SEQ ID NO 173, SEQ ID NO 177, SEQ ID NO 312, SEQ ID NO 314, SEQ ID NO 315, SEQ ID NO 317, SEQ ID NO 324, SEQ ID NO 326, SEQ ID NO 327, SEQ ID NO 329, SEQ ID NO 330, SEQ ID NO 331 SEQ ID NO 333, SEQ ID NO 335, SEQ ID NO 336, SEQ ID NO 339, SEQ ID NO 341, SEQ ID NO 345, SEQ ID NO 347, SEQ ID NO 353, SEQ ID NO 360, SEQ ID NO 361, SEQ ID NO 364, SEQ ID NO 366, SEQ ID NO 367, SEQ ID NO 369, SEQ ID NO 790, SEQ ID NO 792, SEQ ID NO 793, SEQ ID NO 795, SEQ ID NO 969, SEQ ID NO 972, SEQ ID NO 981, SEQ ID NO 1081, SEQ ID NO 1083, SEQ ID NO 1129, SEQ ID NO 1140, SEQ ID NO 1141, SEQ ID NO 1151, SEQ ID NO 1158, SEQ ID NO 1159, SEQ ID NO 1162, SEQ ID NO 1165, SEQ ID NO 1166, SEQ ID NO 1167, SEQ ID NO 1169, SEQ ID NO 1170, SEQ ID NO 1171, SEQ ID NO 1185, SEQ ID NO 1186, SEQ ID NO 1194, SEQ ID NO 1198, SEQ ID NO 1200, SEQ ID NO 1203, SEQ ID NO 1262, SEQ ID NO 1264, SEQ ID NO 1267, SEQ ID NO 1269, SEQ ID NO 1520, SEQ ID NO 1522, SEQ ID NO 1523, SEQ ID NO 1524, SEQ ID NO 1534, SEQ ID NO 1536, SEQ ID NO 1544, SEQ ID NO 1546, SEQ ID NO 1551, SEQ ID NO 1553, SEQ ID NO 1554, SEQ ID NO 1556, SEQ ID NO 1557, SEQ ID NO 2026, SEQ ID NO 2028, SEQ ID NO 2179 and SEQ ID NO 2181.

The Top 100 polynucleotide probe set contains a combination of polynucleotide probes characterized by SEQ ID NO 120, SEQ ID NO 138, SEQ ID NO 140, SEQ ID NO 154, SEQ ID NO 155, SEQ ID NO 156, SEQ ID NO 157, SEQ ID NO 159, SEQ ID NO 166, SEQ ID NO 167, SEQ ID NO 168, SEQ ID NO 169, SEQ ID NO 171, SEQ ID NO 173, SEQ ID NO 174, SEQ ID NO 175, SEQ ID NO 176, SEQ ID NO 177, SEQ ID NO 312, SEQ ID NO 314, SEQ ID NO 315, SEQ ID NO 317, SEQ ID NO 324, SEQ ID NO 326, SEQ ID NO 327, SEQ ID NO 328, SEQ ID NO 329, SEQ ID NO 330, SEQ ID NO 331, SEQ ID NO 331, SEQ ID NO 332, SEQ ID NO 333, SEQ ID NO 335, SEQ ID NO 336, SEQ ID NO 337, SEQ ID NO 338, SEQ ID NO 339, SEQ ID NO 341, SEQ ID NO 345, SEQ ID NO 347, SEQ ID NO 349, SEQ ID NO 350, SEQ ID NO 351, SEQ ID NO 352, SEQ ID NO 353, SEQ ID NO 354, SEQ ID NO 355, SEQ ID NO 356, SEQ ID NO 360, SEQ ID NO 361, SEQ ID NO 363, SEQ ID NO 364, SEQ ID NO 364, SEQ ID NO 366, SEQ ID NO 367, SEQ ID NO 369, SEQ ID NO 369, SEQ ID NO 371, SEQ ID NO 376, SEQ ID NO 378, SEQ ID NO 379, SEQ ID NO 380, SEQ ID NO 381, SEQ ID NO 555, SEQ ID NO 556, SEQ ID NO 557, SEQ ID NO 558, SEQ ID NO 560, SEQ ID NO 561, SEQ ID NO 562, SEQ ID NO 566, SEQ ID NO 567, SEQ ID NO 788, SEQ ID NO 789, SEQ ID NO 790, SEQ ID NO 792, SEQ ID NO 793, SEQ ID NO 795, SEQ ID NO 800, SEQ ID NO 801, SEQ ID NO 802, SEQ ID NO 821, SEQ ID NO 822, SEQ ID NO 823, SEQ ID NO 969, SEQ ID NO 971, SEQ ID NO 972, SEQ ID NO 981, SEQ ID NO 1056, SEQ ID NO 1057, SEQ ID NO 1058, SEQ ID NO 1075, SEQ ID NO 1076, SEQ ID NO 1077, SEQ ID NO 1081, SEQ ID NO 1083, SEQ ID NO 1087, SEQ ID NO 1088, SEQ ID NO 1089, SEQ ID NO 1103, SEQ ID NO 1104, SEQ ID NO 1105, SEQ ID NO 1114, SEQ ID NO 1115, SEQ ID NO 1116, SEQ ID NO 1123, SEQ ID NO 1124, SEQ ID NO 1125, SEQ ID NO 1129, SEQ ID NO 1130, SEQ ID NO 1131, SEQ ID NO 1140, SEQ ID NO 1141, SEQ ID NO 1142, SEQ ID NO 1143, SEQ ID NO 1151, SEQ ID NO 1158, SEQ ID NO 1159, SEQ ID NO 1162, SEQ ID NO 1163, SEQ ID NO 1163, SEQ ID NO 1164, SEQ ID NO 1165, SEQ ID NO 1166, SEQ ID NO 1167, SEQ ID NO 1169, SEQ ID NO 1170, SEQ ID NO 1171, SEQ ID NO 1172, SEQ ID NO 1172, SEQ ID NO 1180, SEQ ID NO 1181, SEQ ID NO 1185, SEQ ID NO 1186, SEQ ID NO 1187, SEQ ID NO 1188, SEQ ID NO 1189, SEQ ID NO 1189, SEQ ID NO 1190, SEQ ID NO 1191, SEQ ID NO 1192, SEQ ID NO 1193, SEQ ID NO 1194, SEQ ID NO 1195, SEQ ID NO 1196, SEQ ID NO 1198, SEQ ID NO 1200, SEQ ID NO 1201, SEQ ID NO 1202, SEQ ID NO 1203, SEQ ID NO 1207, SEQ ID NO 1262, SEQ ID NO 1264, SEQ ID NO 1267, SEQ ID NO 1269, SEQ ID NO 1509, SEQ ID NO 1510, SEQ ID NO 1511, SEQ ID NO 1519, SEQ ID NO 1520, SEQ ID NO 1520, SEQ ID NO 1521, SEQ ID NO 1522, SEQ ID NO 1523, SEQ ID NO 1524, SEQ ID NO 1524, SEQ ID NO 1528, SEQ ID NO 1529, SEQ ID NO 1534, SEQ ID NO 1536, SEQ ID NO 1544, SEQ ID NO 1546, SEQ ID NO 1551, SEQ ID NO 1553, SEQ ID NO 1554, SEQ ID NO 1556, SEQ ID NO 1557, SEQ ID NO 1561, SEQ ID NO 1562, SEQ ID NO 1682, SEQ ID NO 1683, SEQ ID NO 1684, SEQ ID NO 1776, SEQ ID NO 1777, SEQ ID NO 1778, SEQ ID NO 2023, SEQ ID NO 2024, SEQ ID NO 2025, SEQ ID NO 2026, SEQ ID NO 2028, SEQ ID NO 2173, SEQ ID NO 2174, SEQ ID NO 2175, SEQ ID NO 2176, SEQ ID NO 2177, SEQ ID NO 2178, SEQ ID NO 2179, SEQ ID NO 2181, SEQ ID NO 2762, SEQ ID NO 2763, SEQ ID NO 2764, SEQ ID NO 2860, SEQ ID NO 2861, SEQ ID NO 2862, SEQ ID NO 2883, SEQ ID NO 2884 and SEQ ID NO 2885.

The Top 150 polynucleotide probe set contains a combination of polynucleotide probes characterized by polynucleotide probes chosen among SEQ ID NO 1 to SEQ ID NO 2938.

The Top 200 polynucleotide probe set contains a combination of polynucleotide probes characterized by polynucleotide probes chosen among SEQ ID NO 1 to SEQ ID NO 2938.

According to the invention, the multiplicities used can also be represented by a number of at least 300 polynucleotide probe sets, more particularly at least 400 polynucleotide probe sets, more particularly at least 500 polynucleotide probe sets, more particularly at least 600 polynucleotide probe sets, more particularly at least 700 polynucleotide probe sets, more particularly at least 800 polynucleotide probe sets, more particularly at least 900 polynucleotide probe sets, more particularly at least 1000 polynucleotide probe sets, more particularly at least 1100 polynucleotide probe sets, more particularly at least 1228 polynucleotide probe sets, more particularly at least 1400 polynucleotide probe sets, and more particularly 1640 polynucleotide probe sets.

All the above-mentioned multiplicities of polynucleotide probe sets contain polynucleotides probes chosen among the library of nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO 2938.

According to the invention, the 1228 polynucleotide probe sets are an advantageous multiplicity of probe sets defined to diagnose the benign versus malignant status of a breast tumor.

In another embodiment, the invention also relates to the use of a multiplicity of polynucleotide probe sets, wherein polynucleotide probe sets are chosen among at least 50 polynucleotide probe sets, particularly at least 100 polynucleotide probe sets, more particularly at least 150 polynucleotide probe sets, more particularly at least 200 polynucleotide probe sets, more particularly at least 1228 polynucleotide probe sets, and more particularly 1640 polynucleotide probe sets of the library of nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO 2938,

and wherein the sub-group of genes is constituted by the 259 genes of the group consisting in SEQ ID NO 5419 to SEQ ID NO 5677.

According to the invention, the benign versus malignant status of a breast tumor can be determined by the use of 2938 polynucleotide probes.

In an advantageous embodiment, the invention describes the use of a multiplicity of polynucleotide probe sets, wherein a variant of a given gene is chosen among the group of variants consisting in SEQ ID NO 4579 to SEQ ID NO 5418.

According to the invention, each gene can have:

-   -   no variant     -   at least one variant, as defined above.

In an advantageous embodiment, the invention discloses the use of a multiplicity of polynucleotide probe sets, each polynucleotide probe set containing at least one polynucleotide probe, each probe being able to specifically hybridize with at least one gene, and/or its variants when they exist, to determine the benign or malignant status of a breast tumor.

More particularly, the invention discloses the use of 2938 polynucleotides probes, assembled in polynucleotide probe sets, said polynucleotides probes being able to detect the variation of expression of at least one gene chosen among 259 genes, and/or its variants when present. According to the invention, the variation of expression of at least 839 variants and the variation of expression 259 genes can be detected by the use of the multiplicities of polynucleotide probe sets described above.

The invention also discloses a library of nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO 2938.

This library consists in all the polynucleotide probes that can be regrouped in 1640 representative probe sets of the invention. Then, the library consists in a group that contains 2938 polynucleotide probes.

The invention advantageously discloses a multiplicity of polynucleotide probes sets chosen among the nucleic acid sequences of the library described above, wherein the multiplicity of polynucleotide probe sets represents a combination of pool of polynucleotide probe sets able to specifically hybridize with 214 genes, and/or their variants when they exist, chosen among SEQ ID NO 5419 to SEQ ID NO 5677.

The group of polynucleotide probes represents a combination of 1228 polynucleotide probe sets. The group allows to detect the variation of expression of 214 genes and/or their variants when they exist.

The invention advantageously discloses a multiplicity of polynucleotide probe sets chosen among the nucleic acid sequences of the library according to claim 8, wherein the multiplicity of polynucleotide probe sets represents a combination of pool of polynucleotide probe sets able to specifically hybridize with 40 genes, and/or their variants when they exist, chosen among SEQ ID NO 5419 to SEQ ID NO 5677.

The group of polynucleotide probes represents a combination of 200 polynucleotide probe sets. The group allows to detect the variation of expression of 40 genes and/or their variants when they exist.

The invention more advantageously discloses a multiplicity of polynucleotide probe sets chosen among the nucleic acid sequences of the library according to claim 8, wherein the multiplicity of polynucleotide probe sets represents a combination of pool of polynucleotide probe sets able to specifically hybridize with 32 genes, and/or their variants when they exist, chosen among SEQ ID NO 5419 to SEQ ID NO 5677.

The group of polynucleotide probes represents a combination of 150 polynucleotide probe sets. The group allows to detect the variation of expression of 32 genes and/or their variants when they exist.

The invention more advantageously discloses multiplicity of polynucleotide probe sets chosen among the nucleic acid sequences of the library according to claim 8, wherein the multiplicity of polynucleotide probe sets represents a combination of pool of polynucleotide probe sets able to specifically hybridize with 19 genes, and/or their variants when they exist, chosen among SEQ ID NO 5419 to SEQ ID NO 5677.

According to the invention, the set of polynucleotide probe being able to specifically hybridize with 19 genes, and/or their variants when they exist, comprises the polynucleotide probes consisting in SEQ ID NO 120, SEQ ID NO 138, SEQ ID NO 140, SEQ ID NO 154, SEQ ID NO 155, SEQ ID NO 156, SEQ ID NO 157, SEQ ID NO 159, SEQ ID NO 166, SEQ ID NO 167, SEQ ID NO 168, SEQ ID NO 169, SEQ ID NO 171, SEQ ID NO 173, SEQ ID NO 174, SEQ ID NO 175, SEQ ID NO 176, SEQ ID NO 177, SEQ ID NO 312, SEQ ID NO 314, SEQ ID NO 315, SEQ ID NO 317, SEQ ID NO 324, SEQ ID NO 326, SEQ ID NO 327, SEQ ID NO 328, SEQ ID NO 329, SEQ ID NO 330, SEQ ID NO 331, SEQ ID NO 331, SEQ ID NO 332, SEQ ID NO 333, SEQ ID NO 335, SEQ ID NO 336, SEQ ID NO 337, SEQ ID NO 338, SEQ ID NO 339, SEQ ID NO 341, SEQ ID NO 345, SEQ ID NO 347, SEQ ID NO 349, SEQ ID NO 350, SEQ ID NO 351, SEQ ID NO 352, SEQ ID NO 353, SEQ ID NO 354, SEQ ID NO 355, SEQ ID NO 356, SEQ ID NO 360, SEQ ID NO 361, SEQ ID NO 363, SEQ ID NO 364, SEQ ID NO 364, SEQ ID NO 366, SEQ ID NO 367, SEQ ID NO 369, SEQ ID NO 369, SEQ ID NO 371, SEQ ID NO 376, SEQ ID NO 378, SEQ ID NO 379, SEQ ID NO 380, SEQ ID NO 381, SEQ ID NO 555, SEQ ID NO 556, SEQ ID NO 557, SEQ ID NO 558, SEQ ID NO 560, SEQ ID NO 561, SEQ ID NO 562, SEQ ID NO 566, SEQ ID NO 567, SEQ ID NO 788, SEQ ID NO 789, SEQ ID NO 790, SEQ ID NO 792, SEQ ID NO 793, SEQ ID NO 795, SEQ ID NO 800, SEQ ID NO 801, SEQ ID NO 802, SEQ ID NO 821, SEQ ID NO 822, SEQ ID NO 823, SEQ ID NO 969, SEQ ID NO 971, SEQ ID NO 972, SEQ ID NO 981, SEQ ID NO 1056, SEQ ID NO 1057, SEQ ID NO 1058, SEQ ID NO 1075, SEQ ID NO 1076, SEQ ID NO 1077, SEQ ID NO 1081, SEQ ID NO 1083, SEQ ID NO 1087, SEQ ID NO 1088, SEQ ID NO 1089, SEQ ID NO 1103, SEQ ID NO 1104, SEQ ID NO 1105, SEQ ID NO 1114, SEQ ID NO 1115, SEQ ID NO 1116, SEQ ID NO 1123, SEQ ID NO 1124, SEQ ID NO 1125, SEQ ID NO 1129, SEQ ID NO 1130, SEQ ID NO 1131, SEQ ID NO 1140, SEQ ID NO 1141, SEQ ID NO 1142, SEQ ID NO 1143, SEQ ID NO 1151, SEQ ID NO 1158, SEQ ID NO 1159, SEQ ID NO 1162, SEQ ID NO 1163, SEQ ID NO 1163, SEQ ID NO 1164, SEQ ID NO 1165, SEQ ID NO 1166, SEQ ID NO 1167, SEQ ID NO 1169, SEQ ID NO 1170, SEQ ID NO 1171, SEQ ID NO 1172, SEQ ID NO 1172, SEQ ID NO 1180, SEQ ID NO 1181, SEQ ID NO 1185, SEQ ID NO 1186, SEQ ID NO 1187, SEQ ID NO 1188, SEQ ID NO 1189, SEQ ID NO 1189, SEQ ID NO 1190, SEQ ID NO 1191, SEQ ID NO 1192, SEQ ID NO 1193, SEQ ID NO 1194, SEQ ID NO 1195, SEQ ID NO 1196, SEQ ID NO 1198, SEQ ID NO 1200, SEQ ID NO 1201, SEQ ID NO 1202, SEQ ID NO 1203, SEQ ID NO 1207, SEQ ID NO 1262, SEQ ID NO 1264, SEQ ID NO 1267, SEQ ID NO 1269, SEQ ID NO 1509, SEQ ID NO 1510, SEQ ID NO 1511, SEQ ID NO 1519, SEQ ID NO 1520, SEQ ID NO 1520, SEQ ID NO 1521, SEQ ID NO 1522, SEQ ID NO 1523, SEQ ID NO 1524, SEQ ID NO 1524, SEQ ID NO 1528, SEQ ID NO 1529, SEQ ID NO 1534, SEQ ID NO 1536, SEQ ID NO 1544, SEQ ID NO 1546, SEQ ID NO 1551, SEQ ID NO 1553, SEQ ID NO 1554, SEQ ID NO 1556, SEQ ID NO 1557, SEQ ID NO 1561, SEQ ID NO 1562, SEQ ID NO 1682, SEQ ID NO 1683, SEQ ID NO 1684, SEQ ID NO 1776, SEQ ID NO 1777, SEQ ID NO 1778, SEQ ID NO 2023, SEQ ID NO 2024, SEQ ID NO 2025, SEQ ID NO 2026, SEQ ID NO 2028, SEQ ID NO 2173, SEQ ID NO 2174, SEQ ID NO 2175, SEQ ID NO 2176, SEQ ID NO 2177, SEQ ID NO 2178, SEQ ID NO 2179, SEQ ID NO 2181, SEQ ID NO 2762, SEQ ID NO 2763, SEQ ID NO 2764, SEQ ID NO 2860, SEQ ID NO 2861, SEQ ID NO 2862, SEQ ID NO 2883, SEQ ID NO 2884 and SEQ ID NO 2885.

The group of polynucleotide probes represents a combination of 100 polynucleotide probe sets. The group allows to detect the variation of expression of 19 genes and/or their variants when they exist.

The invention advantageously discloses a multiplicity of polynucleotide probe sets chosen among the nucleic acid sequences of the library according to claim 8, wherein the multiplicity of polynucleotide probe sets represents a combination of pool of polynucleotide probe sets able to specifically hybridize with 12 genes, and/or their variants when they exist, chosen among SEQ ID NO 5419 to SEQ ID NO 5677.

According to the invention, the set of polynucleotide probe being able to specifically hybridize with 12 genes, and/or their variants when they exist, comprises the polynucleotide probes consisting in SEQ ID NO 138, SEQ ID NO 140, SEQ ID NO 157, SEQ ID NO 159, SEQ ID NO 167, SEQ ID NO 168, SEQ ID NO 169, SEQ ID NO 171, SEQ ID NO 173, SEQ ID NO 177, SEQ ID NO 312, SEQ ID NO 314, SEQ ID NO 315, SEQ ID NO 317, SEQ ID NO 324, SEQ ID NO 326, SEQ ID NO 327, SEQ ID NO 329, SEQ ID NO 330, SEQ ID NO 331 SEQ ID NO 333, SEQ ID NO 335, SEQ ID NO 336, SEQ ID NO 339, SEQ ID NO 341, SEQ ID NO 345, SEQ ID NO 347, SEQ ID NO 353, SEQ ID NO 360, SEQ ID NO 361, SEQ ID NO 364, SEQ ID NO 366, SEQ ID NO 367, SEQ ID NO 369, SEQ ID NO 790, SEQ ID NO 792, SEQ ID NO 793, SEQ ID NO 795, SEQ ID NO 969, SEQ ID NO 972, SEQ ID NO 981, SEQ ID NO 1081, SEQ ID NO 1083, SEQ ID NO 1129, SEQ ID NO 1140, SEQ ID NO 1141, SEQ ID NO 1151, SEQ ID NO 1158, SEQ ID NO 1159, SEQ ID NO 1162, SEQ ID NO 1165, SEQ ID NO 1166, SEQ ID NO 1167, SEQ ID NO 1169, SEQ ID NO 1170, SEQ ID NO 1171, SEQ ID NO 1185, SEQ ID NO 1186, SEQ ID NO 1194, SEQ ID NO 1198, SEQ ID NO 1200, SEQ ID NO 1203, SEQ ID NO 1262, SEQ ID NO 1264, SEQ ID NO 1267, SEQ ID NO 1269, SEQ ID NO 1520, SEQ ID NO 1522, SEQ ID NO 1523, SEQ ID NO 1524, SEQ ID NO 1534, SEQ ID NO 1536, SEQ ID NO 1544, SEQ ID NO 1546, SEQ ID NO 1551, SEQ ID NO 1553, SEQ ID NO 1554, SEQ ID NO 1556, SEQ ID NO 1557, SEQ ID NO 2026, SEQ ID NO 2028, SEQ ID NO 2179 and SEQ ID NO 2181.

The group of polynucleotide probes represents a combination of 50 polynucleotide probe sets. The group allows to detect the variation of expression of 12 genes and/or their variants when they exist.

The invention also discloses a multiplicity of 50 polynucleotide probe sets chosen among 1640 polynucleotide probe sets as defined above.

Also, the invention relates to a multiplicity of at least 50 polynucleotide probe sets chosen among 1640 polynucleotide probe sets, the nucleic acid sequences of the polynucleotide probes contained in said 50 polynucleotide probe sets being the following nucleic acid sequences: SEQ ID NOs 136; 137; 138; 157; 158; 159; 167; 168; 169; 171; 172; 173; 177; 312; 313; 313; 314; 315; 316; 317; 324; 325; 326; 327; 328; 329; 330; 331; 333; 334; 335; 336; 339; 340; 341; 345; 346; 347; 348; 353; 360; 361; 364; 365; 366; 367; 368; 369; 370; 374; 375; 790; 791; 792; 793; 794; 795; 969; 972; 981; 1081; 1082; 1083; 1129; 1140; 1141; 1158; 1159; 1160; 1161; 1162; 1165; 1166; 1167; 1168; 1169; 1170; 1171; 1185; 1186; 1194; 1198; 1199; 1200; 1203; 1262; 1263; 1264; 1267; 1268; 1269; 1519; 1520; 1521; 1522; 1523; 1524; 1534; 1535; 1536; 1544; 1545; 1546; 1551; 1552; 1553; 1554; 1555; 1556; 1557; 2026; 2027; 2028; 2179; 2180 and 2181,

each polynucleotide probe set containing from 1 to 4 of said polynucleotide probes,

preferably, wherein SEQ ID NOs 167; 168; 177; 312; 313; 327; 328; 329; 331; 364; 365; 366; 368; 370; 1185; 1186; 1194; 1523; 1524; 1551; 1552 and 1553 are present twice, SEQ ID NO 316 is present in three copies and SEQ ID NO 315 is present in 5 copies.

In one preferred embodiment, the invention also discloses a multiplicity of 100 polynucleotide probe sets chosen among 1640 polynucleotide probe sets as defined above.

Also, the invention relates to a multiplicity of at least 100 polynucleotide probe sets as above defined, the nucleic acid sequences of the polynucleotides probes contained in said 100 polynucleotide probe sets being the following nucleic acid sequences: SEQ ID NO 120; 136; 137; 138; 154; 155; 156; 157; 158; 159; 167; 168; 169; 171; 172; 173; 174; 175; 176; 177; 312; 313; 314; 315; 316; 316; 317; 324; 325; 326; 327; 328; 329; 330; 331; 332; 333; 334; 335; 336; 337; 338; 339; 340; 341; 345; 346; 347; 348; 349; 350; 351; 352; 353; 354; 355; 356; 360; 361; 363; 364; 365; 366; 367; 368; 369; 370; 371; 374; 375; 376; 378; 379; 380; 381; 555; 556; 557; 558; 560; 561; 562; 566; 567; 788; 789; 790; 791; 792; 793; 794; 795; 800; 801; 802; 821; 822; 823; 969; 971; 972; 981; 1056; 1057; 1058; 1075; 1076; 1077; 1081; 1082; 1083; 1087; 1088; 1089; 1103; 1104; 1105; 1114; 1115; 1116; 1123; 1124; 1125; 1129; 1130; 1131; 1140; 1141; 1158; 1159; 1160; 1161; 1162; 1163; 1164; 1165; 1166; 1167; 1168; 1169; 1170; 1171; 1172; 1180; 1181; 1185; 1186; 1187; 1188; 1189; 1190; 1191; 1192; 1193; 1194; 1195; 1196; 1198; 1199; 1200; 1201; 1202; 1203; 1207; 1262; 1263; 1264; 1267; 1268; 1269; 1509; 1510; 1511; 1519; 1520; 1521; 1522; 1523; 1524; 1528; 1529; 1534; 1535; 1536; 1544; 1545; 1546; 1551; 1552; 1553; 1554; 1555; 1556; 1557; 1561; 1562; 1682; 1683; 1684; 1776; 1777; 1778; 2023; 2024; 2025; 2026; 2027; 2028; 2173; 2174; 2175; 2176; 2177; 2178; 2179; 2180; 2181; 2762; 2763; 2764; 2860; 2861; 2862; 2883; 2884 and 2885,

each polynucleotide probe set containing from 1 to 4 of said polynucleotide probes,

preferably, wherein SEQ ID NOs 167; 168; 177; 312; 313; 316; 317; 327; 329; 330; 353; 361; 364; 365; 366; 367; 368; 369; 370; 821; 822; 823; 1129; 1164; 1185; 1186; 1187; 1188; 1189; 1203; 1523; 1551; 1552 and 1553 are present twice, SEQ ID NOs 328; 331; 1162; 1194; 1519; 1520; 1521 and 1524 are present in three copies and SEQ ID NO 315 is present in 6 copies.

In another preferred embodiment, the invention also discloses a multiplicity of 150 polynucleotide probe sets chosen among 1640 polynucleotide probe sets as defined above.

In other word, the invention relates to a multiplicity of at least 150 polynucleotide probe sets previously defined, the nucleic acid sequences of the polynucleotides probes contained in said 150 polynucleotide probe sets being the following nucleic acid sequences: SEQ ID NOs 4; 5; 6; 120; 136; 137; 138; 154; 155; 156; 157; 158; 159; 167; 168; 169; 171; 172; 173; 174; 175; 176; 177; 197; 248; 254; 255; 305; 306; 307; 312; 313; 314; 315; 316; 317; 324; 325; 326; 327; 328; 329; 330; 331; 332; 333; 334; 335; 336; 337; 338; 339; 340; 341; 345; 346; 347; 348; 349; 350; 351; 352; 353; 354; 355; 356; 360; 361; 362; 363; 364; 365; 366; 367; 367; 368; 369; 370; 371; 374; 375; 376; 377; 378; 379; 380; 381; 513; 514; 515; 552; 553; 554; 555; 556; 557; 558; 559; 560; 561; 562; 566; 567; 783; 784; 785; 788; 789; 790; 791; 792; 793; 794; 795; 796; 797; 798; 799; 800; 801; 802; 803; 804; 805; 806; 807; 808; 812; 813; 814; 818; 821; 822; 823; 968; 969; 970; 971; 972; 981; 1056; 1057; 1058; 1061; 1062; 1063; 1064; 1065; 1066; 1067; 1068; 1069; 1070; 1071; 1075; 1076; 1077; 1080; 1081; 1082; 1083; 1087; 1088; 1089; 1103; 1104; 1105; 1114; 1115; 1116; 1123; 1124; 1125; 1129; 1130; 1131; 1139; 1140; 1141; 1158; 1159; 1160; 1161; 1162; 1163; 1164; 1165; 1166; 1167; 1168; 1169; 1170; 1171; 1172; 1174; 1175; 1176; 1180; 1181; 1185; 1186; 1187; 1188; 1189; 1190; 1191; 1192; 1193; 1194; 1195; 1196; 1197; 1198; 1199; 1200; 1201; 1202; 1203; 1204; 1205; 1206; 1207; 1262; 1263; 1264; 1267; 1268; 1269; 1284; 1285; 1315; 1469; 1470; 1471; 1509; 1510; 1511; 1515; 1516; 1517; 1519; 1520; 1521; 1522; 1523; 1524; 1528; 1529; 1534; 1535; 1536; 1537; 1538; 1539; 1544; 1545; 1546; 1550; 1551; 1552; 1553; 1554; 1555; 1556; 1557; 1558; 1559; 1560; 1561; 1562; 1580; 1581; 1582; 1671; 1682; 1683; 1684; 1685; 1686; 1690; 1691; 1692; 1776; 1777; 1778; 1788; 1789; 1790; 1890; 1891; 1892; 1952; 1953; 1954; 1963; 2023; 2024; 2025; 2026; 2027; 2028; 2065; 2067; 2088; 2089; 2090; 2091; 2173; 2174; 2175; 2176; 2177; 2178; 2179; 2180; 2181; 2196; 2201; 2229; 2230; 2231; 2536; 2537; 2538; 2576; 2577; 2578; 2599; 2600; 2762; 2763; 2764; 2774; 2775; 2776; 2860; 2861; 2862; 2883; 2884 and 2885,

each polynucleotide probe set containing from 1 to 4 of said polynucleotide probes,

preferably, wherein SEQ ID NOs 167; 168; 177; 312; 313; 317; 327; 329; 330; 353; 361; 363; 364; 365; 366; 369; 370; 371; 558; 567; 796; 797; 801; 806; 807; 808; 813; 814; 821; 822; 823; 969; 1056; 1057; 1058; 1129; 1141; 1163; 1164; 1185; 1186; 1187; 1188; 1189; 1199; 1203; 1469; 1470; 1471; 1523; 1551; 1552 and 1553 are present twice, SEQ ID NOs 316; 328; 331; 368; 788; 1194; 1519; 1520; 1521; 1524 are present in three copies, SEQ ID NO 1162 is present in 4 copies and SEQ ID NO 315 is present in 6 copies.

Another preferred embodiment of the invention relates to a multiplicity of 200 polynucleotide probe sets chosen among 1640 polynucleotide probe sets as defined above.

Indeed, a preferred embodiment of the invention discloses a multiplicity of at least 200 polynucleotide probe sets defined above, the nucleic acid sequences of the polynucleotide probes contained in said 200 polynucleotide probe sets being the following nucleic acid sequences: SEQ ID NOs 4; 5; 6; 120; 121; 122; 123; 130; 131; 132; 136; 137; 138; 154; 155; 156; 157; 158; 159; 167; 168; 169; 171; 172; 173; 174; 175; 176; 177; 195; 196; 197; 198; 199; 200; 248; 254; 255; 305; 306; 307; 312; 313; 314; 315; 316; 317; 324; 325; 326; 327; 328; 329; 330; 331; 332; 333; 334; 335; 336; 337; 338; 339; 340; 341; 345; 346; 347; 348; 349; 350; 351; 352; 353; 354; 355; 356; 360; 361; 362; 363; 364; 365; 366; 367; 368; 369; 370; 371; 374; 375; 376; 377; 378; 379; 380; 381; 513; 514; 515; 552; 553; 554; 555; 556; 557; 558; 559; 560; 561; 562; 563; 564; 565; 566; 567; 783; 784; 785; 788; 789; 790; 791; 792; 793; 794; 795; 796; 797; 798; 799; 800; 801; 802; 803; 804; 805; 806; 807; 808; 809; 810; 811; 812; 813; 814; 815; 816; 817; 818; 821; 822; 823; 824; 825; 826; 840; 841; 845; 846; 847; 868; 968; 969; 970; 971; 972; 973; 974; 975; 976; 977; 981; 1056; 1057; 1058; 1059; 1060; 1061; 1062; 1063; 1064; 1065; 1066; 1067; 1068; 1069; 1070; 1071; 1075; 1076; 1077; 1080; 1081; 1082; 1083; 1084; 1085; 1086; 1087; 1088; 1089; 1094; 1095; 1096; 1103; 1104; 1105; 1110; 1111; 1112; 1114; 1115; 1116; 1123; 1124; 1125; 1126; 1127; 1128; 1129; 1130; 1131; 1139; 1140; 1141; 1158; 1159; 1160; 1161; 1162; 1163; 1164; 1165; 1166; 1167; 1168; 1169; 1170; 1171; 1172; 1174; 1175; 1176; 1180; 1181; 1185; 1186; 1187; 1188; 1189; 1190; 1191; 1192; 1193; 1194; 1195; 1196; 1197; 1198; 1199; 1200; 1201; 1202; 1203; 1204; 1205; 1206; 1207; 1229; 1230; 1242; 1243; 1244; 1245; 1250; 1251; 1252; 1262; 1263; 1264; 1265; 1266; 1267; 1268; 1269; 1270; 1271; 1272; 1284; 1285; 1315; 1335; 1407; 1408; 1469; 1470; 1471; 1509; 1510; 1511; 1512; 1513; 1514; 1515; 1516; 1517; 1519; 1520; 1521; 1522; 1523; 1524; 1528; 1529; 1534; 1535; 1536; 1537; 1538; 1539; 1544; 1545; 1546; 1550; 1551; 1552; 1553; 1554; 1555; 1556; 1557; 1558; 1559; 1560; 1561; 1562; 1563; 1564; 1580; 1581; 1582; 1586; 1587; 1588; 1671; 1682; 1683; 1684; 1685; 1686; 1687; 1688; 1689; 1690; 1691; 1692; 1743; 1744; 1745; 1776; 1777; 1778; 1788; 1789; 1790; 1890; 1891; 1892; 1896; 1897; 1898; 1952; 1953; 1954; 1963; 1974; 2023; 2024; 2025; 2026; 2027; 2028; 2061; 2062; 2063; 2065; 2067; 2068; 2072; 2083; 2084; 2085; 2088; 2089; 2090; 2091; 2092; 2173; 2174; 2175; 2176; 2177; 2178; 2179; 2180; 2181; 2196; 2201; 2229; 2230; 2231; 2381; 2382; 2383; 2536; 2537; 2538; 2576; 2577; 2578; 2599; 2600; 2601; 2602; 2603; 2762; 2763; 2764; 2774; 2775; 2776; 2778; 2779; 2783; 2794; 2860; 2861; 2862; 2883; 2884 and 2885,

each polynucleotide probe set containing from 1 to 4 of said polynucleotide probes,

preferably, wherein SEQ ID NOs 167; 168; 177; 312; 313; 317; 327; 329; 330; 353; 361; 363; 364; 365; 366; 367; 369; 370; 371; 558; 567; 796; 797; 801; 806; 807; 808; 813; 814; 821; 822; 823; 845; 968; 970; 972; 1056; 1057; 1058; 1085; 1114; 1115; 1116; 1123; 1124; 1125; 1129; 1141; 1163; 1164; 1185; 1186; 1187; 1188; 1189; 1199; 1203; 1523; 1551; 1552; 1553; 1557; 1586; 1587; 1588; 1952; 1953; 1954; 2088; 2090; 2091; 2762; 2763 and 2764 are present twice, SEQ ID NOs 316; 328; 331; 368; 788; 1284; 1285; 1469; 1470; 1471; 1519; 1520; 1521; 1524; 2065; 2067 and 2089 are present in three copies, SEQ ID NO 1194 is present in 4 copies and SEQ ID NOs 315 and 1162 are present in 6 copies.

Another particular embodiment of the invention relates to a multiplicity of 1228 polynucleotide probe sets chosen among 1640 polynucleotide probe sets as defined above.

The invention, in a particular embodiment, relates to a multiplicity of at least 1228 polynucleotide probe sets as defined above, containing 3985 polynucleotide probes, the nucleic acid sequences of the polynucleotide probes contained in said 1228 polynucleotide probe sets being represented in the first 1228 lines of the Table 7.

The invention discloses, in another preferred embodiment, a multiplicity 1640 polynucleotide probe sets as defined above.

The invention related to a multiplicity of 1640 polynucleotide probe sets as previously defined, the nucleic acid sequences of the polynucleotide probes contained in said 1640 polynucleotide probe sets being represented in Table 7.

The invention also discloses a micro-array comprising or consisting in a multiplicity of polynucleotide probe sets as defined above.

Thus, the invention discloses a micro-array comprising the library of nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO 2938, or a multiplicity of polynucleotide probe sets:

-   -   corresponding to a multiplicity of 1228 polynucleotide probe         sets comprising nucleic acid sequences chosen among the group         consisting in SEQ ID NO 1 to SEQ ID NO 2938, or     -   corresponding to a multiplicity of 200 polynucleotide probe sets         comprising nucleic acid sequences consisting in SEQ ID NO 1 to         SEQ ID NO 2938, or     -   corresponding to a multiplicity of 150 polynucleotide probe sets         comprising nucleic acid sequences consisting in SEQ ID NO 1 to         SEQ ID NO 2938, or     -   corresponding to a multiplicity of 100 polynucleotide probe sets         comprising nucleic acid sequences consisting in SEQ ID NO 1 to         SEQ ID NO 2938, and in particular consisting in SEQ ID NO 120,         SEQ ID NO 138, SEQ ID NO 140, SEQ ID NO 154, SEQ ID NO 155, SEQ         ID NO 156, SEQ ID NO 157, SEQ ID NO 159, SEQ ID NO 166, SEQ ID         NO 167, SEQ ID NO 168, SEQ ID NO 169, SEQ ID NO 171, SEQ ID NO         173, SEQ ID NO 174, SEQ ID NO 175, SEQ ID NO 176, SEQ ID NO 177,         SEQ ID NO 312, SEQ ID NO 314, SEQ ID NO 315, SEQ ID NO 317, SEQ         ID NO 324, SEQ ID NO 326, SEQ ID NO 327, SEQ ID NO 328, SEQ ID         NO 329, SEQ ID NO 330, SEQ ID NO 331, SEQ ID NO 331, SEQ ID NO         332, SEQ ID NO 333, SEQ ID NO 335, SEQ ID NO 336, SEQ ID NO 337,         SEQ ID NO 338, SEQ ID NO 339, SEQ ID NO 341, SEQ ID NO 345, SEQ         ID NO 347, SEQ ID NO 349, SEQ ID NO 350, SEQ ID NO 351, SEQ ID         NO 352, SEQ ID NO 353, SEQ ID NO 354, SEQ ID NO 355, SEQ ID NO         356, SEQ ID NO 360, SEQ ID NO 361, SEQ ID NO 363, SEQ ID NO 364,         SEQ ID NO 364, SEQ ID NO 366, SEQ ID NO 367, SEQ ID NO 369, SEQ         ID NO 369, SEQ ID NO 371, SEQ ID NO 376, SEQ ID NO 378, SEQ ID         NO 379, SEQ ID NO 380, SEQ ID NO 381, SEQ ID NO 555, SEQ ID NO         556, SEQ ID NO 557, SEQ ID NO 558, SEQ ID NO 560, SEQ ID NO 561,         SEQ ID NO 562, SEQ ID NO 566, SEQ ID NO 567, SEQ ID NO 788, SEQ         ID NO 789, SEQ ID NO 790, SEQ ID NO 792, SEQ ID NO 793, SEQ ID         NO 795, SEQ ID NO 800, SEQ ID NO 801, SEQ ID NO 802, SEQ ID NO         821, SEQ ID NO 822, SEQ ID NO 823, SEQ ID NO 969, SEQ ID NO 971,         SEQ ID NO 972, SEQ ID NO 981, SEQ ID NO 1056, SEQ ID NO 1057,         SEQ ID NO 1058, SEQ ID NO 1075, SEQ ID NO 1076, SEQ ID NO 1077,         SEQ ID NO 1081, SEQ ID NO 1083, SEQ ID NO 1087, SEQ ID NO 1088,         SEQ ID NO 1089, SEQ ID NO 1103, SEQ ID NO 1104, SEQ ID NO 1105,         SEQ ID NO 1114, SEQ ID NO 1115, SEQ ID NO 1116, SEQ ID NO 1123,         SEQ ID NO 1124, SEQ ID NO 1125, SEQ ID NO 1129, SEQ ID NO 1130,         SEQ ID NO 1131, SEQ ID NO 1140, SEQ ID NO 1141, SEQ ID NO 1142,         SEQ ID NO 1143, SEQ ID NO 1151, SEQ ID NO 1158, SEQ ID NO 1159,         SEQ ID NO 1162, SEQ ID NO 1163, SEQ ID NO 1163, SEQ ID NO 1164,         SEQ ID NO 1165, SEQ ID NO 1166, SEQ ID NO 1167, SEQ ID NO 1169,         SEQ ID NO 1170, SEQ ID NO 1171, SEQ ID NO 1172, SEQ ID NO 1172,         SEQ ID NO 1180, SEQ ID NO 1181, SEQ ID NO 1185, SEQ ID NO 1186,         SEQ ID NO 1187, SEQ ID NO 1188, SEQ ID NO 1189, SEQ ID NO 1189,         SEQ ID NO 1190, SEQ ID NO 1191, SEQ ID NO 1192, SEQ ID NO 1193,         SEQ ID NO 1194, SEQ ID NO 1195, SEQ ID NO 1196, SEQ ID NO 1198,         SEQ ID NO 1200, SEQ ID NO 1201, SEQ ID NO 1202, SEQ ID NO 1203,         SEQ ID NO 1207, SEQ ID NO 1262, SEQ ID NO 1264, SEQ ID NO 1267,         SEQ ID NO 1269, SEQ ID NO 1509, SEQ ID NO 1510, SEQ ID NO 1511,         SEQ ID NO 1519, SEQ ID NO 1520, SEQ ID NO 1520, SEQ ID NO 1521,         SEQ ID NO 1522, SEQ ID NO 1523, SEQ ID NO 1524, SEQ ID NO 1524,         SEQ ID NO 1528, SEQ ID NO 1529, SEQ ID NO 1534, SEQ ID NO 1536,         SEQ ID NO 1544, SEQ ID NO 1546, SEQ ID NO 1551, SEQ ID NO 1553,         SEQ ID NO 1554, SEQ ID NO 1556, SEQ ID NO 1557, SEQ ID NO 1561,         SEQ ID NO 1562, SEQ ID NO 1682, SEQ ID NO 1683, SEQ ID NO 1684,         SEQ ID NO 1776, SEQ ID NO 1777, SEQ ID NO 1778, SEQ ID NO 2023,         SEQ ID NO 2024, SEQ ID NO 2025, SEQ ID NO 2026, SEQ ID NO 2028,         SEQ ID NO 2173, SEQ ID NO 2174, SEQ ID NO 2175, SEQ ID NO 2176,         SEQ ID NO 2177, SEQ ID NO 2178, SEQ ID NO 2179, SEQ ID NO 2181,         SEQ ID NO 2762, SEQ ID NO 2763, SEQ ID NO 2764, SEQ ID NO 2860,         SEQ ID NO 2861, SEQ ID NO 2862, SEQ ID NO 2883, SEQ ID NO 2884         and SEQ ID NO 2885, or     -   corresponding to a multiplicity of 50 polynucleotide probe sets         comprising nucleic acid sequences consisting in SEQ ID NO 1 to         SEQ ID NO 2938, and in particular consisting in SEQ ID NO 138,         SEQ ID NO 140, SEQ ID NO 157, SEQ ID NO 159, SEQ ID NO 167, SEQ         ID NO 168, SEQ ID NO 169, SEQ ID NO 171, SEQ ID NO 173, SEQ ID         NO 177, SEQ ID NO 312, SEQ ID NO 314, SEQ ID NO 315, SEQ ID NO         317, SEQ ID NO 324, SEQ ID NO 326, SEQ ID NO 327, SEQ ID NO 329,         SEQ ID NO 330, SEQ ID NO 331 SEQ ID NO 333, SEQ ID NO 335, SEQ         ID NO 336, SEQ ID NO 339, SEQ ID NO 341, SEQ ID NO 345, SEQ ID         NO 347, SEQ ID NO 353, SEQ ID NO 360, SEQ ID NO 361, SEQ ID NO         364, SEQ ID NO 366, SEQ ID NO 367, SEQ ID NO 369, SEQ ID NO 790,         SEQ ID NO 792, SEQ ID NO 793, SEQ ID NO 795, SEQ ID NO 969, SEQ         ID NO 972, SEQ ID NO 981, SEQ ID NO 1081, SEQ ID NO 1083, SEQ ID         NO 1129, SEQ ID NO 1140, SEQ ID NO 1141, SEQ ID NO 1151, SEQ ID         NO 1158, SEQ ID NO 1159, SEQ ID NO 1162, SEQ ID NO 1165, SEQ ID         NO 1166, SEQ ID NO 1167, SEQ ID NO 1169, SEQ ID NO 1170, SEQ ID         NO 1171, SEQ ID NO 1185, SEQ ID NO 1186, SEQ ID NO 1194, SEQ ID         NO 1198, SEQ ID NO 1200, SEQ ID NO 1203, SEQ ID NO 1262, SEQ ID         NO 1264, SEQ ID NO 1267, SEQ ID NO 1269, SEQ ID NO 1520, SEQ ID         NO 1522, SEQ ID NO 1523, SEQ ID NO 1524, SEQ ID NO 1534, SEQ ID         NO 1536, SEQ ID NO 1544, SEQ ID NO 1546, SEQ ID NO 1551, SEQ ID         NO 1553, SEQ ID NO 1554, SEQ ID NO 1556, SEQ ID NO 1557, SEQ ID         NO 2026, SEQ ID NO 2028, SEQ ID NO 2179 and SEQ ID NO 2181.

The microarray refers to nucleic acid molecule covalently attached to an inert chemical surface, such as coated glass slides or gene chips, and to which a mobile DNA target is hybridized. All the commonly used surfaces can also serve as a support.

The invention discloses a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject, by determining the variation of the expression of a gene, and/or at least one of its variants when present, of a sub-group comprising at least 12 genes among the genes of the group consisting in SEQ ID NO 5419 to SEQ ID NO 5677, comprising:

-   -   a) contacting nucleic acid molecules from said biological sample         a multiplicity of polynucleotide probe sets, said multiplicity         of polynucleotide probe sets consisting in a combination of         pools of polynucleotide probe sets, each polynucleotide probe         set containing at least one polynucleotide probe chosen among a         library of nucleic acid sequences, each nucleic acid sequence         specifically hybridizing with a gene, and/or at least one of its         variants when present, said gene being chosen among the group of         genes consisting in SEQ ID NO 5419 to SEQ ID NO 5677,     -   each given gene, when it presents no variant, comprising at         least one target region, the nucleic acid sequence of which is         chosen among SEQ ID NO 2939 to SEQ ID NO 4578, said target         region characterizing said gene,     -   each given gene, when it presents at least one variant,         comprising at least two target regions such that:         -   at least one of the respective nucleic acid sequences of             said target region chosen among SEQ ID NO 2939 to SEQ ID NO             4578 is present in a given variant of said gene,         -   at least one of the respective nucleic acid sequences of             said target region chosen among SEQ ID NO 2939 to SEQ ID NO             4578 is either absent in a given variant or is present in a             configuration that differs from the one of said gene,     -   said two target regions characterizing said gene,         -   each variant of a given gene presenting at least one target             region, said target region being such that its respective             nucleic acid sequence is chosen among SEQ ID NO 2939 to SEQ             ID NO 4578,         -   each variant is characterized by:             -   either the combination of the presence of at least one                 target region also present in the gene, the respective                 nucleic acid sequence of which being chosen among SEQ ID                 NO 2939 to SEQ ID NO 4578, and the absence of at least                 one target region present in the gene the respective                 nucleic acid sequence of which being chosen among SEQ ID                 NO 2939 to SEQ ID NO 4578,             -   or the presence of a target region, the respective                 nucleic acid sequence of which being chosen among SEQ ID                 NO 2939 to SEQ ID NO 4578, said target region presenting                 a configuration that does not naturally exist in the                 gene,         -   each polynucleotide probe of a polynucleotide probe set             hybridizes with a specific nucleic acid sequence contained             in a given target region of the target regions which             characterize a given gene, and/or at least one of its             variants when present,         -   each given gene, and its variants when present, is             specifically recognized by at least a given polynucleotide             probe set,         -   each polynucleotide probe of a given pool of polynucleotide             probe set being such that it hybridizes with a given gene,             and/or at least one of its variants when present, and cannot             hybridize with any other gene different from said given             gene, and cannot hybridize with any other variants of a gene             different from said given gene,     -   b) determining a profile of expression variants of said genes         from the detection of the nucleic acid complexes formed in the         previous step,     -   c) comparing said profile with a reference gene expression         variant profile of a control subject,     -   d) concluding, from the previous comparison, the benign or         malignant state of the breast cancer in the subject.

Also, the invention relates to a method for the determination, preferably in vitro and/or ex vivo, of the benign or malignant state of a breast tumor in a biological sample from a subject, by determining the variation of the expression of

-   -   at least 12 determined genes belonging to a group of determined         genes represented by the nucleotidic sequences SEQ ID NO: 5419         to SEQ ID NO: 5693 and     -   at least one variant of said genes at least 12 determined genes,         when they exist,     -   said 12 determined genes being represented by the following         nucleotidic sequences:     -   SEQ ID NOs 5421; 5423; 5432; 5434; 5486; 5491; 5525; 5552; 5599;         5652; 5654 and 5683,

comprising:

-   -   (1) contacting nucleic acid molecules from said biological         sample to a multiplicity of polynucleotide probe sets, said         multiplicity of polynucleotide probe sets consisting in a         combination of pools of polynucleotide probe sets, to allow the         formation of a nucleic acid complexe,     -   each polynucleotide probe set containing at least one         polynucleotide probe chosen among a library of nucleic acid         sequences, said library compring or consisting of at least one         copy each of the nucleic acids consisting of SEQ ID NO 1 to SEQ         ID NO 2938,     -   said polynucleotide probes being such that the nucleic acid         sequence of each polynucleotide probe specifically hybridizes         with the nucleotidic sequence of one target region of one gene,         and/or of at least one of its variants when present,

wherein

-   -   a) each given gene,         -   a. when it presents no variant, comprises at least one             target region, said target region characterizing said gene,         -   b. when it presents one variant, comprises at least one             target region, said target region characterizing said gene             and its variant, and said variant being characterized by the             fact that its nucleic acid sequence is shorter than the             nucleic acid sequence of said gene,         -   c. when it presents at least two variants, comprises at             least two target regions, said two target regions             characterizing said gene, such that:             -   iii. at least one of the respective polynucleotidic                 sequences of said target region is present in a given                 variant of said gene, and             -   iv. at least one of the respective polynucleotidic                 sequences of said target region is either                 -   absent in a given variant, or                 -   present in a given variant in a configuration that                     differs from the one of said gene,                 -   said variant being characterized by the fact that                     its nucleic acid sequence is shorter than the                     nucleic acid sequence of said gene,     -   b) each variant of a given gene presents at least one target         region, and         -   if said variant is the unique variant of a gene, said             variant has the same target than said gene, and         -   if said variant is one of the variants of a gene that has at             least two variants, each variant of said gene is             characterized by either:             -   a. the combination of the presence of at least one                 target region also present in the gene, and the absence                 of at least one target region present in the gene, or             -   b. the combination of the presence of at least one                 target region also present in the gene, and the presence                 of a target region, said target region presenting a                 configuration that does not naturally exist in the gene,     -   c) the nucleotidic sequence of each given gene, and its variants         when present, is specifically recognized by the nucleic acid         sequences of polynucleotide probes contained in at least one         given polynucleotide probe set,     -   d) the nucleic acid sequence of each polynucleotide probe of a         polynucleotide probe set hybridizes with a specific         polynucleotidic sequence contained in a given target region of         the target regions which characterize a given gene, and/or at         least one of its variants when present,     -   e) the nucleic acid sequence of each polynucleotide probe of a         given pool of polynucleotide probe set being such that         -   a. it hybridizes with the nucleotidic sequence of a given             gene, and/or of at least one of its variants when present,             and         -   b. cannot hybridize with             -   i. the nucleotidic sequence of any other gene different                 from said given gene, and             -   ii. the nucleotidic sequence of any other variants of a                 gene different from said given gene,     -   (2) determining a profile of expression of said genes and of         variants of said genes from the detection of the nucleic acid         complexes formed in the previous step,     -   (3) comparing said profile with a reference expression profile         of a control benign breast tumor, and/or a reference expression         profile of a control malignant tumor, and     -   (4) concluding, from the previous comparison, that:         -   if said profile of expression is similar to the reference             expression profile of a control benign breast tumor, then             the breast cancer is benign, and         -   if said profile of expression is similar to the reference             expression profile of a control malignant breast tumor, then             the breast cancer is malignant,         -   with the proviso that said gene, and its variants when             present, is not KRT17, LOC440421, KRT6C and KRT6A, said             genes being respectively represented by SEQ ID NO 5431;             5689; 5651 and 5682.

The invention also describes a method that allows the determination of the status, benign or malignant, of a breast tumor.

In the method of the invention, a biological sample corresponding to a breast tumor is used as a source of nucleic acid molecule. Said biological sample refers to a sample obtained from an organism or from components (e.g., cells) of an organism. The sample may be one of any biological tissue. Frequently the sample could be a “clinical sample” which is a sample derived from a patient. Such samples include, but are not limited to, FNA sample, CNB sample, ductal lavage and blood sample. Biological samples may also include sections of tissues such as frozen sections taken for histological purposes.

The subject from which biological sample is provided is commonly a woman, afflicted, or suspected to be afflicted by a breast tumor. The subject can also be a man, with, or suspected to have, a breast cancer. By extension, all the mammals can be diagnosed by the method provides by the invention, with the proviso that they could develop a breast tumor.

The extraction of the nucleic acid molecules of the samples is managed by a routine protocol used in the art. Advantageously, nucleic acid molecules extracted from the biological sample are RNA.

Then, the method of the invention consists in contacting nucleic acid molecules extracted from the biological sample of a subject, with a multiplicity of polynucleotide probe sets. Each polynucleotide probe set contains at least one polynucleotide probe.

The contact between the polynucleotide probe set, and more particularly the polynucleotide probes contained in each polynucleotide probe set, allows to form a nucleic acid complex between the nucleic acid molecule corresponding to a gene, and/or its variants when they exist, and a polynucleotide probe.

Preferably, before contacting the polynucleotide probes with the nucleic acid molecules, nucleic acid molecules are labeled with any know labeling agents (radioisotopes, enzymes, fluorescent molecule . . . ). The hybridization is made according a standard procedure, by modulating if necessary saline concentration and temperature. The protocol used for hybridization is well known by the skilled man in the art.

The presence and amount of the formed nucleic acid complex is detected, by the detection of hybridized nucleic acid molecules which have been labeled with labeling agent, with a specific detection method fitting to the used labeled agent.

According to the invention, each probe set that have hybridized with labeled nucleic acid molecules allows to attribute a value of hybridization. The given value is dependant of the labeling agent.

The compilation of all the values of hybridization allows to establish a profile that corresponds to the specific feature of the tumor assayed. This result is considered as a hallmark of the tumor assayed.

The tumor profile is compared to a reference profile, in particular profile of tumors deriving from biological sample of non afflicted by breast cancer subjects, or derived from biological sample of a subject afflicted by a benign or a malignant breast tumor. Alternatively, the tumor profile assayed can be compared with tumor profile of patients afflicted by benign breast tumor or malignant breast tumor. Typically, the comparison is made by using software commonly used in this type of comparison, and well known and described in the art.

From the comparison between tumor profile and reference profile, it is possible to determine if the breast tumor derived from the biological sample of a patient is a benign tumor or a malignant tumor.

In an advantageous embodiment, the invention discloses a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject, wherein the determination of the variation of the expression of a gene, and/or at least one of its variants when present, of a sub-group comprising at least 12 genes among the genes of the group consisting in SEQ ID NO 5419 to SEQ ID NO 5677, comprises:

-   -   a) contacting nucleic acid molecules from said biological sample         with a multiplicity of polynucleotide probe sets consisting in a         combination of pools of polynucleotide probe sets chosen among         1640 probe sets of polynucleotides, each polynucleotide probe         set containing at least one polynucleotide probe chosen among a         library of nucleic acid sequences consisting in SEQ ID NO 1 to         SEQ ID NO 2938, each nucleic acid sequence hybridizing with a         gene, and/or at least one of its variants when present, said         gene being chosen among the group of genes consisting in SEQ ID         NO 5419 to SEQ ID NO 5677,         -   each given gene, when it presents NO variant, comprising at             least one target region, the nucleic acid sequence of which             is chosen among SEQ ID NO 2939 TO SEQ ID NO 4578, said             target region characterizing said gene,         -   each given gene, when it presents at least one variant,             comprising at least two target regions such that:             -   at least one of the respective nucleic acid sequences of                 said target region chosen among SEQ ID NO 2939 to SEQ ID                 NO 4578 is present in a given variant of said gene,             -   at least one of the respective nucleic acid sequences of                 said target region chosen among SEQ ID NO 2939 to SEQ ID                 NO 4578 is either absent in a given variant or is                 present in a configuration that differs from the one of                 said gene,             -   said two target regions characterizing said gene,             -   each variant of a given gene presenting at least one                 target region, said target region being such that its                 respective nucleic acid sequence is chosen among SEQ ID                 NO 2939 to SEQ ID NO 4578,             -   each variant is characterized by:                 -   either the combination of the presence of at least                     one target region also present in the gene, the                     respective nucleic acid sequence of which being                     chosen among SEQ ID NO 2939 to SEQ ID NO 4578, and                     the absence of at least one target region present in                     the gene the respective nucleic acid sequence of                     which being chosen among SEQ ID NO 2939 to SEQ ID NO                     4578,                 -   or the presence of a target region, the respective                     nucleic acid sequence of which being chosen among                     SEQ ID NO 2939 to SEQ ID NO 4578, said target region                     presenting a configuration that does not naturally                     exist in the gene,         -   each polynucleotide probe of a polynucleotide probe set             hybridizes with a specific nucleic acid sequence contained             in a given target region of the target regions which             characterize a given gene, and/or at least one of its             variants when present,         -   each given gene, and its variants when present, is             specifically recognized by at least a given polynucleotide             probe set,         -   each polynucleotide probe of a given pool of polynucleotide             probe set being such that it hybridizes with a given gene,             and/or at least one of its variants when present, and cannot             hybridize with any other gene different from said given             gene, and cannot hybridize with any other variants of a gene             different from said given gene,     -   b) determining a profile of expression variants of said genes         from the detection of the nucleic acid complexes formed in the         previous step,     -   c) comparing said profile with a reference gene expression         variant profile of a control subject,     -   d) concluding, from the previous comparison, the benign or         malignant state of the breast cancer in the subject.

In one preferred embodiment, the invention relates to a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject as defined above, by determining the variation of the expression of at least 20 determined genes of a group of determined genes represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ ID NO: 5693

said 20 determined genes being represented by the following nucleotidic sequences: SEQ ID Nos 5421; 5423; 5432; 5434; 5457; 5486; 5491; 5513; 5516; 5525; 5532; 5552; 5599; 5616; 5624; 5643; 5652; 5654; 5673 and 5683.

In one other preferred embodiment, the invention relates to a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject such as defined above, by 35 determined genes of a group of determined genes represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ ID NO: 5693

-   -   said 35 determined genes being represented by the following         nucleotidic sequences:

SEQ ID Nos 5421; 5423; 5431; 5432; 5434; 5440; 5457; 5462; 5470; 5486; 5491; 5505; 5513; 5516; 5525; 5532; 5546; 5552; 5594; 5599; 5601; 5603; 5616; 5618; 5624; 5627; 5630; 5643; 5645; 5652; 5654; 5660; 5669; 5673 and 5683.

Another preferred embodiment of the invention relates to a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject as previously defined, by determining the variation of the expression of at least 43 determined genes of a group of determined genes represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ ID NO: 5693

-   -   said 43 determined genes being represented by the following         nucleotidic sequences:     -   5486; 5491; 5499; 5505; 5513; 5516; 5520; 5525; 5532; 5546;         5549; 5552; 5594; 5599; 5601; 5603; 5616; 5618; 5623; 5624;         5627; 5630; 5643; 5645; 5651; 5652; 5654; 5660; 5669; 5673; 5683         and 5686.

Another particular embodiment of the invention relates to a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject as defined above, by determining the variation of the expression of at least 206 determined genes of a group of determined genes represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ ID NO: 5693

-   -   said 206 determined genes being represented by the following         nucleotidic sequences:     -   SEQ ID Nos 5420; 5421; 5422; 5423; 5425; 5426; 5427; 5428; 5429;         5430; 5431; 5432; 5434; 5435; 5436; 5437; 5438; 5439; 5440;         5441; 5442; 5443; 5444; 5445; 5446; 5447; 5449; 5450; 5451;         5452; 5453; 5454; 5455; 5456; 5457; 5459; 5460; 5461; 5462;         5463; 5465; 5467; 5468; 5470; 5473; 5475; 5476; 5479; 5480;         5482; 5484; 5485; 5486; 5487; 5488; 5489; 5490; 5491; 5492;         5493; 5495; 5496; 5497; 5498; 5499; 5502; 5503; 5505; 5506;         5507; 5508; 5509; 5511; 5512; 5513; 5515; 5516; 5517; 5518;         5519; 5520; 5523; 5524; 5525; 5526; 5528; 5529; 5530; 5531;         5532; 5533; 5534; 5536; 5538; 5539; 5540; 5543; 5544; 5545;         5546; 5547; 5549; 5550; 5552; 5553; 5554; 5556; 5558; 5559;         5560; 5562; 5563; 5564; 5565; 5566; 5567; 5568; 5569; 5570;         5571; 5573; 5574; 5575; 5576; 5577; 5578; 5581; 5582; 5585;         5587; 5588; 5590; 5591; 5593; 5594; 5595; 5597; 5598; 5599;         5600; 5601; 5602; 5603; 5604; 5605; 5606; 5608; 5609; 5610;         5611; 5612; 5613; 5615; 5616; 5617; 5618; 5622; 5623; 5624;         5625; 5627; 5629; 5630; 5631; 5632; 5633; 5634; 5635; 5637;         5638; 5639; 5640; 5641; 5642; 5643; 5644; 5645; 5647; 5648;         5649; 5651; 5652; 5653; 5654; 5656; 5657; 5658; 5660; 5661;         5665; 5667; 5669; 5672; 5673; 5675; 5676; 5677; 5678; 5680;         5681; 5683; 5684; 5686; 5687; 5689 and 5692.

In another preferred embodiment, the invention discloses a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject such as defined above, by determining the variation of the expression of 275 determined genes represented by the nucleotidic sequences SEQ ID NO: 5419 to SEQ ID NO: 5693.

Another particular embodiment of the invention relates to a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject such as defined above, wherein said variant being represented by the nucleic acid sequences SEQ ID NO 4579 to SEQ ID NO 5418 and SEQ ID NO 5694, the correspondence between each variant and its corresponding gene being represented in Table 1A-E and Table 6.

In still another embodiment, the invention relates to a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject as defined above, wherein target regions are characterized by the polynucleotide sequences SEQ ID NO 2939 to 4578, the each target region of each gene, and of each variant when they exist, being represented in Table 6.

In one other preferred embodiment, the invention relates to a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject such as previously defined, wherein each polynucleotide probe contained in a polynucleotide probe set is represented by the nucleic acid sequence of the library consisting in SEQ ID NO 1 to SEQ ID NO 2938,

the correspondence between each polynucleotide probe and its corresponding target region, said target region corresponding to a gene and its variants when present, being represented in Table 6.

In another advantageous embodiment, the invention relates to a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject, wherein the sub-group of genes is constituted by 12 to 259 genes chosen among the group consisting in SEQ ID NO 5419 to SEQ ID NO 5677.

In another embodiment, the invention discloses a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor described above, wherein the sub-group of genes is constituted by the 259 genes of the group consisting in SEQ ID NO 5419 to SEQ ID NO 5677.

In a more particular embodiment, the invention relates to a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor in a biological sample from a subject, wherein said set of polynucleotide probes are chosen among the group consisting in:

at least 50 polynucleotide probe sets, particularly at least 100 polynucleotide probe sets, more particularly at least 150 polynucleotide probes sets, more particularly at least 200 polynucleotide probe sets, more particularly at least 1228 polynucleotide probe sets and more particularly 1640 polynucleotide probe sets of the library of nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO 2938.

The sub-groups of 50, 100, 150, 200 polynucleotide probe sets are defined as the Top sub-groups allowing to determine the benign or malignant status of the tumor.

It is also disclosed in the invention that the multiplicity of probe sets can be constituted by at least 300 polynucleotide probe sets, more particularly at least 400 polynucleotide probe sets, more particularly at least 500 polynucleotide probe sets, more particularly at least 600 polynucleotide probe sets, more particularly at least 700 polynucleotide probe sets, more particularly at least 800 polynucleotide probe sets, more particularly at least 900 polynucleotide probe sets, more particularly at least 1000 polynucleotide probe sets, more particularly at least 1100 polynucleotide probe sets, more particularly at least 1228 polynucleotide probe sets, more particularly at least 1400 polynucleotide probe sets, and more particularly 1640 polynucleotide probe sets.

All the polynucleotide probes contained in the polynucleotide probe sets used in the method of the invention are chosen among a library of nucleic acid sequences consisting SEQ ID NO 1 to SEQ ID NO 2938.

In one embodiment, the invention discloses a method described above, wherein a variant of a given gene is chosen among the group of variants consisting in SEQ ID NO 4579 to SEQ ID NO 5418.

The method of the invention allows to detect the variation of expression genes, and their variants when they exist, said genes being characterized in that they consist in the nucleic acid sequences chosen among the group consisting in SEQ ID NO 5419 to SEQ ID NO 5677 and said variants being characterized in that they consist in the nucleic acid sequence chosen among the group consisting in SEQ ID NO 4579 to SEQ ID NO 5418.

In the invention, it is also disclosed a method for the in vitro and/or ex vivo determination of the benign or malignant state of a breast tumor, wherein the variation of expression of a gene, and/or at least one of its variants when present, said gene being chosen in the group consisting in SEQ ID NO 5419 to SEQ ID NO 5693, is

-   -   Over represented (Up-regulated), or     -   Under represented (Down-regulated).

Each gene expression, and expression of its variants if they exist, revealed by the method of the invention corresponds to an expression product of a gene of the group consisting in SEQ ID NO 5419 to SEQ ID NO 5693.

These variants are normally expressed in a subject non afflicted by breast cancer. These variants are also expressed in the biological of subject afflicted by benign breast cancer or malignant breast cancer. Each variant have a specific expression level corresponding to the state of the breast cancer. Each variant can then be overexpressed compare to the same variant expressed in a normal subject, or under expressed comparing to the same variant expressed in a normal subject.

The genes, and/or their variants are up-regulated, preferably when their expression levels are more than 1.7 fold higher than the expression levels of said genes in a patient non afflicted by a breast tumor, and significantly different (preferably with a significant coefficient value of less than 0.05). The genes, and/or their variants are down-regulated, preferably when their expression levels are less than 1.7 fold lower than the expression levels of said genes in a patient non afflicted by a breast tumor, and significantly different (preferably with a significant coefficient value of less than 0.05).

In a particular embodiment, the invention discloses a method described above, wherein the nucleic acid molecules from the biological sample of the subject are mRNA/or cDNA, said mRNA resulting from the expression of the genes consisting in SEQ ID NO 5419 to SEQ ID NO 5693, and/or at least one of their variants when present, represented by the nucleotidic sequences SEQ ID NO 4579 to SEQ ID NO 5418 and SEQ ID NO 5694.

In the invention, nucleic acid molecules are extracted from the biological sample of the subject, prior to be contacted with the set of polynucleotide probes, immobilized in a support.

The extraction and preparation of said nucleic acid molecules from the biological sample of the subject is made with a routine protocol commonly used by a skilled man in the art.

More particularly, the RNA are extracted from the biological sample, eventually, mRNA are isolated from the total RNA. In the case of the use of cDNA, mRNA are reverse-transcripted with a standard procedure.

The invention relates to a kit for the in vitro and/or ex vivo determination of benign or malignant status of a breast tumor, comprising:

-   -   a multiplicity as defined above, or     -   a microarray as defined above.

The invention relates to a kit for the in vitro and/or ex vivo determination of benign or malignant status of a breast tumor, comprising the following group of polynucleotide probes:

-   -   SEQ ID NOs 136; 137; 138; 157; 158; 159; 167; 168; 169; 171;         172; 173; 177; 312; 313; 313; 314; 315; 316; 317; 324; 325; 326;         327; 328; 329; 330; 331; 333; 334; 335; 336; 339; 340; 341; 345;         346; 347; 348; 353; 360; 361; 364; 365; 366; 367; 368; 369; 370;         374; 375; 790; 791; 792; 793; 794; 795; 969; 972; 981; 1081;         1082; 1083; 1129; 1140; 1141; 1158; 1159; 1160; 1161; 1162;         1165; 1166; 1167; 1168; 1169; 1170; 1171; 1185; 1186; 1194;         1198; 1199; 1200; 1203; 1262; 1263; 1264; 1267; 1268; 1269;         1519; 1520; 1521; 1522; 1523; 1524; 1534; 1535; 1536; 1544;         1545; 1546; 1551; 1552; 1553; 1554; 1555; 1556; 1557; 2026;         2027; 2028; 2179; 2180 and 2181,

preferably, wherein SEQ ID NOs 167; 168; 177; 312; 313; 327; 328; 329; 331; 364; 365; 366; 368; 370; 1185; 1186; 1194; 1523; 1524; 1551; 1552 and 1553 are present twice,

-   -   SEQ ID NO 316 is present in three copies and SEQ ID NO 315 is         present in 5 copies, or SEQ ID NO 120; 136; 137; 138; 154; 155;         156; 157; 158; 159; 167; 168; 169; 171; 172; 173; 174; 175; 176;         177; 312; 313; 314; 315; 316; 316; 317; 324; 325; 326; 327; 328;         329; 330; 331; 332; 333; 334; 335; 336; 337; 338; 339; 340; 341;         345; 346; 347; 348; 349; 350; 351; 352; 353; 354; 355; 356; 360;         361; 363; 364; 365; 366; 367; 368; 369; 370; 371; 374; 375; 376;         378; 379; 380; 381; 555; 556; 557; 558; 560; 561; 562; 566; 567;         788; 789; 790; 791; 792; 793; 794; 795; 800; 801; 802; 821; 822;         823; 969; 971; 972; 981; 1056; 1057; 1058; 1075; 1076; 1077;         1081; 1082; 1083; 1087; 1088; 1089; 1103; 1104; 1105; 1114;         1115; 1116; 1123; 1124; 1125; 1129; 1130; 1131; 1140; 1141;         1158; 1159; 1160; 1161; 1162; 1163; 1164; 1165; 1166; 1167;         1168; 1169; 1170; 1171; 1172; 1180; 1181; 1185; 1186; 1187;         1188; 1189; 1190; 1191; 1192; 1193; 1194; 1195; 1196; 1198;         1199; 1200; 1201; 1202; 1203; 1207; 1262; 1263; 1264; 1267;         1268; 1269; 1509; 1510; 1511; 1519; 1520; 1521; 1522; 1523;         1524; 1528; 1529; 1534; 1535; 1536; 1544; 1545; 1546; 1551;         1552; 1553; 1554; 1555; 1556; 1557; 1561; 1562; 1682; 1683;         1684; 1776; 1777; 1778; 2023; 2024; 2025; 2026; 2027; 2028;         2173; 2174; 2175; 2176; 2177; 2178; 2179; 2180; 2181; 2762;         2763; 2764; 2860; 2861; 2862; 2883; 2884 and 2885,

preferably, wherein SEQ ID NOs 167; 168; 177; 312; 313; 316; 317; 327; 329; 330; 353; 361; 364; 365; 366; 367; 368; 369; 370; 821; 822; 823; 1129; 1164; 1185; 1186; 1187; 1188; 1189; 1203; 1523; 1551; 1552 and 1553 are present twice, SEQ ID NOs 328; 331; 1162; 1194; 1519; 1520; 1521 and 1524 are present in three copies and SEQ ID NO 315 is present in 6 copies, or

-   -   SEQ ID NOs 4; 5; 6; 120; 136; 137; 138; 154; 155; 156; 157; 158;         159; 167; 168; 169; 171; 172; 173; 174; 175; 176; 177; 197; 248;         254; 255; 305; 306; 307; 312; 313; 314; 315; 316; 317; 324; 325;         326; 327; 328; 329; 330; 331; 332; 333; 334; 335; 336; 337; 338;         339; 340; 341; 345; 346; 347; 348; 349; 350; 351; 352; 353; 354;         355; 356; 360; 361; 362; 363; 364; 365; 366; 367; 367; 368; 369;         370; 371; 374; 375; 376; 377; 378; 379; 380; 381; 513; 514; 515;         552; 553; 554; 555; 556; 557; 558; 559; 560; 561; 562; 566; 567;         783; 784; 785; 788; 789; 790; 791; 792; 793; 794; 795; 796; 797;         798; 799; 800; 801; 802; 803; 804; 805; 806; 807; 808; 812; 813;         814; 818; 821; 822; 823; 968; 969; 970; 971; 972; 981; 1056;         1057; 1058; 1061; 1062; 1063; 1064; 1065; 1066; 1067; 1068;         1069; 1070; 1071; 1075; 1076; 1077; 1080; 1081; 1082; 1083;         1087; 1088; 1089; 1103; 1104; 1105; 1114; 1115; 1116; 1123;         1124; 1125; 1129; 1130; 1131; 1139; 1140; 1141; 1158; 1159;         1160; 1161; 1162; 1163; 1164; 1165; 1166; 1167; 1168; 1169;         1170; 1171; 1172; 1174; 1175; 1176; 1180; 1181; 1185; 1186;         1187; 1188; 1189; 1190; 1191; 1192; 1193; 1194; 1195; 1196;         1197; 1198; 1199; 1200; 1201; 1202; 1203; 1204; 1205; 1206;         1207; 1262; 1263; 1264; 1267; 1268; 1269; 1284; 1285; 1315;         1469; 1470; 1471; 1509; 1510; 1511; 1515; 1516; 1517; 1519;         1520; 1521; 1522; 1523; 1524; 1528; 1529; 1534; 1535; 1536;         1537; 1538; 1539; 1544; 1545; 1546; 1550; 1551; 1552; 1553;         1554; 1555; 1556; 1557; 1558; 1559; 1560; 1561; 1562; 1580;         1581; 1582; 1671; 1682; 1683; 1684; 1685; 1686; 1690; 1691;         1692; 1776; 1777; 1778; 1788; 1789; 1790; 1890; 1891; 1892;         1952; 1953; 1954; 1963; 2023; 2024; 2025; 2026; 2027; 2028;         2065; 2067; 2088; 2089; 2090; 2091; 2173; 2174; 2175; 2176;         2177; 2178; 2179; 2180; 2181; 2196; 2201; 2229; 2230; 2231;         2536; 2537; 2538; 2576; 2577; 2578; 2599; 2600; 2762; 2763;         2764; 2774; 2775; 2776; 2860; 2861; 2862; 2883; 2884 and 2885,

preferably, wherein SEQ ID NOs 167; 168; 177; 312; 313; 317; 327; 329; 330; 353; 361; 363; 364; 365; 366; 369; 370; 371; 558; 567; 796; 797; 801; 806; 807; 808; 813; 814; 821; 822; 823; 969; 1056; 1057; 1058; 1129; 1141; 1163; 1164; 1185; 1186; 1187; 1188; 1189; 1199; 1203; 1469; 1470; 1471; 1523; 1551; 1552 and 1553 are present twice, SEQ ID NOs 316; 328; 331; 368; 788; 1194; 1519; 1520; 1521; 1524 are present in three copies, SEQ ID NO 1162 is present in 4 copies and SEQ ID NO 315 is present in 6 copies, or

-   -   SEQ ID NOs 4; 5; 6; 120; 121; 122; 123; 130; 131; 132; 136; 137;         138; 154; 155; 156; 157; 158; 159; 167; 168; 169; 171; 172; 173;         174; 175; 176; 177; 195; 196; 197; 198; 199; 200; 248; 254; 255;         305; 306; 307; 312; 313; 314; 315; 316; 317; 324; 325; 326; 327;         328; 329; 330; 331; 332; 333; 334; 335; 336; 337; 338; 339; 340;         341; 345; 346; 347; 348; 349; 350; 351; 352; 353; 354; 355; 356;         360; 361; 362; 363; 364; 365; 366; 367; 368; 369; 370; 371; 374;         375; 376; 377; 378; 379; 380; 381; 513; 514; 515; 552; 553; 554;         555; 556; 557; 558; 559; 560; 561; 562; 563; 564; 565; 566; 567;         783; 784; 785; 788; 789; 790; 791; 792; 793; 794; 795; 796; 797;         798; 799; 800; 801; 802; 803; 804; 805; 806; 807; 808; 809; 810;         811; 812; 813; 814; 815; 816; 817; 818; 821; 822; 823; 824; 825;         826; 840; 841; 845; 846; 847; 868; 968; 969; 970; 971; 972; 973;         974; 975; 976; 977; 981; 1056; 1057; 1058; 1059; 1060; 1061;         1062; 1063; 1064; 1065; 1066; 1067; 1068; 1069; 1070; 1071;         1075; 1076; 1077; 1080; 1081; 1082; 1083; 1084; 1085; 1086;         1087; 1088; 1089; 1094; 1095; 1096; 1103; 1104; 1105; 1110;         1111; 1112; 1114; 1115; 1116; 1123; 1124; 1125; 1126; 1127;         1128; 1129; 1130; 1131; 1139; 1140; 1141; 1158; 1159; 1160;         1161; 1162; 1163; 1164; 1165; 1166; 1167; 1168; 1169; 1170;         1171; 1172; 1174; 1175; 1176; 1180; 1181; 1185; 1186; 1187;         1188; 1189; 1190; 1191; 1192; 1193; 1194; 1195; 1196; 1197;         1198; 1199; 1200; 1201; 1202; 1203; 1204; 1205; 1206; 1207;         1229; 1230; 1242; 1243; 1244; 1245; 1250; 1251; 1252; 1262;         1263; 1264; 1265; 1266; 1267; 1268; 1269; 1270; 1271; 1272;         1284; 1285; 1315; 1335; 1407; 1408; 1469; 1470; 1471; 1509;         1510; 1511; 1512; 1513; 1514; 1515; 1516; 1517; 1519; 1520;         1521; 1522; 1523; 1524; 1528; 1529; 1534; 1535; 1536; 1537;         1538; 1539; 1544; 1545; 1546; 1550; 1551; 1552; 1553; 1554;         1555; 1556; 1557; 1558; 1559; 1560; 1561; 1562; 1563; 1564;         1580; 1581; 1582; 1586; 1587; 1588; 1671; 1682; 1683; 1684;         1685; 1686; 1687; 1688; 1689; 1690; 1691; 1692; 1743; 1744;         1745; 1776; 1777; 1778; 1788; 1789; 1790; 1890; 1891; 1892;         1896; 1897; 1898; 1952; 1953; 1954; 1963; 1974; 2023; 2024;         2025; 2026; 2027; 2028; 2061; 2062; 2063; 2065; 2067; 2068;         2072; 2083; 2084; 2085; 2088; 2089; 2090; 2091; 2092; 2173;         2174; 2175; 2176; 2177; 2178; 2179; 2180; 2181; 2196; 2201;         2229; 2230; 2231; 2381; 2382; 2383; 2536; 2537; 2538; 2576;         2577; 2578; 2599; 2600; 2601; 2602; 2603; 2762; 2763; 2764;         2774; 2775; 2776; 2778; 2779; 2783; 2794; 2860; 2861; 2862;         2883; 2884 and 2885,

preferably, wherein SEQ ID NOs 167; 168; 177; 312; 313; 317; 327; 329; 330; 353; 361; 363; 364; 365; 366; 367; 369; 370; 371; 558; 567; 796; 797; 801; 806; 807; 808; 813; 814; 821; 822; 823; 845; 968; 970; 972; 1056; 1057; 1058; 1085; 1114; 1115; 1116; 1123; 1124; 1125; 1129; 1141; 1163; 1164; 1185; 1186; 1187; 1188; 1189; 1199; 1203; 1523; 1551; 1552; 1553; 1557; 1586; 1587; 1588; 1952; 1953; 1954; 2088; 2090; 2091; 2762; 2763 and 2764 are present twice, SEQ ID NOs 316; 328; 331; 368; 788; 1284; 1285; 1469; 1470; 1471; 1519; 1520; 1521; 1524; 2065; 2067 and 2089 are present in three copies, SEQ ID NO 1194 is present in 4 copies and SEQ ID NOs 315 and 1162 are present in 6 copies, or

-   -   the polynucleotide probes contained in said 1228 polynucleotide         probe sets being represented in the first 1228 lines of the         Table 7, or     -   the nucleic acid sequence of the polynucleotide probes contained         in said 1640 polynucleotide probe sets being represented in         Table 7.

The invention also relates to

-   -   a micro-array comprising the library of nucleic acid sequences         consisting in SEQ ID NO 1 to SEQ ID NO 2938, or     -   a multiplicity of polynucleotide probe sets chosen among the         group consisting in:         -   a multiplicity of 1228 polynucleotide probe sets comprising             nucleic acid sequences chosen among the group consisting in             SEQ ID NO 1 to SEQ ID NO 2938, or     -   a multiplicity of 200 polynucleotide probe sets comprising         nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO         2938, or     -   a multiplicity of 150 polynucleotide probe sets comprising         nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO         2938, or     -   a multiplicity of 100 polynucleotide probe sets comprising         nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO         2938, and in particular consisting in SEQ ID NO 120, SEQ ID NO         138, SEQ ID NO 140, SEQ ID NO 154, SEQ ID NO 155, SEQ ID NO 156,         SEQ ID NO 157, SEQ ID NO 159, SEQ ID NO 166, SEQ ID NO 167, SEQ         ID NO 168, SEQ ID NO 169, SEQ ID NO 171, SEQ ID NO 173, SEQ ID         NO 174, SEQ ID NO 175, SEQ ID NO 176, SEQ ID NO 177, SEQ ID NO         312, SEQ ID NO 314, SEQ ID NO 315, SEQ ID NO 317, SEQ ID NO 324,         SEQ ID NO 326, SEQ ID NO 327, SEQ ID NO 328, SEQ ID NO 329, SEQ         ID NO 330, SEQ ID NO 331, SEQ ID NO 331, SEQ ID NO 332, SEQ ID         NO 333, SEQ ID NO 335, SEQ ID NO 336, SEQ ID NO 337, SEQ ID NO         338, SEQ ID NO 339, SEQ ID NO 341, SEQ ID NO 345, SEQ ID NO 347,         SEQ ID NO 349, SEQ ID NO 350, SEQ ID NO 351, SEQ ID NO 352, SEQ         ID NO 353, SEQ ID NO 354, SEQ ID NO 355, SEQ ID NO 356, SEQ ID         NO 360, SEQ ID NO 361, SEQ ID NO 363, SEQ ID NO 364, SEQ ID NO         364, SEQ ID NO 366, SEQ ID NO 367, SEQ ID NO 369, SEQ ID NO 369,         SEQ ID NO 371, SEQ ID NO 376, SEQ ID NO 378, SEQ ID NO 379, SEQ         ID NO 380, SEQ ID NO 381, SEQ ID NO 555, SEQ ID NO 556, SEQ ID         NO 557, SEQ ID NO 558, SEQ ID NO 560, SEQ ID NO 561, SEQ ID NO         562, SEQ ID NO 566, SEQ ID NO 567, SEQ ID NO 788, SEQ ID NO 789,         SEQ ID NO 790, SEQ ID NO 792, SEQ ID NO 793, SEQ ID NO 795, SEQ         ID NO 800, SEQ ID NO 801, SEQ ID NO 802, SEQ ID NO 821, SEQ ID         NO 822, SEQ ID NO 823, SEQ ID NO 969, SEQ ID NO 971, SEQ ID NO         972, SEQ ID NO 981, SEQ ID NO 1056, SEQ ID NO 1057, SEQ ID NO         1058, SEQ ID NO 1075, SEQ ID NO 1076, SEQ ID NO 1077, SEQ ID NO         1081, SEQ ID NO 1083, SEQ ID NO 1087, SEQ ID NO 1088, SEQ ID NO         1089, SEQ ID NO 1103, SEQ ID NO 1104, SEQ ID NO 1105, SEQ ID NO         1114, SEQ ID NO 1115, SEQ ID NO 1116, SEQ ID NO 1123, SEQ ID NO         1124, SEQ ID NO 1125, SEQ ID NO 1129, SEQ ID NO 1130, SEQ ID NO         1131, SEQ ID NO 1140, SEQ ID NO 1141, SEQ ID NO 1142, SEQ ID NO         1143, SEQ ID NO 1151, SEQ ID NO 1158, SEQ ID NO 1159, SEQ ID NO         1162, SEQ ID NO 1163, SEQ ID NO 1163, SEQ ID NO 1164, SEQ ID NO         1165, SEQ ID NO 1166, SEQ ID NO 1167, SEQ ID NO 1169, SEQ ID NO         1170, SEQ ID NO 1171, SEQ ID NO 1172, SEQ ID NO 1172, SEQ ID NO         1180, SEQ ID NO 1181, SEQ ID NO 1185, SEQ ID NO 1186, SEQ ID NO         1187, SEQ ID NO 1188, SEQ ID NO 1189, SEQ ID NO 1189, SEQ ID NO         1190, SEQ ID NO 1191, SEQ ID NO 1192, SEQ ID NO 1193, SEQ ID NO         1194, SEQ ID NO 1195, SEQ ID NO 1196, SEQ ID NO 1198, SEQ ID NO         1200, SEQ ID NO 1201, SEQ ID NO 1202, SEQ ID NO 1203, SEQ ID NO         1207, SEQ ID NO 1262, SEQ ID NO 1264, SEQ ID NO 1267, SEQ ID NO         1269, SEQ ID NO 1509, SEQ ID NO 1510, SEQ ID NO 1511, SEQ ID NO         1519, SEQ ID NO 1520, SEQ ID NO 1520, SEQ ID NO 1521, SEQ ID NO         1522, SEQ ID NO 1523, SEQ ID NO 1524, SEQ ID NO 1524, SEQ ID NO         1528, SEQ ID NO 1529, SEQ ID NO 1534, SEQ ID NO 1536, SEQ ID NO         1544, SEQ ID NO 1546, SEQ ID NO 1551, SEQ ID NO 1553, SEQ ID NO         1554, SEQ ID NO 1556, SEQ ID NO 1557, SEQ ID NO 1561, SEQ ID NO         1562, SEQ ID NO 1682, SEQ ID NO 1683, SEQ ID NO 1684, SEQ ID NO         1776, SEQ ID NO 1777, SEQ ID NO 1778, SEQ ID NO 2023, SEQ ID NO         2024, SEQ ID NO 2025, SEQ ID NO 2026, SEQ ID NO 2028, SEQ ID NO         2173, SEQ ID NO 2174, SEQ ID NO 2175, SEQ ID NO 2176, SEQ ID NO         2177, SEQ ID NO 2178, SEQ ID NO 2179, SEQ ID NO 2181, SEQ ID NO         2762, SEQ ID NO 2763, SEQ ID NO 2764, SEQ ID NO 2860, SEQ ID NO         2861, SEQ ID NO 2862, SEQ ID NO 2883, SEQ ID NO 2884 and SEQ ID         NO 2885, or     -   a multiplicity of 50 polynucleotide probe sets comprising         nucleic acid sequences consisting in SEQ ID NO 1 to SEQ ID NO         2938, and in particular consisting in SEQ ID NO 138, SEQ ID NO         140, SEQ ID NO 157, SEQ ID NO 159, SEQ ID NO 167, SEQ ID NO 168,         SEQ ID NO 169, SEQ ID NO 171, SEQ ID NO 173, SEQ ID NO 177, SEQ         ID NO 312, SEQ ID NO 314, SEQ ID NO 315, SEQ ID NO 317, SEQ ID         NO 324, SEQ ID NO 326, SEQ ID NO 327, SEQ ID NO 329, SEQ ID NO         330, SEQ ID NO 331 SEQ ID NO 333, SEQ ID NO 335, SEQ ID NO 336,         SEQ ID NO 339, SEQ ID NO 341, SEQ ID NO 345, SEQ ID NO 347, SEQ         ID NO 353, SEQ ID NO 360, SEQ ID NO 361, SEQ ID NO 364, SEQ ID         NO 366, SEQ ID NO 367, SEQ ID NO 369, SEQ ID NO 790, SEQ ID NO         792, SEQ ID NO 793, SEQ ID NO 795, SEQ ID NO 969, SEQ ID NO 972,         SEQ ID NO 981, SEQ ID NO 1081, SEQ ID NO 1083, SEQ ID NO 1129,         SEQ ID NO 1140, SEQ ID NO 1141, SEQ ID NO 1151, SEQ ID NO 1158,         SEQ ID NO 1159, SEQ ID NO 1162, SEQ ID NO 1165, SEQ ID NO 1166,         SEQ ID NO 1167, SEQ ID NO 1169, SEQ ID NO 1170, SEQ ID NO 1171,         SEQ ID NO 1185, SEQ ID NO 1186, SEQ ID NO 1194, SEQ ID NO 1198,         SEQ ID NO 1200, SEQ ID NO 1203, SEQ ID NO 1262, SEQ ID NO 1264,         SEQ ID NO 1267, SEQ ID NO 1269, SEQ ID NO 1520, SEQ ID NO 1522,         SEQ ID NO 1523, SEQ ID NO 1524, SEQ ID NO 1534, SEQ ID NO 1536,         SEQ ID NO 1544, SEQ ID NO 1546, SEQ ID NO 1551, SEQ ID NO 1553,         SEQ ID NO 1554, SEQ ID NO 1556, SEQ ID NO 1557, SEQ ID NO 2026,         SEQ ID NO 2028, SEQ ID NO 2179 and SEQ ID NO 2181.

Preferably in the kit of the invention, the micro-array comprises 1228 polynucleotide probe sets that represent the best multiplicity of polynucleotide probe sets to characterize efficiently the benign or malignant status of the breast tumor of a subject.

Optionally, the kit of the invention may contain protocol and molecules to label nucleic acid molecules used to be contacted with the micro-array. Also, the kit of the invention may contain protocol and material for the extraction and purification of the nucleic acid molecules from the biological sample of a subject.

The contain of the kit is not limited to the described materials and protocols described above, and may contain any other material or procedures that can help a skilled man in the art to use the kit of the invention.

FIGS. 1 TO 6 ILLUSTRATE THE INVENTION

FIG. 1A represents a gene containing 3 exons, and its variants that lack at least one exon. T represents a Target region. The “bar code” associated to the presence or absence of a target region is indicated: 1=present; 0=absent.

FIG. 1B represents a gene containing 3 exons, and its variant that lacks one exon. T represents a Target region. The “bar code” associated to the presence or absence of a target region is indicated: 1=present; 0=absent.

FIG. 2 represents the notions of multiplicity, pool, probe set and probes of the invention.

FIG. 3A to 3G represent the gene and its variant when they exist and the corresponding target region.

FIG. 3A represents a gene having no variant and having one target region.

FIG. 3B represents a gene having no variant and having two target regions.

FIG. 3C represents a gene having one variant and having one target region.

FIG. 3D represents a gene having one variant and having two target regions.

FIG. 3E represents a gene having two variants and having two target regions.

FIG. 3F represents a gene having two variants and having three target regions.

FIG. 3G represents a gene having two variants and having three target regions, one of its target regions being in a configuration different in variant and gene.

FIG. 4 represents Heatmap of the 1656 exon-probes that present a more than two fold higher intensity in malignant condition. The FIG. 4 reports the intensities of exon-probes that present more than a two-fold higher intensity in malignant tumors. Each column represents a sample, and each raw represent an exon-probe.

FIG. 5 represents the correlation of each specimen with the average benign and malignant profiles. Each tumor is classified according to its correlation with the average expressions of the probes in the benign and malignant group respectively during one leave-one-out-step. The bisecting line defines a region of benign prediction (bottom right triangle) and malignant prediction (upper left triangle). Tumors from the benign group are depicted in black, and those from the malignant group, in grey. Any misclassifications correspond to benign samples located in the malignant prediction area and vice versa. Training set included 94 samples (benign tumor, n=24, malignant tumor, n=70).

FIG. 6 represents the correlation of each specimen in the validation set with the average benign and malignant profiles of the preferred 1,228 signature polynucleotide probe sets obtained on the patients in the training set. Validation set included 71 samples (benign tumor, n=21, malignant tumor, n=50). Each tumour is classified according to its correlation with the average expressions of the probes in the benign and malignant profiles. The bisecting line defines a region of benign prediction (bottom right triangle) and malignant prediction (upper left triangle). Tumours from the benign group are depicted in black, and those from the malignant group, in grey. Any misclassifications correspond to benign samples located in the malignant prediction area and vice versa.

The following examples illustrate the invention, but the invention is not limited to these examples.

EXAMPLE I Differentially Expressed Genes and Exons Between Malignant and Benign Breast Diseases

56652 probes (8%) presented a different intensity between malignant and benign conditions (adjusted p value<0.05). Of these, 37858 were exon-probes (B, T, and F) and 18794 were junction-probes (C, D, E). Of the 37858 exon-probes (B, T, F), 17441 were higher in malignant as opposed to benign diseases. The 17441 exon-probes (B, T, F) that were found higher in malignant condition referred to 12091 exons and 3391 genes. Of the 17441 exon-probes increased in malignant tumors, 1656 presented more than a two fold increased intensity in malignant conditions as compared to benign tumors. Heatmap of intensities for these 1656 probes is reported in FIG. 4. These 1656 probe sets referred to 1178 exons and 363 genes.

The level of gene expression was then determined as reported in patients and methods section. Among the 11921 filtered genes, 3733 were differentially expressed between cancer and benign conditions (adjusted p value <0.05). This accounts for 7% of the overall genes included in the array and 31% of the filtered genes. Of these, 1984 were overexpressed in malignant condition. Several of these genes are currently being targeted in therapeutics including TOP2A, VEGFA, AURKA, PARP1, RAS. Seventy-two genes presented more than a two fold increase of the mean value in breast cancer. As expected, a high proportion of these 72 highly overexpressed genes related to cell cycle activation and mitosis, including cyclins (CCNA2, CCNE2, CCNB2), cell division cycle family (CDC2, CKS1B, CKS2, NUF2), kinesin family members (KIF23, NDC80, KIF4A, KIF18A, MKLP2, KIF14) and centromere proteins (CENPF, CENPE). FIG. 3 reports the dot-plots for gene expression of the top 10 overexpressed genes. Two (PTTG1, NET1) of the 10 most overexpressed genes were considered as potential new therapeutic targets given their oncogenic properties. Pathways analyses using BioCarta database identified 7 pathways that presented an enrichment of genes differentially expressed in one or the other condition. Interestingly, genes involved in spliceosome assembly were significantly enriched in malignant condition (LS permutations, p=0.001, KS permutations, p=0.002), suggesting an activation of this phenomenon in breast cancer. Finally, the inventors identified 2675 exons (adjusted p value <0.05) overexpressed in malignant condition who were not located within the 1984 filtered genes whose geometric mean values differ between cancer and benign lesions. These 2675 exon-probes were located in 1559 genes. The splice index for the 2675 exon is reported in supplementary table 4. Numbers of these over-expressed exons located within unchanged genes have potential oncogenic properties. As illustration, probe sets for exon 9 casein kinase 1 delta (CSNK1D), exon 5-6 retinoblastoma binding protein 9 (RBBP9) and exon 21-22 Erbb2 interacting protein (ERBB2IP/LAP2) presented a 1.67 (adjusted p=0.005), 1.45 (adjusted p=0.006) and 1.6 (adjusted p=0.0005) fold increased intensity in malignant as compared to benign tumors. At the opposite, the geo mean ratio between cancer and benign tumors for gene expression levels were 1.09 (p=0.95), 1.04 (p=0.61) and 1.00 (p=0.96) for CSNK1D, RBBP9, ERBB2IP/LAP2 respectively. These findings suggest that a significant proportion of genes identified as unchanged may actually contain differentially expressed exons. These considerations suggest that analyses at exon level provide additional information to analyses at gene level, to decipher the transcriptional program of breast malignancy. Based on the finding that breast cancer and benign tumors present widely different exonic profiles, the inventors developed a molecular classifier for breast cancer diagnosis on FNA samples.

EXAMPLE II Development of a Molecular Classifier for Breast Cancer Diagnosis

Patients et Methods.

Patients.

94 patients have been included in the present study. These patients referred at the Institut Gustave Roussy for a clinical or radiological breast lesion in 2006. FNA was performed in all of these patients to assess the diagnosis of the breast lesion. A breast adenocarcinoma was diagnosed in 70 patients, and a benign lesion was diagnosed in 24 patients. Breast cancer diagnosis was based on the identification of cancer cells on the CNB or surgical specimen. The diagnosis of benign lesion was based on the identification of non-malignant epithelial cells on CNB and the identification of non-malignant epithelial cells in FNA sample together with lack of radiological change after 3 or 6 months follow-up. Patient characteristics are reported in Table 2.

TABLE 2 Table 2: patient characteristics Benign lesions Malignant lesions (n = 24) (n = 70) Median Age (range) 41 (16-74) 59 (30-92) Median clinical size (range) 17 mm (7-35) 29 mm (7-110) ACR classification ACR3 14 (58%) 0 ACR4 9 (37%) 13 (19%) ACR5 1 (5%) 56 (81%) Not assessable 1 Palpable lesion Yes 15 (65%) 53 (78%) NO 8 (35%) 15 (22%) Not assessable 1 2 Pathological tumor size (range) NA 28 mm (6-60) pTNM Stage Node negative disease 27 (45%) Node positive disease NA 20 (33%) Stage IV disease 1 (2%) Preoperative medical treatment 12 (20%) Not assessable 10 Tumor grade Grade 1 17 (27%) Grade 2 NA 24 (37%) Grade 3 23 (36%) Not Assessable 6 Estogen receptor expression ER negative 17 (25%) ER positive NA 50 (75%) Not assessable 3 Progesteron receptor expression PR negative 29 (43%) PR positive NA 39 (57%) Not assessable 3 Her2 status Overexpression 13 (20%) Not overexpressed NA 53 (80%) Not assessable 4

Sample Processing and Hybridization

RNA was extracted using RNEasy kit (Qiagen) from FNA specimen. Total RNA quality and quantity were evaluated using the RNA 6000 Nano LabChip kit with the Agilent 2100 Bioanalyzer.

Sample amplification and labeling was performed using the WT-Ovation Pico RNA Amplification System and the FL-Ovation cDNA Biotin Module v2 (NuGen, Inc., part #'s 3300-60 and 4200-60) according to manufacturer's instructions. Standard methods following recommendations of the manufacturer were used to hybridize the samples. A pan-genomic array has been designed to detect 138,636 splicing events. 20,649 genes are analyzed using this array. The overall number of probes included in this array was 6,079,562. The present study was focused on 703,680 Evidenced probes. Once hybridized, the arrays were washed and stained using the FS450-0001 Fluidics protocol prior to scanning using the Affymetrix GeneChip® Scanner 3000 7G. .DAT and .CEL images were visually inspected for anomalies and accurate grid placement. The .CEL files were imported into Partek® Genomics Suite and the data were processed using the Robust Multichip Average (RMA) background correction method followed by GC content background correction. Quantile normalization was performed across all arrays, and then data was Log 2 transformed and mean probe summarization was performed.

Normalization

Data were processed using the RMA background correction method followed by guanine-cytosine content background correction. Quantile normalization was performed across all arrays, and then data was log 2 transformed and mean probe summarization was performed.

Pre-Filtering

Starting from the 703,680 Evidenced probes, the inventors filtered out probes whose expression varied little across the 94 patient training set as follows: first the inventors floored the expression values at 10 (i.e. all expression values lower than 10 were replaced by 10), and secondly they deleted a probe from the data set if the ratio of the maximum by minimum intensity across the 94-patient set was higher or equal to 5 and if the difference between the maximum and minimum intensity was higher or equal to 100. In total 176,832 probes were retained for analysis after the pre-filtering step.

Statistical Analysis

The point biserial correlation coefficient was calculated for each probe between probe expression and a binary indicator which value was defined by the status of the patient (the indicator took the value 0 in patients who had benign tissue and the value 1 in tissues from patients with tumors) (Kraemer H C: Biserial correlation, in Encyclopedia of Statistical Science, Vol 1. Edited by Kotz S, Read C B. New York, Wiley, 1982, pp 276-280). The probes with the highest absolute correlation are those which are the most likely correlated with the occurrence of a tumor. The inventors used the t-test to test whether the point biserial correlation values were significantly different from 0 (Kraemer H C: Biserial correlation, in Encyclopedia of Statistical Science, Vol 1. Edited by Kotz S, Read C B. New York, Wiley, 1982, pp 276-280). In order to take the multiple testing issues into account they used a very stringent cut-off for statistical significance: 10e-8 (1 out of 100 million).

In order to develop a prediction rule to classify tissues from new patients with unknown status (benign vs. malignant), the inventors chose the nearest centroid prediction rule, which has been intensively studied on data from several microarray studies (S. Michiels, S. Koscielny, C. Hill. Prediction of cancer outcome with microarrays: a multiple random validation strategy. Lancet 2005; 365:488-92). This prediction rule classifies new patients according to the Pearson correlation between the expression of their signature probes and the average profiles in the two categories (the average benign and malignant profiles are defined as the vector of the average expression values of the signature probes in patients with benign and malignant tissues of the 94 patient training set), the predicted category being the one with the highest Pearson correlation. The signature probes were defined as those probes for which the p-value of test of significance of the point biserial correlation coefficient with the benign vs. malignant status was below a particular threshold.

Leave-one-out cross-validation was used to estimate the prediction accuracy of the prediction rule. One sample is left out, and the remaining samples are used to build the prediction rule, which is then used to classify the left-out sample. The entire model-building process was repeated for each leave-one-out training set to provide unbiased estimates of the prediction accuracy (Ntzani E E, Ioannidis J P. Predictive ability of DNA microarrays for cancer outcomes and correlates: an empirical assessment. Lancet 2003; 362: 1439-44; Simon R, Radmacher M D, Dobbin K, McShane L M. Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. J Natl Cancer Inst 2003; 95: 14-8): correlation coefficients were recalculated, ordered according to their absolute value, the signature probes defined and the nearest centroid prediction rule was constructed. Then, the inventors predicted the outcome of the one sample they left out in the first place based on the highest correlation coefficient it had with the average benign and the malignant profile from the 93 other samples. At the end of the leave-one-out cross-validation procedure, the inventors counted in how many cases the predictions were correct and in how many cases the predictions were incorrect.

The inventors repeated the above performance evaluation procedure based on leave-one-out cross-validation for different p-value thresholds for signature genes in order to find an optimal prediction rule yielding the lowest number of misclassified patients. They tried the following four p-values thresholds to define the signature genes: 10e-11, 10e-10, 10e-09 and 10e-8.

The inventors also provide subsets of 50, 100, 150 and 200 polynucleotide probe sets whose expression can be used to classify the benign and malignant status of tissues of new patients.

Results:

The inventors found 1,640 Evidenced polynucleotide probe sets that were significantly associated with malignancy at the stringent p-value cut-off of p<10e-8 (see Table 3). The polynucleotide probe sets with positive correlation are those which have increased expression in malignant tissues, those with negative correlation have increased expression in the benign tissues.

The inventors developed an optimal prediction rule based on the methodology explained above. The preferred p-value threshold for defining signature genes was p<10e-9. This p-value threshold corresponds to the first 1228 polynucleotide probe sets in Table 3 (with identifier no 1 to no 1228). When using leave-one-out cross-validation to estimated the prediction accuracy of the prediction rule with this particular threshold, they obtained 0 out of 24 patients (0%) with benign status that were misclassified and 0 out of 70 patients with malignant status that were misclassified (0%). This corresponds to a sensitivity of 100% and a specificity of 100%.

TABLE 3 variant No Probeset_ID correl abs_correl tstat pvalue Event_ID reference_representative_accession variant_representative_accession variant_representative_database nb 1 1756.022.2-C_at −0.91151 0.91150698 21.25746 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 2 1756.029.1-D_at −0.89254 0.89253605 18.98306 <1e−16  1756.029. NM_000109.2 BI551231.1 EST 1 3 1756.026.1-C_at −0.89221 0.8922081 18.94884 <1e−16  1756.026. NM_000109.2 M63075.1 mRNA 1 4 1756.022.4-T_at −0.87666 0.87666398 17.47788 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 5 1756.011.1-B_at −0.87581 0.87581182 17.40484 <1e−16  1756.011. NM_000109.2 AX114289.1 GENBANK_PATENT 1 6 1308.008.1-C_at −0.86492 0.86492412 16.52922 <1e−16  1308.008. NM_130778.1 BE148646.1 EST 1 7 1756.022.3-F_at −0.84937 0.84936983 15.43558 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 8 3861.020.1-D_at −0.84359 0.84358795 15.06806 <1e−16  3861.020. NM_000526.3 BM018298.1 EST 1 9 1756.011.1-F_at −0.83903 0.83903098 14.7913 <1e−16  1756.011. NM_000109.2 AX114289.1 GENBANK_PATENT 1 10 4629.007.1-F_at −0.83653 0.83653075 14.64397 <1e−16  4629.007. NM_022844.1 AY520817.1 mRNA 16 11 1756.022.4-B_at −0.83558 0.83557952 14.58872 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 12 1756.024.1-F_at −0.83305 0.83304555 14.44365 <1e−16  1756.024. NM_000109.2 CD299688.1 EST 1 13 3861.019.1-T_at −0.83092 0.83091678 14.32409 <1e−16  3861.019. NM_000526.3 BQ359236.1 EST 1 14 1756.026.1-T_at −0.83005 0.83004684 14.27581 <1e−16  1756.026. NM_000109.2 M63075.1 mRNA 1 15 1756.022.1-B_at −0.82986 0.8298586 14.26541 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 16 3861.001.1-T_at −0.82888 0.82888471 14.21185 <1e−16  3861.001. NM_000526.3 BG677893.1 EST 1 17 1308.008.1-T_at −0.82731 0.82731458 14.12635 <1e−16  1308.008. NM_130778.1 BE148646.1 EST 1 18 4629.020.1-C_at −0.82454 0.82453945 13.97781 <1e−16  4629.020. NM_022844.1 BI819760.1 EST 1 19 1756.027.1-T_at −0.82281 0.82280868 13.88676 <1e−16  1756.027. NM_000109.2 S60971.1 mRNA 1 20 3861.013.1-T_at −0.82153 0.82153279 13.82042 <1e−16  3861.013. NM_000526.3 BM563823.1 EST 1 21 4629.020.1-F_at −0.8194 0.81940128 13.71099 <1e−16  4629.020. NM_022844.1 BI819760.1 EST 1 22 3861.001.1-B_at −0.81782 0.8178189 13.63089 <1e−16  3861.001. NM_000526.3 BG677893.1 EST 1 23 1756.022.4-F_at −0.81687 0.81686612 13.5831 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 24 1756.026.1-F_at −0.81627 0.81626518 13.55314 <1e−16  1756.026. NM_000109.2 M63075.1 mRNA 1 25 1756.022.2-T_at −0.81571 0.815705 13.52532 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 26 1756.022.2-F_at −0.81498 0.8149825 13.48962 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 27 3861.022.1-B_at −0.81494 0.81494272 13.48766 <1e−16  3861.022. NM_000526.3 BI085500.1 EST 1 28 3868.004.1-D_at −0.81412 0.81412336 13.4474 <1e−16  3868.004. NM_005557.2 BM045170.1 EST 1 29 4629.015.1-C_at −0.81348 0.81347687 13.41581 <1e−16  4629.015. NM_022844.1 DB284318.1 EST 1 30 6422.002.1-E_at −0.81346 0.81346311 13.41514 <1e−16  6422.002. NM_003012.3 AX565729.1 GENBANK_PATENT 3 31 3861.001.1-D_at −0.81115 0.81115184 13.30339 <1e−16  3861.001. NM_000526.3 BG677893.1 EST 1 32 1756.022.1-F_at −0.81112 0.81111566 13.30165 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 33 1308.003.1-T_at −0.80635 0.80635142 13.07706 <1e−16  1308.003. NM_130778.1 NM_000494.2 REFSEQ 19 34 3868.005.1-B_at −0.8061 0.80610095 13.06545 <1e−16  3868.005. NM_005557.2 BG682632.1 EST 1 35 1308.007.1-F_at −0.8044 0.80440011 12.98719 <1e−16  1308.007. NM_130778.1 BF916393.1 EST 1 36 1308.009.1-F_at −0.8039 0.80390038 12.96437 <1e−16  1308.009. NM_130778.1 DA425187.1 EST 1 37 3861.007.1-E_at −0.8038 0.80380368 12.95997 <1e−16  3861.007. NM_000526.3 BG682207.1 EST 11 38 4629.016.1-D_at −0.80378 0.80377953 12.95887 <1e−16  4629.016. NM_022844.1 DB289769.1 EST 1 39 3084.007.1-F_at −0.80131 0.80130924 12.84728 <1e−16  3084.007. NM_013957.1 CN603653.1 EST 3 40 3861.007.1-F_at −0.79968 0.79968463 12.77489 <1e−16  3861.007. NM_000526.3 BG682207.1 EST 11 41 26289.003.1-E_at −0.79508 0.7950811 12.57397 <1e−16  26289.003 NM_174858.1 AK090967.1 mRNA 3 42 1756.028.1-T_at −0.79389 0.79388677 12.52282 <1e−16  1756.028. NM_000109.2 CQ733377.1 GENBANK_PATENT 1 43 4629.021.1-E_at −0.7935 0.79350334 12.50648 <1e−16  4629.021. NM_022844.1 CQ717811.1 GENBANK_PATENT 1 44 4629.020.1-D_at −0.78948 0.78947575 12.33726 <1e−16  4629.020. NM_022844.1 BI819760.1 EST 1 45 5764.001.1-F_at −0.78733 0.78733221 12.24894 <1e−16  5764.001. NM_002825.5 AX135902.1 GENBANK_PATENT 3 46 3815.002.3-F_at −0.78506 0.78505901 12.15655 <1e−16  3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 47 3852.020.1-T_at −0.78181 0.78181405 12.02688 <1e−16  3852.020. NM_000424.2 DA764792.1 EST 1 48 4629.007.1-E_at −0.78063 0.78063131 11.98024 <1e−16  4629.007. NM_022844.1 AY520817.1 mRNA 16 49 128553.003.1-F −0.78062 0.78061872 11.97975 <1e−16  128553.00 NM_173485.2 BP394387.1 EST 1 50 26289.003.1-F_at −0.78004 0.78004 11.95705 <1e−16  26289.003 NM_174858.1 AK090967.1 mRNA 3 51 3815.002.2-F_at −0.77826 0.77825678 11.88761 <1e−16  3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 52 1756.029.1-B_at −0.77795 0.77795132 11.87578 <1e−16  1756.029. NM_000109.2 BI551231.1 EST 1 53 4629.005.1-E_at −0.7779 0.77790413 11.87396 <1e−16  4629.005. NM_022844.1 CB963138.1 EST 3 54 4629.010.1-B_at −0.77786 0.77786129 11.8723 <1e−16  4629.010. NM_022844.1 AI285326.1 EST 1 55 6422.001.1-T_at −0.77686 0.77685589 11.83356 <1e−16  6422.001. NM_003012.3 CQ850220.1 GENBANK_PATENT 2 56 5764.001.1-E_at −0.77561 0.77560627 11.78573 <1e−16  5764.001. NM_002825.5 AX135902.1 GENBANK_PATENT 3 57 3861.008.1-F_at −0.77548 0.77547795 11.78084 <1e−16  3861.008. NM_000526.3 BE184532.1 EST 1 58 1756.030.2-T_at −0.77479 0.77478755 11.75458 <1e−16  1756.030. NM_000109.2 BM929495.1 EST 1 59 3084.009.1-B_at −0.77277 0.77277347 11.67858 <1e−16  3084.009. NM_013957.1 U02327.1 mRNA 2 60 26289.002.1-T_at −0.77207 0.7720739 11.65239 <1e−16  26289.002 NM_174858.1 BF966377.1 EST 1 61 1756.022.5-B_at −0.77137 0.77136743 11.62604 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 62 4629.007.1-D_at −0.77091 0.77091122 11.60908 <1e−16  4629.007. NM_022844.1 AY520817.1 mRNA 16 63 23336.001.1-C_at −0.76979 0.76978838 11.56754 <1e−16  23336.001 NM_145728.1 AJ697971.1 mRNA 1 64 1308.003.1-D_at −0.76831 0.7683088 11.5132 <1e−16  1308.003. NM_130778.1 NM_000494.2 REFSEQ 19 65 1756.022.3-T_at −0.76731 0.76730759 11.47668 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 66 3861.020.1-T_at −0.76715 0.76714705 11.47084 <1e−16  3861.020. NM_000526.3 BM018298.1 EST 1 67 3861.022.1-C_at −0.76448 0.76448457 11.37481 <1e−16  3861.022. NM_000526.3 BI085500.1 EST 1 68 3852.012.2-B_at −0.76294 0.76294046 11.31975 <1e−16  3852.012. NM_000424.2 CQ733668.1 GENBANK_PATENT 1 69 26289.012.1-E_at −0.76192 0.76191947 11.28361 <1e−16  26289.012 NM_174858.1 BG189938.1 EST 1 70 23336.003.1-T_at −0.76122 0.76122392 11.2591 <1e−16  23336.003 NM_145728.1 CQ723645.1 GENBANK_PATENT 1 71 26289.007.1-B_at −0.76082 0.76081931 11.24488 <1e−16  26289.007 NM_174858.1 DA259560.1 EST 1 72 84417.001.1-T_at −0.76076 0.76075848 11.24275 <1e−16  84417.001 NM_032411.1 BI561114.1 EST 1 73 3861.018.1-D_at −0.7605 0.76050387 11.23382 <1e−16  3861.018. NM_000526.3 BM019687.1 EST 1 74 3852.004.1-B_at −0.76039 0.76038766 11.22975 <1e−16  3852.004. NM_000424.2 BE715131.1 EST 1 75 90865.006.1-B_at −0.76035 0.76035315 11.22855 <1e−16  90865.006 NM_033439.2 AV707946.1 EST 1 76 4629.021.1-F_at −0.76012 0.7601167 11.22027 <1e−16  4629.021. NM_022844.1 CQ717811.1 GENBANK_PATENT 1 77 3861.018.1-T_at −0.76002 0.76001693 11.21679 <1e−16  3861.018. NM_000526.3 BM019687.1 EST 1 78 1756.022.1-T_at −0.75998 0.75998388 11.21563 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 79 1264.003.1-B_at −0.75956 0.75955538 11.20068 <1e−16  1264.003. NM_001299.4 CV811526.1 EST 1 80 26289.010.1-E_at −0.7591 0.75909546 11.18467 <1e−16  26289.010 NM_174858.1 AX988359.1 GENBANK_PATENT 1 81 3861.001.1-F_at −0.75842 0.75842235 11.16131 <1e−16  3861.001. NM_000526.3 BG677893.1 EST 1 82 1908.002.1-T_at −0.75841 0.75841175 11.16094 <1e−16  1908.002. NM_207032.1 NM_207033.1 REFSEQ 8 83 4629.007.1-C_at −0.75757 0.75757437 11.132 <1e−16  4629.007. NM_022844.1 AY520817.1 mRNA 16 84 1756.022.5-T_at −0.75733 0.75732729 11.12348 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 85 3815.002.4-B_at −0.75611 0.75610941 11.08167 <1e−16  3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 86 1756.022.2-B_at −0.75476 0.75476064 11.03568 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 87 1756.027.1-B_at −0.75441 0.75441365 11.0239 <1e−16  1756.027. NM_000109.2 S60971.1 mRNA 1 88 3852.008.2-T_at −0.75435 0.75434944 11.02172 <1e−16  3852.008. NM_000424.2 BG675837.1 EST 1 89 6422.001.1-E_at −0.75383 0.75383168 11.00419 <1e−16  6422.001. NM_003012.3 CQ850220.1 GENBANK_PATENT 2 90 3861.022.1-F_at −0.75247 0.75247162 10.95837 <1e−16  3861.022. NM_000526.3 BI085500.1 EST 1 91 4915.011.1-D_at −0.75125 0.75124983 10.91748 <1e−16  4915.011. NM_006180.3 CQ723929.1 GENBANK_PATENT 1 92 5288.001.1-F_at −0.75114 0.75113721 10.91373 <1e−16  5288.001. NM_004570.2 CQ720591.1 GENBANK_PATENT 1 93 3861.007.1-T_at −0.75024 0.75024416 10.88402 <1e−16  3861.007. NM_000526.3 BG682207.1 EST 11 94 3852.006.1-C_at −0.74966 0.74965968 10.86465 <1e−16  3852.006. NM_000424.2 BG679014.1 EST 1 95 9413.003.1-T_at −0.74954 0.74953975 10.86069 <1e−16  9413.003. NM_004816.2 BX641153.1 mRNA 10 96 3861.020.1-C_at −0.74922 0.74922185 10.85018 <1e−16  3861.020. NM_000526.3 BM018298.1 EST 1 97 1308.008.1-D_at −0.7468 0.746803 10.77082 <1e−16  1308.008. NM_130778.1 BE148646.1 EST 1 98 23336.001.1-T_at −0.74666 0.74665951 10.76614 <1e−16  23336.001 NM_145728.1 AJ697971.1 mRNA 1 99 3815.001.1-F_at −0.74657 0.74656536 10.76307 <1e−16  3815.001. NM_000222.1 CS237377.1 GENBANK_PATENT 1 100 1756.022.5-F_at −0.74654 0.74654247 10.76233 <1e−16  1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 101 79937.001.1-T_at −0.74608 0.74607796 10.74722 <1e−16  79937.001 NM_033655.2 AF333769.2 mRNA 1 102 4915.012.1-E_at −0.74575 0.74575052 10.73659 <1e−16  4915.012. NM_006180.3 CD103051.1 EST 1 103 3861.022.1-T_at −0.74356 0.74356005 10.66593 <1e−16  3861.022. NM_000526.3 BI085500.1 EST 1 104 26289.005.1-T_at −0.74355 0.74354601 10.66548 <1e−16  26289.005 NM_174858.1 BI546738.1 EST 1 105 3815.002.3-B_at −0.74306 0.74306109 10.64994 <1e−16  3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 106 4311.009.1-F_at −0.74287 0.74287019 10.64383 <1e−16  4311.009. NM_000902.2 A30431.1 GENBANK_PATENT 1 107 26289.006.1-T_at −0.74283 0.74282989 10.64255 <1e−16  26289.006 NM_174858.1 CN356131.1 EST 1 108 5288.003.1-F_at −0.74231 0.74231399 10.62608 <1e−16  5288.003. NM_004570.2 CQ721655.1 GENBANK_PATENT 1 109 4629.020.1-B_at −0.7423 0.74230371 10.62575 <1e−16  4629.020. NM_022844.1 BI819760.1 EST 1 110 26289.007.1-D_at −0.74169 0.74168883 10.60617 <1e−16  26289.007 NM_174858.1 DA259560.1 EST 1 111 3815.002.1-B_at −0.74167 0.74166962 10.60556 <1e−16  3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 112 26289.004.1-T_at −0.74153 0.74153045 10.60114 <1e−16  26289.004 NM_174858.1 NM_012093.2 REFSEQ 7 113 79192.002.2-T_at −0.74131 0.74131399 10.59427 <1e−16  79192.002 NM_024337.3 CQ731489.1 GENBANK_PATENT 1 114 4638.006.1-D_at −0.74126 0.74125872 10.59252 <1e−16  4638.006. NM_053025.2 DR005817.1 EST 2 115 3084.008.1-F_at −0.74052 0.74051659 10.56902 <1e−16  3084.008. NM_013957.1 CQ733299.1 GENBANK_PATENT 1 116 4311.001.2-T_at −0.73955 0.73955496 10.5387 <1e−16  4311.001. NM_000902.2 CB988534.1 EST 1 117 3815.002.1-D_at −0.73931 0.73930643 10.53089 <1e−16  3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 118 4629.020.1-T_at −0.73906 0.73905518 10.523 <1e−16  4629.020. NM_022844.1 BI819760.1 EST 1 119 1756.026.1-B_at −0.739 0.73899721 10.52119 <1e−16  1756.026. NM_000109.2 M63075.1 mRNA 1 120 3852.022.1-T_at −0.73857 0.73856714 10.50771 <1e−16  3852.022. NM_000424.2 BP226135.1 EST 1 121 4629.015.1-D_at −0.73849 0.73848689 10.5052 <1e−16  4629.015. NM_022844.1 DB284318.1 EST 1 122 26289.007.1-C_at −0.73826 0.73825579 10.49797 <1e−16  26289.007 NM_174858.1 DA259560.1 EST 1 123 23194.003.1-C_at −0.73638 0.73638084 10.43964 <1e−16  23194.003 NM_012304.3 BP290286.1 EST 1 124 3815.002.1-F_at −0.73534 0.73534271 10.40757 <1e−16  3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 125 26289.007.1-T_at −0.7346 0.73459701 10.38463 <1e−16  26289.007 NM_174858.1 DA259560.1 EST 1 126 65983.009.1-B_at −0.73458 0.73457702 10.38401 <1e−16  65983.009 NM_023927.1 CQ413222.1 GENBANK_PATENT 2 127 23336.001.1-F_at −0.73393 0.73392505 10.36403 <1e−16  23336.001 NM_145728.1 AJ697971.1 mRNA 1 128 1410.007.2-B_at −0.73346 0.73346173 10.34986 <1e−16  1410.007. NM_001885.1 BI548180.1 EST 1 129 1756.029.1-F_at −0.73299 0.73298982 10.33546 <1e−16  1756.029. NM_000109.2 BI551231.1 EST 1 130 7373.003.6-C_at −0.73258 0.73257952 10.32297 <1e−16  7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 131 10010.002.1-E_at −0.7322 0.73219822 10.31139 <1e−16  10010.002 NM_004180.2 CF242863.1 EST 1 132 59.026.1-B_at −0.73215 0.73215036 10.30993 <1e−16  59.026.1 — — — — 133 4915.011.1-F_at −0.73192 0.73191927 10.30292 <1e−16  4915.011. NM_006180.3 CQ723929.1 GENBANK_PATENT 1 134 3872.007.1-D_at −0.73192 0.73191502 10.30279 <1e−16  3872.007. NM_000422.1 BU155457.1 EST 1 135 26289.002.1-D_at −0.73171 0.73171045 10.2966 <1e−16  26289.002 NM_174858.1 BF966377.1 EST 1 136 84668.002.1-C_at −0.73162 0.73162167 10.29391 <1e−16  84668.002 NM_032581.2 AL833296.1 mRNA 20 137 1756.002.2-T_at −0.73157 0.73156873 10.2923 <1e−16  1756.002. NM_000109.2 NM_004016.1 REFSEQ 30 138 57447.033.1-C_at −0.73085 0.73084864 10.27055 <1e−16  57447.033 NM_201535.1 DA135222.1 EST 1 139 26289.009.1-E_at −0.7304 0.73039812 10.25697 <1e−16  26289.009 NM_174858.1 AA393277.1 EST 1 140 3872.006.1-F_at −0.73024 0.73023988 10.25221 <1e−16  3872.006. NM_000422.1 BM017443.1 EST 1 141 3861.022.1-D_at −0.72983 0.72982952 10.23988 <1e−16  3861.022. NM_000526.3 BI085500.1 EST 1 142 3861.020.1-B_at −0.72921 0.72920518 10.22116 <1e−16  3861.020. NM_000526.3 BM018298.1 EST 1 143 667.021.1-B_at −0.72908 0.72907922 10.21739 <1e−16  667.021.1 NM_183380.1 DB134537.1 EST 1 144 57447.027.1-F_at −0.72812 0.72812186 10.18881 <1e−16  57447.027 NM_201535.1 BM810623.1 EST 9 145 56477.001.1-D_at −0.72775 0.72774687 10.17766 <1e−16  56477.001 NM_148672.1 NM_019846.3 REFSEQ 13 146 26289.008.1-F_at −0.72745 0.72744814 10.16878 <1e−16  26289.008 NM_174858.1 AV721097.1 EST 1 147 59.024.2-D_at −0.72739 0.72738851 10.16701 <1e−16  59.024.2 — — — — 148 4629.005.1-T_at −0.72738 0.7273826 10.16683 <1e−16  4629.005. NM_022844.1 CB963138.1 EST 3 149 3815.002.1-T_at −0.72727 0.72727235 10.16356 <1e−16  3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 150 23336.001.1-B_at −0.72692 0.7269191 10.15309 <1e−16  23336.001 NM_145728.1 AJ697971.1 mRNA 1 151 3084.004.2-F_at −0.72617 0.72616697 10.13085 1E−16 3084.004. NM_013957.1 NM_013964.1 REFSEQ 5 152 27122.014.2-T_at −0.72585 0.72585166 10.12156 1E−16 27122.014 NM_013253.4 DA180412.1 EST 1 153 26289.008.1-C_at −0.72537 0.72537026 10.10738 1E−16 26289.008 NM_174858.1 AV721097.1 EST 1 154 286887.003.2-B −0.72458 0.72457637 10.08408 1E−16 286887.00 NM_173086.2 BG876719.1 EST 1 155 4629.005.1-F_at −0.72437 0.72437411 10.07816 1E−16 4629.005. NM_022844.1 CB963138.1 EST 3 156 3872.009.1-T_at −0.72329 0.72328551 10.04637 1E−16 3872.009. NM_000422.1 BX647923.1 mRNA 91 157 59.014.2-D_at −0.72287 0.72287431 10.0344 1E−16 59.014.2 NM_001613.1 CB962422.1 EST 1 158 403340.001.2-B −0.72269 0.72269253 10.02912 1E−16 403340.00 NM_203481.1 DA145754.1 EST 1 159 3852.014.1-F_at −0.72194 0.72194027 10.0073 1E−16 3852.014. NM_000424.2 BF826002.1 EST 1 160 27122.001.1-T_at −0.72089 0.72088962 9.976959 1E−16 27122.001 NM_013253.4 BP290952.1 EST 1 161 3815.002.3-T_at −0.72077 0.72076825 9.973463 1E−16 3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 162 3852.008.1-E_at −0.72074 0.72073551 9.97252 1E−16 3852.008. NM_000424.2 BG675837.1 EST 1 163 26289.012.1-T_at −0.72072 0.72072375 9.972181 1E−16 26289.012 NM_174858.1 BG189938.1 EST 1 164 26289.007.1-F_at −0.72026 0.72026202 9.958901 1E−16 26289.007 NM_174858.1 DA259560.1 EST 1 165 4638.006.1-T_at −0.72019 0.72019094 9.956859 1E−16 4638.006. NM_053025.2 DR005817.1 EST 2 166 8626.005.1-B_at −0.71997 0.71997497 9.950658 1E−16 8626.005. NM_003722.3 AB042841.1 mRNA 1 167 3815.002.4-T_at −0.71955 0.71955195 9.938531 1E−16 3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 168 84668.004.1-F_at −0.71918 0.71917508 9.927746 1E−16 84668.004 NM_032581.2 AL597549.1 EST 1 169 3872.007.1-F_at −0.71916 0.71915759 9.927246 1E−16 3872.007. NM_000422.1 BU155457.1 EST 1 170 57447.031.1-E_at −0.7189 0.71889801 9.919829 2E−16 57447.031 NM_201535.1 AI272253.1 EST 1 171 3084.012.3-T_at −0.71856 0.71855665 9.910088 2E−16 3084.012. NM_013957.1 U02325.1 mRNA 1 172 3852.005.1-T_at −0.71827 0.71827136 9.901958 2E−16 3852.005. NM_000424.2 R47851.1 EST 1 173 84417.001.2-T_at −0.71816 0.71816117 9.898821 2E−16 84417.001 NM_032411.1 BI561114.1 EST 1 174 3866.003.2-T_at −0.71746 0.71745931 9.878874 2E−16 3866.003. NM_002275.2 AK090604.1 mRNA 22 175 3866.008.1-C_at −0.71716 0.71715783 9.870325 2E−16 3866.008. NM_002275.2 BI771363.1 EST 1 176 3852.009.1-F_at −0.71671 0.71671024 9.857654 2E−16 3852.009. NM_000424.2 BQ378037.1 EST 1 177 59.015.1-B_at −0.71663 0.7166277 9.85532 2E−16 59.015.1 NM_001613.1 BP372009.1 EST 1 178 79937.002.1-F_at −0.71652 0.71651832 9.852229 2E−16 79937.002 NM_033655.2 AB051501.2 mRNA 9 179 7153.002.6-F_at 0.716462 0.71646227 9.850645 2E−16 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 180 4281.010.1-B_at −0.71619 0.71619361 9.84306 2E−16 4281.010. NM_033290.1 AY540016.1 mRNA 1 181 59.008.1-B_at −0.71578 0.7157817 9.831448 2E−16 59.008.1 NM_001613.1 BP373197.1 EST 1 182 1264.007.1-T_at −0.71577 0.71576716 9.831038 2E−16 1264.007. NM_001299.4 CX761868.1 EST 1 183 3868.004.1-T_at −0.7156 0.71560057 9.826348 2E−16 3868.004. NM_005557.2 BM045170.1 EST 1 184 3084.002.1-F_at −0.71513 0.71512815 9.813066 3E−16 3084.002. NM_013957.1 CN603657.1 EST 1 185 5137.004.2-T_at −0.71508 0.71508204 9.811771 3E−16 5137.004. NM_005020.1 BP222698.1 EST 1 186 4629.022.1-T_at −0.71428 0.71427853 9.789249 3E−16 4629.022. NM_022844.1 AX898971.1 GENBANK_PATENT 1 187 4915.011.1-T_at −0.71337 0.71336654 9.763782 3E−16 4915.011. NM_006180.3 CQ723929.1 GENBANK_PATENT 1 188 3852.013.1-E_at −0.71333 0.71332619 9.762657 3E−16 3852.013. NM_000424.2 BG682634.1 EST 1 189 59.012.2-T_at −0.71189 0.71189085 9.722787 4E−16 59.012.2 NM_001613.1 AL546033.3 EST 1 190 59.015.1-F_at −0.71184 0.71184354 9.721477 4E−16 59.015.1 NM_001613.1 BP372009.1 EST 1 191 4638.006.2-T_at −0.7112 0.71119714 9.703606 4E−16 4638.006. NM_053025.2 DR005817.1 EST 2 192 23336.002.1-B_at −0.7108 0.71079772 9.692588 6E−16 23336.002 NM_145728.1 NM_015286.4 REFSEQ 6 193 3868.005.1-C_at −0.70987 0.7098711 9.6671 6E−16 3868.005. NM_005557.2 BG682632.1 EST 1 194 3866.011.2-D_at −0.7087 0.70870117 9.635065 7E−16 3866.011. NM_002275.2 BQ218433.1 EST 1 195 56477.001.1-T_at −0.70868 0.70868235 9.634551 7E−16 56477.001 NM_148672.1 NM_019846.3 REFSEQ 13 196 3815.001.1-T_at −0.70825 0.70824726 9.622678 7E−16 3815.001. NM_000222.1 CS237377.1 GENBANK_PATENT 1 197 4311.001.1-T_at −0.70821 0.70820529 9.621535 7E−16 4311.001. NM_000902.2 CB988534.1 EST 1 198 1264.003.1-D_at −0.70785 0.70785219 9.611918 8E−16 1264.003. NM_001299.4 CV811526.1 EST 1 199 59.031.1-T_at −0.70756 0.70755684 9.603885 8E−16 59.031.1 NM_001613.1 BG197213.1 EST 19 200 57447.030.1-B_at −0.70751 0.70750665 9.60252 8E−16 57447.030 NM_201535.1 BM783465.1 EST 5 201 1410.003.2-B_at −0.70746 0.70745636 9.601154 8E−16 1410.003. NM_001885.1 AX899079.1 GENBANK_PATENT 1 202 3866.009.2-D_at −0.70722 0.70721526 9.594607 8E−16 3866.009. NM_002275.2 BI457146.1 EST 1 203 59.026.1-T_at −0.70717 0.70717265 9.59345 8E−16 59.026.1 — — — — 204 440421.001.1-T −0.70711 0.70711453 9.591873 8E−16 440421.00 XM_496202.2 XM_934894.1 REFSEQ 2 205 1756.022.4-D_at −0.70675 0.70675086 9.582014 9E−16 1756.022. NM_000109.2 CQ714747.1 GENBANK_PATENT 1 206 65983.009.1-D_at −0.7066 0.70660056 9.577944 9E−16 65983.009 NM_023927.1 CQ413222.1 GENBANK_PATENT 2 207 57447.041.1-T_at −0.70624 0.70624401 9.5683 9E−16 57447.041 NM_201535.1 DA295124.1 EST 1 208 3872.010.2-D_at −0.70603 0.7060339 9.562622 1E−15 3872.010. NM_000422.1 BM008795.1 EST 1 209 4629.006.2-T_at −0.70601 0.70600879 9.561944 1E−15 4629.006. NM_022844.1 DB079784.1 EST 1 210 3861.018.1-F_at −0.70592 0.70592127 9.559582 1E−15 3861.018. NM_000526.3 BM019687.1 EST 1 211 3815.002.2-T_at −0.70576 0.70576231 9.555292 1E−15 3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 212 3866.012.2-D_at −0.70556 0.70555782 9.549778 1E−15 3866.012. NM_002275.2 BI772438.1 EST 1 213 57447.021.1-D_at −0.70548 0.70548085 9.547704 1E−15 57447.021 NM_201535.1 BQ954948.1 EST 28 214 59.015.1-T_at −0.70494 0.7049442 9.533261 1E−15 59.015.1 NM_001613.1 BP372009.1 EST 1 215 8626.007.1-F_at −0.70484 0.70483534 9.530336 1E−15 8626.007. NM_003722.3 BG698723.1 EST 1 216 5288.001.1-B_at −0.70452 0.70452172 9.521914 1E−15 5288.001. NM_004570.2 CQ720591.1 GENBANK_PATENT 1 217 72.001.1-B_at −0.70441 0.70440953 9.518904 1E−15 72.001.1 NM_001615.3 BP330025.1 EST 1 218 3866.006.2-D_at −0.70383 0.70382789 9.503322 1E−15 3866.006. NM_002275.2 BQ641523.1 EST 1 219 3852.004.1-T_at −0.70371 0.70371224 9.500228 1E−15 3852.004. NM_000424.2 BE715131.1 EST 1 220 4629.016.1-F_at −0.70364 0.70363752 9.49823 1E−15 4629.016. NM_022844.1 DB289769.1 EST 1 221 4629.007.1-T_at −0.70359 0.70358925 9.49694 1E−15 4629.007. NM_022844.1 AY520817.1 mRNA 16 222 65983.008.1-T_at −0.70354 0.70353523 9.495496 1E−15 65983.008 NM_023927.1 BI547735.1 EST 2 223 65983.013.1-F_at −0.70278 0.7027824 9.475409 1E−15 65983.013 NM_023927.1 AA610396.1 EST 1 224 3084.004.1-F_at −0.70205 0.70204717 9.455852 2E−15 3084.004. NM_013957.1 NM_013964.1 REFSEQ 5 225 27122.007.1-F_at −0.70181 0.70180898 9.449529 2E−15 27122.007 NM_013253.4 DA177251.1 EST 1 226 3866.008.1-D_at −0.70143 0.70142639 9.439386 2E−15 3866.008. NM_002275.2 BI771363.1 EST 1 227 26289.009.1-T_at −0.70109 0.70108634 9.430384 2E−15 26289.009 NM_174858.1 AA393277.1 EST 1 228 59.009.1-B_at −0.70065 0.7006532 9.418936 2E−15 59.009.1 NM_001613.1 CD299238.1 EST 1 229 4629.010.1-D_at −0.70044 0.70044198 9.413361 2E−15 4629.010. NM_022844.1 AI285326.1 EST 1 230 59.023.1-B_at −0.70011 0.70010609 9.404505 2E−15 59.023.1 NM_001613.1 DB248573.1 EST 1 231 26289.002.1-F_at −0.69973 0.6997339 9.394706 2E−15 26289.002 NM_174858.1 BF966377.1 EST 1 232 1908.001.1-T_at −0.69949 0.69948609 9.388191 2E−15 1908.001. NM_207032.1 BC008876.2 mRNA 3 233 4915.008.1-F_at −0.69917 0.69916784 9.379833 2E−15 4915.008. NM_006180.3 NM_001007097 REFSEQ 4 234 23336.002.1-T_at −0.69904 0.69903724 9.376406 2E−15 23336.002 NM_145728.1 NM_015286.4 REFSEQ 6 235 3861.008.1-C_at −0.69903 0.69902539 9.376095 2E−15 3861.008. NM_000526.3 BE184532.1 EST 1 236 3861.008.1-D_at −0.69889 0.69889457 9.372664 2E−15 3861.008. NM_000526.3 BE184532.1 EST 1 237 57447.035.1-E_at −0.69855 0.69855253 9.363704 2E−15 57447.035 NM_201535.1 BQ636638.1 EST 1 238 3861.018.1-C_at −0.69848 0.69848178 9.361852 3E−15 3861.018. NM_000526.3 BM019687.1 EST 1 239 1308.003.1-B_at −0.69839 0.69838688 9.359369 3E−15 1308.003. NM_130778.1 NM_000494.2 REFSEQ 19 240 667.022.1-B_at −0.69713 0.69712975 9.326564 3E−15 667.022.1 NM_183380.1 AX683196.1 GENBANK_PATENT 1 241 3866.011.2-T_at −0.69701 0.69700959 9.323438 3E−15 3866.011. NM_002275.2 BQ218433.1 EST 1 242 2115.001.2-F_at −0.69674 0.69674446 9.316544 3E−15 2115.001. NM_004956.3 X87175.1 mRNA 1 243 3866.011.2-B_at −0.69651 0.69651246 9.310518 3E−15 3866.011. NM_002275.2 BQ218433.1 EST 1 244 26289.010.1-T_at −0.69627 0.69627463 9.304346 3E−15 26289.010 NM_174858.1 AX988359.1 GENBANK_PATENT 1 245 27303.004.1-E_at −0.69571 0.69571431 9.28983 4E−15 27303.004 NM_001003793. BQ876639.1 EST 1 246 59.003.1-B_at −0.69503 0.69503447 9.27226 4E−15 59.003.1 NM_001613.1 DD218797.1 GENBANK_PATENT 1 247 4311.009.1-C_at −0.69487 0.69486903 9.267992 4E−15 4311.009. NM_000902.2 A30431.1 GENBANK_PATENT 1 248 7373.003.6-B_at −0.69405 0.69404745 9.246838 4E−15 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 249 65983.004.1-T_at −0.69339 0.69339166 9.230003 5E−15 65983.004 NM_023927.1 BP262020.1 EST 1 250 26289.013.1-D_at −0.69304 0.69304425 9.221102 5E−15 26289.013 NM_174858.1 CK024190.1 EST 1 251 3866.004.1-F_at −0.69262 0.6926248 9.210372 5E−15 3866.004. NM_002275.2 BC110649.1 mRNA 1 252 56477.001.1-F_at −0.69247 0.69247193 9.206466 5E−15 56477.001 NM_148672.1 NM_019846.3 REFSEQ 13 253 57447.037.1-F_at −0.69228 0.6922756 9.201453 5E−15 57447.037 NM_201535.1 BF793156.1 EST 1 254 59.022.2-T_at −0.69208 0.69207912 9.19644 6E−15 59.022.2 — — — — 255 147495.008.1-F −0.69208 0.69207819 9.196417 6E−15 147495.00 NM_153000.3 BU541433.1 EST 1 256 2.018.1-T_at −0.69207 0.69207481 9.196331 6E−15 2.018.1 NM_000014.4 DB090657.1 EST 1 257 140807.003.1-E −0.69207 0.69207171 9.196251 6E−15 140807.00 NM_080747.1 DB022590.1 EST 1 258 65983.009.1-T_at −0.69206 0.69205534 9.195834 6E−15 65983.009 NM_023927.1 CQ413222.1 GENBANK_PATENT 2 259 84668.002.1-F_at −0.69156 0.69155609 9.183115 6E−15 84668.002 NM_032581.2 AL833296.1 mRNA 20 260 3872.007.1-C_at −0.69153 0.69153411 9.182556 6E−15 3872.007. NM_000422.1 BU155457.1 EST 1 261 2115.008.1-T_at −0.69097 0.6909716 9.168257 6E−15 2115.008. NM_004956.3 BC045776.1 mRNA 3 262 65983.004.2-T_at −0.69096 0.69095787 9.167908 6E−15 65983.004 NM_023927.1 BP262020.1 EST 1 263 57447.034.1-D_at −0.69053 0.69052533 9.156935 7E−15 57447.034 NM_201535.1 BC011240.1 mRNA 1 264 3866.001.1-F_at −0.69016 0.69016212 9.147735 7E−15 3866.001. NM_002275.2 CQ733235.1 GENBANK_PATENT 23 265 3866.008.1-T_at −0.69014 0.69014281 9.147247 7E−15 3866.008. NM_002275.2 BI771363.1 EST 1 266 1959.003.1-C_at −0.68985 0.68984796 9.139789 7E−15 1959.003. NM_000399.2 BX414563.2 EST 3 267 389432.002.1-T −0.68963 0.6896308 9.134301 8E−15 389432.00 NM_001030060. CQ751492.1 GENBANK_PATENT 1 268 389734.001.1-T −0.68953 0.68953203 9.131807 8E−15 389734.00 XM_928572.1 NM_033655.2 REFSEQ 1 269 3855.001.2-D_at −0.68928 0.68928425 9.125555 8E−15 3855.001. NM_005556.3 BM754696.1 EST 1 270 3866.003.1-T_at −0.68911 0.68910803 9.121111 8E−15 3866.003. NM_002275.2 AK090604.1 mRNA 22 271 3084.006.1-F_at −0.689 0.68900076 9.118408 8E−15 3084.006. NM_013957.1 NM_013956.1 REFSEQ 3 272 4915.008.1-B_at −0.68884 0.68884477 9.114479 8E−15 4915.008. NM_006180.3 NM_001007097 REFSEQ 4 273 2115.011.1-T_at −0.68881 0.68880926 9.113585 8E−15 2115.011. NM_004956.3 DB093597.1 EST 1 274 65983.005.1-T_at −0.68876 0.68875602 9.112245 8E−15 65983.005 NM_023927.1 CQ471280.1 GENBANK_PATENT 6 275 84668.004.1-T_at −0.68808 0.68807773 9.095195 9E−15 84668.004 NM_032581.2 AL597549.1 EST 1 276 59.015.2-T_at −0.68802 0.68801589 9.093643 9E−15 59.015.2 NM_001613.1 BP372009.1 EST 1 277 2119.006.1-B_at −0.6878 0.687801 9.088252 9E−15 2119.006. NM_004454.1 DB094869.1 EST 1 278 4638.006.2-F_at −0.68764 0.6876412 9.084246 1E−14 4638.006. NM_053025.2 DR005817.1 EST 2 279 3866.007.2-D_at −0.687 0.68699646 9.068108 1E−14 3866.007. NM_002275.2 BM548942.1 EST 1 280 59.014.1-T_at −0.68691 0.68691236 9.066007 1E−14 59.014.1 NM_001613.1 CB962422.1 EST 1 281 3866.001.2-F_at −0.68681 0.68680934 9.063433 1E−14 3866.001. NM_002275.2 CQ733235.1 GENBANK_PATENT 23 282 1308.008.1-B_at −0.68652 0.68652289 9.056281 1E−14 1308.008. NM_130778.1 BE148646.1 EST 1 283 59.026.1-F_at −0.68647 0.68647292 9.055034 1E−14 59.026.1 — — — — 284 3866.013.1-T_at −0.68626 0.68625953 9.049713 1E−14 3866.013. NM_002275.2 BI769443.1 EST 1 285 1264.007.1-F_at −0.68577 0.68577484 9.037643 1E−14 1264.007. NM_001299.4 CX761868.1 EST 1 286 3866.007.2-T_at −0.68566 0.68566296 9.034861 1E−14 3866.007. NM_002275.2 BM548942.1 EST 1 287 27122.013.1-T_at −0.68541 0.68541178 9.028617 1E−14 27122.013 NM_013253.4 DR155720.1 EST 1 288 27122.006.2-T_at −0.68531 0.68531032 9.026097 1E−14 27122.006 NM_013253.4 DA171350.1 EST 1 289 3866.006.2-T_at −0.68509 0.68508881 9.020598 1E−14 3866.006. NM_002275.2 BQ641523.1 EST 1 290 3866.009.2-T_at −0.68506 0.68506091 9.019906 1E−14 3866.009. NM_002275.2 BI457146.1 EST 1 291 4240.004.1-D_at −0.68504 0.68503667 9.019305 1E−14 4240.004. NM_005928.1 BC003610.2 mRNA 448 292 3866.010.1-C_at −0.68501 0.68500991 9.018641 1E−14 3866.010. NM_002275.2 BM045201.1 EST 1 293 3866.009.2-B_at −0.68464 0.68464309 9.009548 1E−14 3866.009. NM_002275.2 BI457146.1 EST 1 294 3866.009.1-T_at −0.68457 0.68456652 9.007652 1E−14 3866.009. NM_002275.2 BI457146.1 EST 1 295 4629.006.1-T_at −0.68451 0.68450911 9.00623 1E−14 4629.006. NM_022844.1 DB079784.1 EST 1 296 7018.029.1-B_at −0.68388 0.68388329 8.990755 2E−14 7018.029. NM_001063.2 AV656085.1 EST 1 297 1410.002.2-B_at −0.68375 0.6837454 8.987351 2E−14 1410.002. NM_001885.1 AX899073.1 GENBANK_PATENT 4 298 3866.012.1-T_at −0.68307 0.68306583 8.970598 2E−14 3866.012. NM_002275.2 BI772438.1 EST 1 299 59.034.2-D_at −0.68305 0.68305272 8.970275 2E−14 59.034.2 — — — — 300 27122.019.1-F_at −0.68293 0.68293177 8.967298 2E−14 27122.019 NM_013253.4 CX758435.1 EST 1 301 5156.001.1-T_at −0.68292 0.6829222 8.967063 2E−14 5156.001. NM_006206.3 BC015186.1 mRNA 1 302 389734.001.2-T −0.68274 0.68273641 8.962493 2E−14 389734.00 XM_928572.1 NM_033655.2 REFSEQ 1 303 27122.014.1-T_at −0.68257 0.68256552 8.958292 2E−14 27122.014 NM_013253.4 DA180412.1 EST 1 304 57447.010.3-T_at −0.68236 0.68236044 8.953255 2E−14 57447.010 NM_201535.1 BP349691.1 EST 1 305 358.018.1-F_at −0.68232 0.68232244 8.952322 2E−14 358.018.1 NM_198098.1 BI765065.1 EST 1 306 3866.006.1-T_at −0.68218 0.6821773 8.948759 2E−14 3866.006. NM_002275.2 BQ641523.1 EST 1 307 7373.001.1-T_at −0.68199 0.68198548 8.944055 2E−14 7373.001. NM_021110.1 DB089175.1 EST 1 308 26289.012.1-B_at −0.68184 0.68184048 8.940501 2E−14 26289.012 NM_174858.1 BG189938.1 EST 1 309 57447.029.1-T_at −0.68178 0.68178369 8.939109 2E−14 57447.029 NM_201535.1 BX354120.2 EST 6 310 358.018.1-B_at −0.68156 0.68155712 8.933561 2E−14 358.018.1 NM_198098.1 BI765065.1 EST 1 311 79068.010.1-B_at −0.68149 0.68149173 8.93196 2E−14 79068.010 XM_051200.8 DA647247.1 EST 1 312 59.024.1-B_at −0.68126 0.68126043 8.926302 2E−14 59.024.1 — — — — 313 59.004.1-B_at −0.68117 0.68116935 8.924076 2E−14 59.004.1 NM_001613.1 CQ696293.1 GENBANK_PATENT 1 314 3866.011.1-T_at −0.68101 0.68100958 8.920172 2E−14 3866.011. NM_002275.2 BQ218433.1 EST 1 315 3866.013.1-E_at −0.68096 0.68096121 8.91899 2E−14 3866.013. NM_002275.2 BI769443.1 EST 1 316 3866.010.1-D_at −0.68032 0.68032145 8.903385 2E−14 3866.010. NM_002275.2 BM045201.1 EST 1 317 59.004.1-T_at −0.68016 0.68016229 8.899508 2E−14 59.004.1 NM_001613.1 CQ696293.1 GENBANK_PATENT 1 318 2115.012.1-T_at −0.68003 0.68003217 8.896341 2E−14 2115.012. NM_004956.3 DA407403.1 EST 1 319 2.018.1-D_at −0.68003 0.68003048 8.8963 2E−14 2.018.1 NM_000014.4 DB090657.1 EST 1 320 2115.007.1-T_at −0.67992 0.67991611 8.893517 2E−14 2115.007. NM_004956.3 DA189670.1 EST 1 321 59.040.1-T_at −0.67978 0.67977663 8.890125 2E−14 59.040.1 NM_001613.1 EH_001613.6 PREDICTED 1 322 130497.001.2-T −0.67974 0.67974133 8.889267 2E−14 130497.00 NM_145260.2 BP316395.1 EST 1 323 140885.014.1-T −0.67971 0.67971161 8.888544 2E−14 140885.01 NM_080792.2 DR423079.1 EST 1 324 3866.005.1-F_at −0.6797 0.67970122 8.888292 2E−14 3866.005. NM_002275.2 AL832226.1 mRNA 37 325 7373.003.3-F_at −0.67961 0.67961087 8.886096 3E−14 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 326 8404.028.1-F_at −0.67957 0.67957039 8.885112 3E−14 8404.028. NM_004684.2 CQ727530.1 GENBANK_PATENT 1 327 3860.007.1-D_at −0.67955 0.67954786 8.884565 3E−14 3860.007. NM_153490.1 DB256579.1 EST 1 328 4638.003.1-C_at −0.67882 0.678822 8.866957 3E−14 4638.003. NM_053025.2 BP289609.1 EST 2 329 3872.009.1-E_at −0.67861 0.67861088 8.861844 3E−14 3872.009. NM_000422.1 BX647923.1 mRNA 91 330 59.004.2-T_at −0.67859 0.67859272 8.861405 3E−14 59.004.2 NM_001613.1 CQ696293.1 GENBANK_PATENT 1 331 3872.006.1-C_at −0.67843 0.67842819 8.857424 3E−14 3872.006. NM_000422.1 BM017443.1 EST 1 332 3866.005.1-C_at −0.67822 0.67822035 8.852398 3E−14 3866.005. NM_002275.2 AL832226.1 mRNA 37 333 25925.008.1-T_at −0.67797 0.6779714 8.846384 3E−14 25925.008 NM_015461.1 DA093254.1 EST 1 334 23650.011.2-T_at −0.67792 0.67792361 8.84523 3E−14 23650.011 NM_058193.1 NM_012101.2 REFSEQ 11 335 3866.012.2-T_at −0.67755 0.67754608 8.836122 3E−14 3866.012. NM_002275.2 BI772438.1 EST 1 336 3852.017.1-D_at −0.6775 0.67750467 8.835124 3E−14 3852.017. NM_000424.2 CV575305.1 EST 1 337 4915.005.1-T_at −0.67735 0.67734733 8.831332 3E−14 4915.005. NM_006180.3 BP348402.1 EST 1 338 4638.003.1-B_at −0.67707 0.67706981 8.82465 3E−14 4638.003. NM_053025.2 BP289609.1 EST 2 339 1756.003.1-B_at −0.67674 0.67673545 8.816608 4E−14 1756.003. NM_000109.2 AB208836.1 mRNA 1 340 4638.006.1-F_at −0.67651 0.6765092 8.811172 4E−14 4638.006. NM_053025.2 DR005817.1 EST 2 341 57447.035.1-F_at −0.67604 0.67604162 8.799953 4E−14 57447.035 NM_201535.1 BQ636638.1 EST 1 342 4638.014.1-T_at −0.67585 0.67584646 8.795276 4E−14 4638.014. NM_053025.2 NM_053027.2 REFSEQ 2 343 7373.003.4-T_at −0.67582 0.67582231 8.794697 4E−14 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 344 27122.014.2-D_at −0.67579 0.67578648 8.793839 4E−14 27122.014 NM_013253.4 DA180412.1 EST 1 345 3866.007.1-T_at −0.67504 0.67503748 8.775925 4E−14 3866.007. NM_002275.2 BM548942.1 EST 1 346 2707.002.1-E_at −0.67499 0.67498884 8.774763 4E−14 2707.002. NM_024009.2 DA669405.1 EST 4 347 59.024.1-T_at −0.67481 0.67480778 8.770441 4E−14 59.024.1 — — — — 348 23650.011.1-T_at −0.6747 0.67469739 8.767807 4E−14 23650.011 NM_058193.1 NM_012101.2 REFSEQ 11 349 4638.011.1-F_at −0.67462 0.67462378 8.766052 4E−14 4638.011. NM_053025.2 DB267860.1 EST 1 350 7373.002.1-F_at −0.67455 0.67455304 8.764365 5E−14 7373.002. NM_021110.1 BC036192.1 mRNA 2 351 3866.013.1-F_at −0.6745 0.6744968 8.763024 5E−14 3866.013. NM_002275.2 BI769443.1 EST 1 352 5608.002.1-T_at −0.67444 0.67443693 8.761597 5E−14 5608.002. NM_002758.2 DA427998.1 EST 1 353 3866.001.1-C_at −0.67411 0.67411218 8.753863 5E−14 3866.001. NM_002275.2 CQ733235.1 GENBANK_PATENT 23 354 1756.013.1-B_at −0.67402 0.67402382 8.75176 5E−14 1756.013. NM_000109.2 NM_004019.1 REFSEQ 2 355 2115.006.1-E_at −0.67381 0.67381491 8.746791 5E−14 2115.006. NM_004956.3 DA210177.1 EST 1 356 6376.001.2-F_at −0.67341 0.6734055 8.737064 5E−14 6376.001. NM_002996.3 AK223351.1 mRNA 48 357 3084.004.1-B_at −0.67338 0.67337698 8.736388 5E−14 3084.004. NM_013957.1 NM_013964.1 REFSEQ 5 358 3815.002.4-F_at −0.67334 0.67333838 8.735471 5E−14 3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 359 8404.002.1-D_at −0.6733 0.6733018 8.734603 5E−14 8404.002. NM_004684.2 BP383384.1 EST 1 360 1264.006.1-T_at −0.67319 0.67318534 8.73184 5E−14 1264.006. NM_001299.4 CN366945.1 EST 1 361 59.022.2-D_at −0.67316 0.67315986 8.731236 5E−14 59.022.2 — — — — 362 25925.001.1-T_at −0.67306 0.67306029 8.728874 5E−14 25925.001 NM_015461.1 BC032869.2 mRNA 19 363 4638.006.2-B_at −0.67278 0.67278344 8.722314 6E−14 4638.006. NM_053025.2 DR005817.1 EST 2 364 7373.003.5-B_at −0.67271 0.67270981 8.72057 6E−14 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 365 8404.035.1-B_at −0.6727 0.67269572 8.720236 6E−14 8404.035. NM_004684.2 BG716198.1 EST 1 366 59.012.1-T_at −0.67254 0.67254112 8.716577 6E−14 59.012.1 NM_001613.1 AL546033.3 EST 1 367 3852.017.1-T_at −0.67188 0.67188165 8.70099 6E−14 3852.017. NM_000424.2 CV575305.1 EST 1 368 3866.012.2-B_at −0.67185 0.67184565 8.70014 6E−14 3866.012. NM_002275.2 BI772438.1 EST 1 369 2.022.1-B_at −0.67169 0.67168628 8.69638 6E−14 2.022.1 NM_000014.4 BP343424.1 EST 1 370 27122.016.1-F_at −0.67125 0.67124955 8.686085 7E−14 27122.016 NM_013253.4 BQ962557.1 EST 1 371 4311.009.1-B_at −0.67109 0.67108684 8.682254 7E−14 4311.009. NM_000902.2 A30431.1 GENBANK_PATENT 1 372 59.031.2-T_at −0.67084 0.67084085 8.676467 7E−14 59.031.2 NM_001613.1 BG197213.1 EST 19 373 4311.009.1-T_at −0.67054 0.67053973 8.669389 7E−14 4311.009. NM_000902.2 A30431.1 GENBANK_PATENT 1 374 3866.006.2-B_at −0.67045 0.67044748 8.667223 7E−14 3866.006. NM_002275.2 BQ641523.1 EST 1 375 57447.025.2-T_at −0.67023 0.67022566 8.662016 7E−14 57447.025 NM_201535.1 DA646455.1 EST 2 376 1717.007.1-F_at −0.67014 0.67013656 8.659925 8E−14 1717.007. NM_001360.1 BX438503.2 EST 1 377 59.004.2-D_at −0.67008 0.67008376 8.658687 8E−14 59.004.2 NM_001613.1 CQ696293.1 GENBANK_PATENT 1 378 3866.007.2-B_at −0.66995 0.66994537 8.655442 8E−14 3866.007. NM_002275.2 BM548942.1 EST 1 379 3866.010.1-F_at −0.66945 0.66944797 8.643794 8E−14 3866.010. NM_002275.2 BM045201.1 EST 1 380 9768.004.1-D_at 0.669331 0.66933125 8.641063 8E−14 9768.004. NM_014736.4 BG506365.1 EST 2 381 3084.012.2-T_at −0.66928 0.66928297 8.639934 8E−14 3084.012. NM_013957.1 U02325.1 mRNA 1 382 1410.004.2-B_at −0.66925 0.66925228 8.639216 8E−14 1410.004. NM_001885.1 AX888027.1 GENBANK_PATENT 1 383 59.008.1-D_at −0.66919 0.66919054 8.637773 8E−14 59.008.1 NM_001613.1 BP373197.1 EST 1 384 57447.030.1-C_at −0.66908 0.66908366 8.635275 8E−14 57447.030 NM_201535.1 BM783465.1 EST 5 385 2327.002.1-D_at −0.66908 0.66907887 8.635163 8E−14 2327.002. NM_001460.2 CD684429.1 EST 1 386 1308.004.1-B_at −0.66865 0.66864754 8.625092 9E−14 1308.004. NM_130778.1 BE615666.1 EST 1 387 2568.005.2-B_at −0.66838 0.66838113 8.61888 9E−14 2568.005. NM_014211.1 AK055205.1 mRNA 11 388 2568.001.1-T_at −0.66811 0.66811257 8.612624 9E−14 2568.001. NM_014211.1 BX509618.1 EST 1 389 3084.004.2-T_at −0.66789 0.66788994 8.607442 1E−13 3084.004. NM_013957.1 NM_013964.1 REFSEQ 5 390 7373.003.4-B_at −0.66777 0.66776994 8.604651 1E−13 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 391 7153.002.2-D_at 0.667642 0.66764203 8.601677 1E−13 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 392 2893.006.2-T_at −0.66761 0.66760773 8.600879 1E−13 2893.006. NM_000829.1 BF669210.1 EST 1 393 3872.016.1-D_at −0.66759 0.66758641 8.600384 1E−13 3872.016. NM_000422.1 CB127430.1 EST 1 394 9413.006.1-F_at −0.6674 0.6674036 8.596137 1E−13 9413.006. NM_004816.2 BC021685.1 mRNA 2 395 59.023.2-B_at −0.66731 0.6673108 8.593982 1E−13 59.023.2 NM_001613.1 DB248573.1 EST 1 396 72.005.1-B_at −0.66711 0.66711142 8.589354 1E−13 72.005.1 NM_001615.3 CF130984.1 EST 20 397 4915.011.1-C_at −0.66689 0.66688915 8.5842 1E−13 4915.011. NM_006180.3 CQ723929.1 GENBANK_PATENT 1 398 27122.018.1-F_at −0.66662 0.6666247 8.578072 1E−13 27122.018 NM_013253.4 BG715341.1 EST 1 399 3852.006.1-B_at −0.66652 0.66652184 8.57569 1E−13 3852.006. NM_000424.2 BG679014.1 EST 1 400 4638.006.2-D_at −0.66649 0.66648584 8.574857 1E−13 4638.006. NM_053025.2 DR005817.1 EST 2 401 7153.005.1-E_at 0.666056 0.66605623 8.56492 1E−13 7153.005. NM_001067.2 DB061604.1 EST 1 402 7373.001.2-T_at −0.66587 0.66587031 8.560624 1E−13 7373.001. NM_021110.1 DB089175.1 EST 1 403 7018.026.1-B_at −0.66537 0.66537209 8.549127 1E−13 7018.026. NM_001063.2 BM690655.1 EST 1 404 7402.014.1-B_at −0.66525 0.66524627 8.546227 1E−13 7402.014. NM_007124.1 AL703969.1 EST 1 405 57447.010.3-D_at −0.66513 0.66513034 8.543556 1E−13 57447.010 NM_201535.1 BP349691.1 EST 1 406 140446.004.1-T −0.66502 0.66501858 8.540982 1E−13 140446.00 NM_058242.1 DB016079.1 EST 1 407 59.026.2-T_at −0.66495 0.66494798 8.539356 1E−13 59.026.2 — — — — 408 59.038.1-B_at −0.66494 0.66493959 8.539163 1E−13 59.038.1 NM_001613.1 EH_001613.2 PREDICTED 1 409 4240.009.1-C_at −0.66471 0.66470997 8.533879 1E−13 4240.009. NM_005928.1 BG829936.1 EST 2 410 57447.030.1-F_at −0.66468 0.66468295 8.533258 1E−13 57447.030 NM_201535.1 BM783465.1 EST 5 411 9768.004.1-B_at 0.664563 0.66456315 8.530503 1E−13 9768.004. NM_014736.4 BG506365.1 EST 2 412 57447.008.1-T_at −0.66453 0.66453368 8.529826 1E−13 57447.008 NM_201535.1 DB195772.1 EST 1 413 59.014.2-T_at −0.66423 0.66423397 8.52294 1E−13 59.014.2 NM_001613.1 CB962422.1 EST 1 414 4915.012.1-T_at −0.66407 0.6640741 8.51927 1E−13 4915.012. NM_006180.3 CD103051.1 EST 1 415 3866.004.1-T_at −0.66398 0.66397879 8.517083 1E−13 3866.004. NM_002275.2 BC110649.1 mRNA 1 416 2582.007.2-C_at −0.66357 0.66357028 8.507718 2E−13 2582.007. NM_001008216. AK057302.1 mRNA 32 417 7153.002.5-T_at 0.663259 0.66325931 8.500598 2E−13 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 418 4638.009.1-T_at −0.66296 0.66295877 8.493725 2E−13 4638.009. NM_053025.2 AX885051.1 GENBANK_PATENT 39 419 3861.023.1-T_at −0.66279 0.66279224 8.489919 2E−13 3861.023. NM_000526.3 BG676679.1 EST 1 420 5858.003.3-C_at −0.66243 0.66242627 8.481564 2E−13 5858.003. NM_002864.1 AX512279.1 GENBANK_PATENT 2 421 3861.020.1-F_at −0.66242 0.66241661 8.481344 2E−13 3861.020. NM_000526.3 BM018298.1 EST 1 422 147495.005.1-T −0.66232 0.66231598 8.479048 2E−13 147495.00 NM_153000.3 BI822892.1 EST 1 423 4638.006.2-C_at −0.66228 0.66227571 8.47813 2E−13 4638.006. NM_053025.2 DR005817.1 EST 2 424 1308.004.1-F_at −0.66213 0.66212634 8.474725 2E−13 1308.004. NM_130778.1 BE615666.1 EST 1 425 4915.004.1-F_at −0.66185 0.66184583 8.468335 2E−13 4915.004. NM_006180.3 NM_001018066 REFSEQ 28 426 3866.008.1-B_at −0.66173 0.66172906 8.465676 2E−13 3866.008. NM_002275.2 BI771363.1 EST 1 427 8626.002.1-E_at −0.66173 0.66172521 8.465589 2E−13 8626.002. NM_003722.3 AB016072.1 mRNA 16 428 1264.003.1-T_at −0.66156 0.66156109 8.461855 2E−13 1264.003. NM_001299.4 CV811526.1 EST 1 429 59.042.1-F_at −0.66151 0.66151227 8.460744 2E−13 59.042.1 NM_001613.1 EH_001613.8 PREDICTED 1 430 4833.004.1-C_at 0.661269 0.66126853 8.455204 2E−13 4833.004. NM_005009.2 BG478602.1 EST 8 431 2568.006.1-B_at −0.66106 0.661057 8.450399 2E−13 2568.006. NM_014211.1 CD385249.1 EST 1 432 57447.004.2-T_at −0.66103 0.66102604 8.449696 2E−13 57447.004 NM_201535.1 CD515320.1 EST 2 433 59.014.2-B_at −0.66085 0.66084763 8.445647 2E−13 59.014.2 NM_001613.1 CB962422.1 EST 1 434 3084.012.1-T_at −0.66068 0.66068046 8.441855 2E−13 3084.012. NM_013957.1 U02325.1 mRNA 1 435 27122.017.1-T_at −0.6605 0.66049978 8.43776 2E−13 27122.017 NM_013253.4 CB155251.1 EST 1 436 3852.012.2-T_at −0.66039 0.66039403 8.435364 2E−13 3852.012. NM_000424.2 CQ733668.1 GENBANK_PATENT 1 437 59.033.1-T_at −0.66029 0.66028879 8.43298 2E−13 59.033.1 — — — — 438 27122.002.1-C_at −0.66018 0.66018203 8.430563 2E−13 27122.002 NM_013253.4 AK098756.1 mRNA 1 439 3880.011.1-B_at −0.65981 0.65981353 8.422227 2E−13 3880.011. NM_002276.3 BP330400.1 EST 1 440 65983.013.1-T_at −0.65959 0.65958733 8.417116 2E−13 65983.013 NM_023927.1 AA610396.1 EST 1 441 3872.014.1-T_at −0.65949 0.65948987 8.414915 2E−13 3872.014. NM_000422.1 BG678436.1 EST 1 442 162605.001.4-C −0.65946 0.65945748 8.414184 2E−13 162605.00 NM_181535.2 CQ735954.1 GENBANK_PATENT 1 443 59.031.2-B_at −0.65937 0.65937317 8.41228 2E−13 59.031.2 NM_001613.1 BG197213.1 EST 19 444 3084.012.2-B_at −0.65926 0.65925637 8.409644 3E−13 3084.012. NM_013957.1 U02325.1 mRNA 1 445 5858.001.2-C_at −0.65925 0.65925226 8.409552 3E−13 5858.001. NM_002864.1 BC111756.1 mRNA 2 446 65983.010.1-T_at −0.65919 0.65918848 8.408113 3E−13 65983.010 NM_023927.1 DB261377.1 EST 1 447 7373.003.5-F_at −0.65893 0.65892789 8.402237 3E−13 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 448 3866.010.1-T_at −0.65871 0.65871193 8.397372 3E−13 3866.010. NM_002275.2 BM045201.1 EST 1 449 8404.005.1-B_at −0.65871 0.65870759 8.397274 3E−13 8404.005. NM_004684.2 DA763956.1 EST 1 450 3866.005.1-T_at −0.65866 0.65866359 8.396284 3E−13 3866.005. NM_002275.2 AL832226.1 mRNA 37 451 59.003.1-F_at −0.65865 0.65864902 8.395956 3E−13 59.003.1 NM_001613.1 DD218797.1 GENBANK_PATENT 1 452 7153.002.5-F_at 0.658561 0.65856119 8.393979 3E−13 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 453 2487.001.1-T_at −0.65846 0.65846487 8.391811 3E−13 2487.001. NM_001463.2 CS141780.1 GENBANK_PATENT 7 454 3866.010.1-B_at −0.6577 0.65770261 8.374683 3E−13 3866.010. NM_002275.2 BM045201.1 EST 1 455 147495.009.1-T −0.65745 0.65745477 8.369124 3E−13 147495.00 NM_153000.3 CX164031.1 EST 1 456 65983.003.2-T_at −0.65736 0.65735504 8.366888 3E−13 65983.003 NM_023927.1 BP292708.1 EST 1 457 59.040.1-D_at −0.65731 0.65731134 8.365909 3E−13 59.040.1 NM_001613.1 EH_001613.6 PREDICTED 1 458 59.024.2-T_at −0.6568 0.65679913 8.35444 3E−13 59.024.2 — — — — 459 1717.009.2-B_at −0.65673 0.65673229 8.352945 3E−13 1717.009. NM_001360.1 DB170498.1 EST 1 460 1756.027.1-F_at −0.65672 0.6567193 8.352655 3E−13 1756.027. NM_000109.2 S60971.1 mRNA 1 461 59.042.1-B_at −0.65672 0.65671619 8.352585 3E−13 59.042.1 NM_001613.1 EH_001613.8 PREDICTED 1 462 7153.002.5-D_at 0.656687 0.65668727 8.351939 3E−13 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 463 57447.031.1-F_at −0.6565 0.65650401 8.347842 3E−13 57447.031 NM_201535.1 AI272253.1 EST 1 464 140885.011.1-C −0.65642 0.6564245 8.346065 3E−13 140885.01 NM_080792.2 BM041242.1 EST 1 465 59.003.1-T_at −0.65633 0.65632979 8.34395 3E−13 59.003.1 NM_001613.1 DD218797.1 GENBANK_PATENT 1 466 3832.002.1-D_at 0.655783 0.65578291 8.331747 4E−13 3832.002. NM_004523.2 BQ959682.1 EST 1 467 3880.005.1-D_at −0.65576 0.65576275 8.331298 4E−13 3880.005. NM_002276.3 BE732853.1 EST 1 468 3084.012.1-F_at −0.65533 0.65532867 8.32163 4E−13 3084.012. NM_013957.1 U02325.1 mRNA 1 469 6595.012.1-B_at −0.65524 0.65523847 8.319622 4E−13 6595.012. NM_003070.3 DA368288.1 EST 1 470 59.012.2-D_at −0.65512 0.65511987 8.316984 4E−13 59.012.2 NM_001613.1 AL546033.3 EST 1 471 57447.034.1-C_at −0.655 0.65500441 8.314417 4E−13 57447.034 NM_201535.1 BC011240.1 mRNA 1 472 56477.001.1-B_at −0.65493 0.65492856 8.312731 4E−13 56477.001 NM_148672.1 NM_019846.3 REFSEQ 13 473 57447.041.1-D_at −0.65415 0.6541546 8.295552 4E−13 57447.041 NM_201535.1 DA295124.1 EST 1 474 9768.005.1-B_at 0.653838 0.65383824 8.288543 5E−13 9768.005. NM_014736.4 BG529193.1 EST 13 475 285203.001.2-C −0.65337 0.653374 8.278271 5E−13 285203.00 NM_173654.1 AK126187.1 mRNA 3 476 147495.006.1-B −0.65324 0.6532398 8.275305 5E−13 147495.00 NM_153000.3 CN421888.1 EST 1 477 7018.029.1-D_at −0.65323 0.65323377 8.275172 5E−13 7018.029. NM_001063.2 AV656085.1 EST 1 478 3852.009.1-T_at −0.65315 0.65314811 8.273279 5E−13 3852.009. NM_000424.2 BQ378037.1 EST 1 479 59.023.2-D_at −0.65311 0.65311489 8.272545 5E−13 59.023.2 NM_001613.1 DB248573.1 EST 1 480 1959.002.1-D_at −0.65279 0.65278556 8.265275 5E−13 1959.002. NM_000399.2 DB264199.1 EST 5 481 7018.014.1-D_at −0.65274 0.65273731 8.264211 5E−13 7018.014. NM_001063.2 AX147483.1 GENBANK_PATENT 1 482 5858.004.1-F_at −0.65256 0.65255793 8.260255 5E−13 5858.004. NM_002864.1 DB033417.1 EST 1 483 79192.002.2-D_at −0.65251 0.65251201 8.259242 5E−13 79192.002 NM_024337.3 CQ731489.1 GENBANK_PATENT 1 484 59.008.2-B_at −0.65248 0.65247737 8.258479 5E−13 59.008.2 NM_001613.1 BP373197.1 EST 1 485 8404.008.1-E_at −0.65196 0.65195548 8.246986 6E−13 8404.008. NM_004684.2 DA342341.1 EST 1 486 59.008.1-F_at −0.65193 0.65192656 8.24635 6E−13 59.008.1 NM_001613.1 BP373197.1 EST 1 487 4240.011.1-B_at −0.65168 0.65168158 8.240963 6E−13 4240.011. NM_005928.1 DA921691.1 EST 1 488 94274.002.1-C_at −0.65161 0.65161159 8.239425 6E−13 94274.002 NM_033256.1 CQ730829.1 GENBANK_PATENT 1 489 4638.015.1-T_at −0.65116 0.65115703 8.229444 6E−13 4638.015. NM_053025.2 NM_053029.2 REFSEQ 2 490 6376.001.1-T_at −0.65101 0.6510092 8.226201 6E−13 6376.001. NM_002996.3 AK223351.1 mRNA 48 491 57447.043.1-F_at −0.65059 0.65059178 8.217053 6E−13 57447.043 NM_201535.1 DA829299.1 EST 1 492 59.039.1-T_at −0.65045 0.65045393 8.214035 6E−13 59.039.1 NM_001613.1 EH_001613.4 PREDICTED 1 493 4638.006.1-B_at −0.65024 0.65023997 8.209353 7E−13 4638.006. NM_053025.2 DR005817.1 EST 2 494 25802.003.1-F_at −0.65011 0.65011381 8.206594 7E−13 25802.003 NM_012134.1 BC001755.1 mRNA 1 495 57447.025.1-T_at −0.65004 0.65003729 8.204921 7E−13 57447.025 NM_201535.1 DA646455.1 EST 2 496 57447.017.1-T_at −0.64984 0.64984134 8.20064 7E−13 57447.017 NM_201535.1 DA130260.1 EST 1 497 7018.026.1-C_at −0.64969 0.64969118 8.19736 7E−13 7018.026. NM_001063.2 BM690655.1 EST 1 498 7018.028.1-E_at −0.64913 0.64913076 8.185136 7E−13 7018.028. NM_001063.2 BX537660.1 mRNA 1 499 4915.008.1-C_at −0.64904 0.64904081 8.183176 7E−13 4915.008. NM_006180.3 NM_001007097 REFSEQ 4 500 358.018.1-C_at −0.64903 0.64902608 8.182855 7E−13 358.018.1 NM_198098.1 BI765065.1 EST 1 501 7153.002.6-B_at 0.648669 0.64866924 8.175087 8E−13 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 502 57447.012.1-T_at −0.6478 0.64780212 8.156247 9E−13 57447.012 NM_201535.1 DB294263.1 EST 1 503 59.040.1-B_at −0.6477 0.64769503 8.153924 9E−13 59.040.1 NM_001613.1 EH_001613.6 PREDICTED 1 504 57447.006.1-T_at −0.64719 0.64718891 8.142957 9E−13 57447.006 NM_201535.1 DA283861.1 EST 4 505 9493.006.1-F_at 0.646558 0.64655811 8.129315 1E−12 9493.006. NM_138555.1 BF240578.1 EST 1 506 57447.004.1-T_at −0.64628 0.64628054 8.123321 1E−12 57447.004 NM_201535.1 CD515320.1 EST 2 507 57447.004.2-B_at −0.64619 0.64619175 8.121404 1E−12 57447.004 NM_201535.1 CD515320.1 EST 2 508 7373.001.2-D_at −0.64567 0.64566532 8.110055 1E−12 7373.001. NM_021110.1 DB089175.1 EST 1 509 9493.004.1-B_at 0.64562 0.64562012 8.109081 1E−12 9493.004. NM_138555.1 BM792243.1 EST 1 510 2568.005.2-C_at −0.64555 0.64555051 8.107582 1E−12 2568.005. NM_014211.1 AK055205.1 mRNA 11 511 7018.029.1-F_at −0.64542 0.64541955 8.104763 1E−12 7018.029. NM_001063.2 AV656085.1 EST 1 512 26289.013.1-B_at −0.64525 0.64525015 8.101118 1E−12 26289.013 NM_174858.1 CK024190.1 EST 1 513 7169.015.1-B_at −0.64523 0.64522581 8.100594 1E−12 7169.015. NM_213674.1 DB291177.1 EST 1 514 57451.001.3-F_at −0.64518 0.64517957 8.0996 1E−12 57451.001 XM_931456.1 CS188752.1 GENBANK_PATENT 1 515 2568.005.2-F_at −0.64485 0.64485248 8.092569 1E−12 2568.005. NM_014211.1 AK055205.1 mRNA 11 516 57447.004.2-F_at −0.6444 0.6444048 8.082959 1E−12 57447.004 NM_201535.1 CD515320.1 EST 2 517 8404.004.1-D_at −0.64434 0.6443376 8.081518 1E−12 8404.004. NM_004684.2 DA589023.1 EST 1 518 3855.004.2-D_at −0.64418 0.6441826 8.078194 1E−12 3855.004. NM_005556.3 BU164293.1 EST 1 519 3872.014.1-F_at −0.64417 0.64416831 8.077888 1E−12 3872.014. NM_000422.1 BG678436.1 EST 1 520 57447.033.1-F_at −0.64416 0.64415874 8.077683 1E−12 57447.033 NM_201535.1 DA135222.1 EST 1 521 9452.001.1-T_at −0.64405 0.64405491 8.075458 1E−12 9452.001. NM_004867.3 BG713980.1 EST 4 522 59.033.2-T_at −0.64401 0.6440144 8.07459 1E−12 59.033.2 NM_001613.1 BQ881176.1 EST 6 523 3084.009.1-T_at −0.64398 0.64398407 8.07394 1E−12 3084.009. NM_013957.1 U02327.1 mRNA 2 524 57447.040.1-T_at −0.64395 0.6439477 8.073161 1E−12 57447.040 NM_201535.1 DA207862.1 EST 1 525 4833.004.1-T_at 0.643936 0.64393608 8.072912 1E−12 4833.004. NM_005009.2 BG478602.1 EST 8 526 3426.001.1-F_at −0.64388 0.64388211 8.071756 1E−12 3426.001. NM_000204.1 BC020718.1 mRNA 165 527 59.034.1-B_at −0.64382 0.64381551 8.07033 1E−12 59.034.1 — — — — 528 10253.001.1-E_at −0.64381 0.64381114 8.070237 1E−12 10253.001 NM_005842.2 BE297407.1 EST 1 529 9073.001.1-C_at −0.64379 0.64379361 8.069862 1E−12 9073.001. NM_199328.1 BC020866.1 mRNA 1 530 51201.005.1-T_at −0.64366 0.64366016 8.067005 1E−12 51201.005 NM_016353.2 DA655803.1 EST 1 531 9477.006.1-C_at −0.64347 0.64347364 8.063015 1E−12 9477.006. NM_004275.3 DA588860.1 EST 1 532 57447.028.1-T_at −0.64334 0.64334257 8.060213 1E−12 57447.028 NM_201535.1 DA205446.1 EST 1 533 25925.007.1-T_at −0.64319 0.64319062 8.056966 1E−12 25925.007 NM_015461.1 DA235718.1 EST 1 534 59.024.2-B_at −0.64296 0.64295617 8.051959 1E−12 59.024.2 — — — — 535 2.022.1-T_at −0.64285 0.64285401 8.049778 1E−12 2.022.1 NM_000014.4 BP343424.1 EST 1 536 4281.008.2-B_at −0.64283 0.64282648 8.04919 1E−12 4281.008. NM_033290.1 AY539984.1 mRNA 1 537 90231.001.1-C_at −0.64281 0.64281469 8.048939 1E−12 90231.001 NM_138346.1 BQ673619.1 EST 1 538 358.012.1-D_at −0.64281 0.64280918 8.048821 1E−12 358.012.1 NM_198098.1 AX597685.1 GENBANK_PATENT 1 539 3852.021.1-T_at −0.64278 0.64278273 8.048257 1E−12 3852.021. NM_000424.2 DA764437.1 EST 1 540 7373.003.4-D_at −0.64275 0.64274774 8.04751 1E−12 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 541 57447.048.1-T_at −0.64264 0.64264124 8.045239 1E−12 57447.048 NM_201535.1 BX480398.1 EST 1 542 358.012.1-B_at −0.6417 0.6417015 8.025228 2E−12 358.012.1 NM_198098.1 AX597685.1 GENBANK_PATENT 1 543 7018.025.1-C_at −0.64167 0.64166912 8.024539 2E−12 7018.025. NM_001063.2 BE971065.1 EST 1 544 5608.004.1-T_at −0.64157 0.64157449 8.022528 2E−12 5608.004. NM_002758.2 AL709891.1 EST 1 545 3084.012.2-F_at −0.64148 0.64148473 8.020621 2E−12 3084.012. NM_013957.1 U02325.1 mRNA 1 546 4306.002.1-C_at −0.64137 0.64137229 8.018232 2E−12 4306.002. NM_000901.1 AJ315515.1 mRNA 1 547 4288.004.1-D_at 0.641215 0.64121481 8.014889 2E−12 4288.004. NM_002417.2 BP232141.1 EST 1 548 57447.002.1-F_at −0.6411 0.64110459 8.012549 2E−12 57447.002 NM_201535.1 BF526188.1 EST 1 549 4281.018.1-T_at −0.64087 0.64086989 8.007571 2E−12 4281.018. NM_033290.1 AY539998.1 mRNA 1 550 10144.020.2-B_at −0.64053 0.64053304 8.000433 2E−12 10144.020 NM_014883.2 DA864231.1 EST 1 551 6876.016.1-E_at −0.64047 0.64046896 7.999075 2E−12 6876.016. NM_001001522. AB209555.1 mRNA 2 552 57447.008.2-T_at −0.64046 0.64045856 7.998855 2E−12 57447.008 NM_201535.1 DB195772.1 EST 1 553 51203.004.1-T_at 0.640272 0.64027205 7.994907 2E−12 51203.004 NM_016359.2 DB126040.1 EST 1 554 2335.028.1-B_at 0.639825 0.63982479 7.985449 2E−12 2335.028. NM_212482.1 AJ320525.1 mRNA 1 555 7018.028.1-F_at −0.63974 0.63973608 7.983575 2E−12 7018.028. NM_001063.2 BX537660.1 mRNA 1 556 7373.003.5-T_at −0.63956 0.63955526 7.979756 2E−12 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 557 81557.006.1-C_at −0.63955 0.63955366 7.979722 2E−12 81557.006 NM_030801.2 AK094541.1 mRNA 9 558 3866.002.1-D_at −0.63923 0.63923163 7.972927 2E−12 3866.002. NM_002275.2 BG990007.1 EST 1 559 3866.001.1-B_at −0.63865 0.63865251 7.960724 2E−12 3866.001. NM_002275.2 CQ733235.1 GENBANK_PATENT 23 560 55107.006.2-T_at −0.63865 0.63864972 7.960666 2E−12 55107.006 NM_018043.4 CQ722042.1 GENBANK_PATENT 1 561 79068.010.1-D_at −0.63836 0.63836198 7.954611 2E−12 79068.010 XM_051200.8 DA647247.1 EST 1 562 57447.009.1-T_at −0.63836 0.63835821 7.954532 2E−12 57447.009 NM_201535.1 BI550962.1 EST 1 563 2115.015.1-T_at −0.638 0.63799997 7.947002 2E−12 2115.015. NM_004956.3 DA220931.1 EST 1 564 1756.013.1-C_at −0.638 0.63799967 7.946996 2E−12 1756.013. NM_000109.2 NM_004019.1 REFSEQ 2 565 7169.015.1-F_at −0.63796 0.63796151 7.946194 2E−12 7169.015. NM_213674.1 DB291177.1 EST 1 566 65983.013.2-F_at −0.63792 0.63792448 7.945416 2E−12 65983.013 NM_023927.1 AA610396.1 EST 1 567 8404.001.1-B_at −0.63758 0.63757819 7.938148 2E−12 8404.001. NM_004684.2 DA132781.1 EST 1 568 4240.004.1-B_at −0.63705 0.6370484 7.927043 3E−12 4240.004. NM_005928.1 BC003610.2 mRNA 448 569 57447.012.2-T_at −0.63699 0.63699351 7.925894 3E−12 57447.012 NM_201535.1 DB294263.1 EST 1 570 57447.024.1-F_at −0.63699 0.63698737 7.925765 3E−12 57447.024 NM_201535.1 DA566498.1 EST 1 571 358.018.1-T_at −0.63696 0.63695985 7.925189 3E−12 358.018.1 NM_198098.1 BI765065.1 EST 1 572 57447.048.2-T_at −0.63688 0.6368768 7.92345 3E−12 57447.048 NM_201535.1 BX480398.1 EST 1 573 59.031.1-C_at −0.63685 0.63684644 7.922815 3E−12 59.031.1 NM_001613.1 BG197213.1 EST 19 574 3860.007.1-F_at −0.63682 0.63682338 7.922332 3E−12 3860.007. NM_153490.1 DB256579.1 EST 1 575 8404.028.1-C_at −0.63664 0.63664266 7.918551 3E−12 8404.028. NM_004684.2 CQ727530.1 GENBANK_PATENT 1 576 4240.011.3-E_at −0.63664 0.63664099 7.918517 3E−12 4240.011. NM_005928.1 DA921691.1 EST 1 577 59.022.2-B_at −0.63634 0.63633565 7.912134 3E−12 59.022.2 — — — — 578 3866.002.1-F_at −0.63598 0.63598268 7.904763 3E−12 3866.002. NM_002275.2 BG990007.1 EST 1 579 3866.002.1-T_at −0.63597 0.63596762 7.904448 3E−12 3866.002. NM_002275.2 BG990007.1 EST 1 580 4915.005.1-B_at −0.63568 0.63568404 7.898533 3E−12 4915.005. NM_006180.3 BP348402.1 EST 1 581 8404.008.1-F_at −0.63556 0.63555525 7.895848 3E−12 8404.008. NM_004684.2 DA342341.1 EST 1 582 79608.002.1-F_at −0.63554 0.63553682 7.895464 3E−12 79608.002 NM_024557.2 AK021670.1 mRNA 3 583 8404.023.1-D_at −0.63553 0.6355289 7.895299 3E−12 8404.023. NM_004684.2 BX463355.2 EST 1 584 3426.002.1-D_at −0.63533 0.63533255 7.891208 3E−12 3426.002. NM_000204.1 CQ718881.1 GENBANK_PATENT 1 585 2335.027.1-T_at 0.635297 0.63529691 7.890465 3E−12 2335.027. NM_212482.1 AJ320527.1 mRNA 1 586 11065.009.1-T_at 0.635032 0.63503202 7.884951 3E−12 11065.009 NM_181802.1 CN354813.1 EST 1 587 140885.013.1-F −0.63461 0.63461049 7.876186 3E−12 140885.01 NM_080792.2 BU180215.1 EST 1 588 57447.021.1-B_at −0.6346 0.63459853 7.875938 3E−12 57447.021 NM_201535.1 BQ954948.1 EST 28 589 25802.004.1-C_at −0.63457 0.63457163 7.875379 3E−12 25802.004 NM_012134.1 DA924386.1 EST 1 590 4638.014.1-F_at −0.63442 0.63441678 7.872162 3E−12 4638.014. NM_053025.2 NM_053027.2 REFSEQ 2 591 9493.004.1-F_at 0.634402 0.63440178 7.871851 3E−12 9493.004. NM_138555.1 BM792243.1 EST 1 592 8404.004.1-B_at −0.63427 0.63426893 7.869093 3E−12 8404.004. NM_004684.2 DA589023.1 EST 1 593 8404.004.2-T_at −0.63407 0.63407245 7.865016 3E−12 8404.004. NM_004684.2 DA589023.1 EST 1 594 57447.010.2-T_at −0.63407 0.63406601 7.864882 3E−12 57447.010 NM_201535.1 BP349691.1 EST 1 595 57447.010.3-B_at −0.634 0.6340009 7.863532 3E−12 57447.010 NM_201535.1 BP349691.1 EST 1 596 27122.006.1-T_at −0.63398 0.63398053 7.863109 3E−12 27122.006 NM_013253.4 DA171350.1 EST 1 597 5156.005.1-T_at −0.63358 0.63357822 7.854771 4E−12 5156.005. NM_006206.3 BP336054.1 EST 1 598 5858.004.1-E_at −0.63354 0.63353969 7.853973 4E−12 5858.004. NM_002864.1 DB033417.1 EST 1 599 25802.008.1-D_at −0.63342 0.63342256 7.851548 4E−12 25802.008 NM_012134.1 DA767597.1 EST 1 600 2327.002.2-T_at −0.63326 0.63326081 7.848201 4E−12 2327.002. NM_001460.2 CD684429.1 EST 1 601 3852.004.1-C_at −0.63298 0.63298294 7.842454 4E−12 3852.004. NM_000424.2 BE715131.1 EST 1 602 59.026.2-F_at −0.63296 0.63295912 7.841961 4E−12 59.026.2 — — — — 603 57447.029.1-C_at −0.63295 0.63295354 7.841846 4E−12 57447.029 NM_201535.1 BX354120.2 EST 6 604 7169.022.1-D_at −0.63293 0.63293098 7.84138 4E−12 7169.022. NM_213674.1 BG385598.1 EST 1 605 23266.001.3-B_at −0.63277 0.63276519 7.837954 4E−12 23266.001 NM_012302.2 AK123422.1 mRNA 2 606 3084.012.1-B_at −0.63235 0.63235255 7.829435 4E−12 3084.012. NM_013957.1 U02325.1 mRNA 1 607 29127.019.2-T_at 0.632352 0.63235178 7.829419 4E−12 29127.019 NM_013277.2 DA779708.1 EST 1 608 10253.004.1-T_at −0.63208 0.63208261 7.823868 4E−12 10253.004 NM_005842.2 BQ889545.1 EST 2 609 10124.002.1-D_at −0.63205 0.63205489 7.823297 4E−12 10124.002 NM_001037164. BG178114.1 EST 6 610 3861.013.1-D_at −0.63198 0.63198062 7.821766 4E−12 3861.013. NM_000526.3 BM563823.1 EST 1 611 8404.032.1-T_at −0.63197 0.63197222 7.821593 4E−12 8404.032. NM_004684.2 CQ498058.1 GENBANK_PATENT 1 612 84441.002.1-E_at −0.63188 0.63188122 7.819718 4E−12 84441.002 NM_032427.1 CQ739825.1 GENBANK_PATENT 1 613 2.013.1-E_at −0.63181 0.63181031 7.818258 4E−12 2.013.1 NM_000014.4 DA467444.1 EST 1 614 3084.004.1-T_at −0.63137 0.63136737 7.809141 4E−12 3084.004. NM_013957.1 NM_013964.1 REFSEQ 5 615 5288.001.2-F_at −0.63124 0.63123725 7.806466 5E−12 5288.001. NM_004570.2 CQ720591.1 GENBANK_PATENT 1 616 57447.017.1-F_at −0.63113 0.63113433 7.80435 5E−12 57447.017 NM_201535.1 DA130260.1 EST 1 617 3084.006.1-T_at −0.63106 0.63105508 7.802721 5E−12 3084.006. NM_013957.1 NM_013956.1 REFSEQ 3 618 59.039.1-F_at −0.63095 0.63094608 7.800482 5E−12 59.039.1 NM_001613.1 EH_001613.4 PREDICTED 1 619 2.024.1-T_at −0.63086 0.63085582 7.798628 5E−12 2.024.1 NM_000014.4 DB286897.1 EST 1 620 3815.002.2-E_at −0.63085 0.63085365 7.798584 5E−12 3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 621 1756.009.1-D_at −0.63082 0.63082241 7.797942 5E−12 1756.009. NM_000109.2 NM_004023.1 REFSEQ 1 622 7091.014.1-B_at −0.63047 0.63046815 7.790673 5E−12 7091.014. NM_007005.3 BM480087.1 EST 1 623 4629.015.1-F_at −0.6304 0.63039903 7.789255 5E−12 4629.015. NM_022844.1 DB284318.1 EST 1 624 59.008.2-F_at −0.63016 0.63015808 7.784317 5E−12 59.008.2 NM_001613.1 BP373197.1 EST 1 625 2568.005.2-T_at −0.63012 0.6301238 7.783614 5E−12 2568.005. NM_014211.1 AK055205.1 mRNA 11 626 115207.002.1-T −0.62994 0.62993556 7.779759 5E−12 115207.00 NM_138444.2 CQ851144.1 GENBANK_PATENT 1 627 4281.001.1-T_at −0.62982 0.62981987 7.777391 5E−12 4281.001. NM_033290.1 AY539999.1 mRNA 1 628 84668.002.2-T_at −0.62976 0.62975676 7.776099 5E−12 84668.002 NM_032581.2 AL833296.1 mRNA 20 629 4240.004.1-F_at −0.6295 0.62950111 7.77087 5E−12 4240.004. NM_005928.1 BC003610.2 mRNA 448 630 8404.005.1-D_at −0.62918 0.62917718 7.76425 6E−12 8404.005. NM_004684.2 DA763956.1 EST 1 631 8404.032.1-B_at −0.62902 0.62902338 7.761109 6E−12 8404.032. NM_004684.2 CQ498058.1 GENBANK_PATENT 1 632 57447.044.1-E_at −0.6289 0.62890008 7.758592 6E−12 57447.044 NM_201535.1 DB232855.1 EST 1 633 8626.006.2-F_at −0.62867 0.6286676 7.753849 6E−12 8626.006. NM_003722.3 CB049427.1 EST 1 634 57447.051.2-B_at −0.62855 0.62855194 7.751491 6E−12 57447.051 NM_201535.1 BX460053.2 EST 1 635 1063.001.1-T_at 0.628003 0.62800305 7.74031 6E−12 1063.001. NM_016343.3 BG941308.1 EST 1 636 3426.002.1-T_at −0.62796 0.62796276 7.73949 6E−12 3426.002. NM_000204.1 CQ718881.1 GENBANK_PATENT 1 637 1308.001.1-T_at −0.62793 0.62793498 7.738925 6E−12 1308.001. NM_130778.1 BM773425.1 EST 1 638 389432.002.1-F −0.62759 0.62758948 7.731899 6E−12 389432.00 NM_001030060. CQ751492.1 GENBANK_PATENT 1 639 57447.017.1-B_at −0.62755 0.62754878 7.731072 7E−12 57447.017 NM_201535.1 DA130260.1 EST 1 640 2115.014.1-F_at −0.62729 0.62729339 7.725883 7E−12 2115.014. NM_004956.3 CN396909.1 EST 1 641 5284.004.1-T_at −0.62724 0.6272429 7.724858 7E−12 5284.004. NM_002644.2 DB225999.1 EST 1 642 57447.029.1-F_at −0.62716 0.6271633 7.723242 7E−12 57447.029 NM_201535.1 BX354120.2 EST 6 643 8626.006.1-F_at −0.62697 0.62697054 7.71933 7E−12 8626.006. NM_003722.3 CB049427.1 EST 1 644 2982.002.1-C_at −0.62686 0.62686245 7.717138 7E−12 2982.002. NM_000856.2 BP199345.1 EST 1 645 57447.047.1-T_at −0.62685 0.62685067 7.716899 7E−12 57447.047 NM_201535.1 DA353543.1 EST 1 646 5803.006.1-E_at −0.62682 0.62681659 7.716208 7E−12 5803.006. NM_002851.1 BM473091.1 EST 1 647 57447.021.1-F_at −0.62659 0.62658775 7.71157 7E−12 57447.021 NM_201535.1 BQ954948.1 EST 28 648 57447.039.1-F_at −0.62651 0.62651329 7.710061 7E−12 57447.039 NM_201535.1 DA356658.1 EST 1 649 4281.008.2-F_at −0.62638 0.62637927 7.707347 7E−12 4281.008. NM_033290.1 AY539984.1 mRNA 1 650 57447.029.1-D_at −0.62629 0.62629118 7.705563 7E−12 57447.029 NM_201535.1 BX354120.2 EST 6 651 65983.013.1-B_at −0.62562 0.6256189 7.691968 8E−12 65983.013 NM_023927.1 AA610396.1 EST 1 652 5284.004.1-E_at −0.62553 0.6255276 7.690123 8E−12 5284.004. NM_002644.2 DB225999.1 EST 1 653 4240.011.1-D_at −0.62513 0.62512689 7.682036 8E−12 4240.011. NM_005928.1 DA921691.1 EST 1 654 57447.024.1-T_at −0.62502 0.62502436 7.679968 8E−12 57447.024 NM_201535.1 DA566498.1 EST 1 655 6876.011.1-B_at −0.625 0.62499658 7.679408 8E−12 6876.011. NM_001001522. AW956430.1 EST 1 656 7373.003.2-T_at −0.62485 0.62484538 7.676359 8E−12 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 657 3852.014.1-D_at −0.62476 0.62476477 7.674735 9E−12 3852.014. NM_000424.2 BF826002.1 EST 1 658 4915.005.1-D_at −0.62473 0.62473239 7.674083 9E−12 4915.005. NM_006180.3 BP348402.1 EST 1 659 9768.002.2-B_at 0.624527 0.62452688 7.669944 9E−12 9768.002. NM_014736.4 BM908225.1 EST 1 660 140885.010.1-D −0.62442 0.62441747 7.667741 9E−12 140885.01 NM_080792.2 CQ728313.1 GENBANK_PATENT 1 661 4638.020.1-E_at −0.62432 0.62431859 7.665751 9E−12 4638.020. NM_053025.2 DA694890.1 EST 1 662 57447.017.1-C_at −0.62424 0.62423695 7.664109 9E−12 57447.017 NM_201535.1 DA130260.1 EST 1 663 7373.004.1-T_at −0.62423 0.6242336 7.664041 9E−12 7373.004. NM_021110.1 M64109.1 mRNA 1 664 3852.008.2-E_at −0.62396 0.62396244 7.658589 9E−12 3852.008. NM_000424.2 BG675837.1 EST 1 665 4281.015.1-E_at −0.62376 0.62376072 7.654536 9E−12 4281.015. NM_033290.1 AY540009.1 mRNA 1 666 8404.013.1-C_at −0.62375 0.62374788 7.654278 9E−12 8404.013. NM_004684.2 BP376616.1 EST 9 667 90293.001.3-T_at −0.62357 0.62357218 7.65075 1E−11 90293.001 NM_033495.2 CQ714141.1 GENBANK_PATENT 1 668 57447.044.1-T_at −0.62348 0.6234819 7.648937 1E−11 57447.044 NM_201535.1 DB232855.1 EST 1 669 23650.011.2-D_at −0.62318 0.62317705 7.642822 1E−11 23650.011 NM_058193.1 NM_012101.2 REFSEQ 11 670 2335.006.1-D_at 0.623003 0.62300327 7.639338 1E−11 2335.006. NM_212482.1 CX785805.1 EST 1 671 57447.022.1-T_at −0.6229 0.62290388 7.637347 1E−11 57447.022 NM_201535.1 DA079074.1 EST 2 672 8404.032.1-D_at −0.62271 0.62271252 7.633514 1E−11 8404.032. NM_004684.2 CQ498058.1 GENBANK_PATENT 1 673 8404.030.1-F_at −0.62267 0.62267432 7.632749 1E−11 8404.030. NM_004684.2 CD357736.1 EST 1 674 5803.002.2-T_at −0.6225 0.62250014 7.629263 1E−11 5803.002. NM_002851.1 CQ725791.1 GENBANK_PATENT 24 675 8404.004.2-C_at −0.62246 0.62245993 7.628459 1E−11 8404.004. NM_004684.2 DA589023.1 EST 1 676 84441.005.1-C_at −0.62236 0.62236291 7.626518 1E−11 84441.005 NM_032427.1 CQ739827.1 GENBANK_PATENT 1 677 7091.015.1-F_at −0.62201 0.62201208 7.619505 1E−11 7091.015. NM_007005.3 CQ724084.1 GENBANK_PATENT 1 678 2119.005.1-D_at −0.62174 0.6217418 7.614107 1E−11 2119.005. NM_004454.1 BU197295.1 EST 1 679 7373.003.6-F_at −0.6217 0.62170218 7.613316 1E−11 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 680 79608.008.1-T_at −0.6214 0.62140438 7.607374 1E−11 79608.008 NM_024557.2 DA748988.1 EST 2 681 3852.008.1-T_at −0.62129 0.62128908 7.605075 1E−11 3852.008. NM_000424.2 BG675837.1 EST 1 682 8626.007.1-T_at −0.62113 0.62113254 7.601955 1E−11 8626.007. NM_003722.3 BG698723.1 EST 1 683 8404.022.1-T_at −0.62104 0.62103797 7.60007 1E−11 8404.022. NM_004684.2 BP311988.1 EST 1 684 8404.034.1-T_at −0.62101 0.62101196 7.599552 1E−11 8404.034. NM_004684.2 DA148306.1 EST 1 685 57447.049.1-T_at −0.62097 0.62096556 7.598628 1E−11 57447.049 NM_201535.1 DB180733.1 EST 1 686 5311.002.1-B_at −0.62092 0.62092128 7.597746 1E−11 5311.002. NM_000297.2 CQ727531.1 GENBANK_PATENT 1 687 2335.025.3-T_at 0.620916 0.62091648 7.597651 1E−11 2335.025. NM_212482.1 CQ715726.1 GENBANK_PATENT 3 688 4147.012.1-T_at −0.62076 0.62075962 7.594528 1E−11 4147.012. NM_002380.3 BX397573.2 EST 1 689 301.015.1-T_at −0.62074 0.62074218 7.594181 1E−11 301.015.1 NM_000700.1 BM477702.1 EST 1 690 301.004.1-T_at −0.62073 0.62073001 7.593939 1E−11 301.004.1 NM_000700.1 DB194639.1 EST 1 691 3426.002.2-F_at −0.62048 0.62047946 7.588954 1E−11 3426.002. NM_000204.1 CQ718881.1 GENBANK_PATENT 1 692 7091.001.1-C_at −0.62037 0.62037055 7.586788 1E−11 7091.001. NM_007005.3 BC045650.1 mRNA 17 693 8404.021.1-D_at −0.62032 0.6203222 7.585827 1E−11 8404.021. NM_004684.2 DA291834.1 EST 1 694 7153.002.3-B_at 0.620304 0.62030417 7.585469 1E−11 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 695 53335.002.1-E_at −0.62026 0.62026302 7.584651 1E−11 53335.002 NM_018014.2 BU159551.1 EST 1 696 5284.003.2-T_at −0.62002 0.62001653 7.579754 1E−11 5284.003. NM_002644.2 BP220016.1 EST 1 697 4306.002.1-F_at −0.61996 0.61995574 7.578547 1E−11 4306.002. NM_000901.1 AJ315515.1 mRNA 1 698 5284.003.2-D_at −0.61991 0.61991035 7.577646 1E−11 5284.003. NM_002644.2 BP220016.1 EST 1 699 5803.002.1-T_at −0.61977 0.61977142 7.574888 1E−11 5803.002. NM_002851.1 CQ725791.1 GENBANK_PATENT 24 700 10253.004.1-E_at −0.61973 0.61973277 7.574121 1E−11 10253.004 NM_005842.2 BQ889545.1 EST 2 701 23650.020.1-T_at −0.61972 0.61971511 7.573771 1E−11 23650.020 NM_058193.1 DB266728.1 EST 1 702 57447.042.1-T_at −0.61964 0.6196367 7.572215 1E−11 57447.042 NM_201535.1 DA937014.1 EST 1 703 6876.023.1-F_at −0.6196 0.61960408 7.571568 1E−11 6876.023. NM_001001522. CN482091.1 EST 1 704 7169.015.1-C_at −0.61949 0.61948888 7.569283 1E−11 7169.015. NM_213674.1 DB291177.1 EST 1 705 7153.002.4-F_at 0.619203 0.61920323 7.563622 1E−11 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 706 4629.016.1-B_at −0.61918 0.61917512 7.563065 1E−11 4629.016. NM_022844.1 DB289769.1 EST 1 707 6876.002.1-C_at −0.61913 0.61912596 7.562091 1E−11 6876.002. NM_001001522. DB262921.1 EST 1 708 65983.007.1-T_at −0.61906 0.61905788 7.560743 1E−11 65983.007 NM_023927.1 DA388235.1 EST 1 709 7373.003.2-F_at −0.61891 0.61891452 7.557905 1E−11 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 710 152015.004.1-T −0.61872 0.61872078 7.554071 2E−11 152015.00 NM_001012337. BC015413.1 mRNA 2 711 8404.004.2-B_at −0.61824 0.61823995 7.544566 2E−11 8404.004. NM_004684.2 DA589023.1 EST 1 712 6285.001.1-B_at −0.61815 0.61815486 7.542886 2E−11 6285.001. NM_006272.1 BP349776.1 EST 1 713 2115.007.1-E_at −0.61784 0.61784158 7.536702 2E−11 2115.007. NM_004956.3 DA189670.1 EST 1 714 2.013.1-T_at −0.61782 0.61782175 7.536311 2E−11 2.013.1 NM_000014.4 DA467444.1 EST 1 715 6289.005.1-T_at −0.61778 0.6177768 7.535424 2E−11 6289.005. NM_030754.2 BG618888.1 EST 39 716 9232.002.1-T_at 0.617748 0.61774763 7.534848 2E−11 9232.002. NM_004219.2 BM459529.1 EST 2 717 59.014.1-B_at −0.61765 0.61765007 7.532925 2E−11 59.014.1 NM_001613.1 CB962422.1 EST 1 718 59.031.1-F_at −0.61751 0.61750627 7.53009 2E−11 59.031.1 NM_001613.1 BG197213.1 EST 19 719 3084.011.1-T_at −0.61746 0.61746489 7.529274 2E−11 3084.011. NM_013957.1 CN603661.1 EST 1 720 3872.005.1-F_at −0.61737 0.61737414 7.527486 2E−11 3872.005. NM_000422.1 BG682094.1 EST 1 721 3084.012.3-F_at −0.6173 0.61730492 7.526122 2E−11 3084.012. NM_013957.1 U02325.1 mRNA 1 722 81704.008.1-F_at −0.61719 0.61719009 7.523861 2E−11 81704.008 NM_203447.1 BC045629.1 mRNA 1 723 140885.010.2-C −0.617 0.61700383 7.520194 2E−11 140885.01 NM_080792.2 CQ728313.1 GENBANK_PATENT 1 724 338707.006.1-E −0.61688 0.61687839 7.517726 2E−11 338707.00 NM_178537.3 BX115728.1 EST 1 725 23266.008.2-T_at −0.61684 0.61683767 7.516924 2E−11 23266.008 NM_012302.2 CQ799210.1 GENBANK_PATENT 1 726 120.005.2-E_at −0.61665 0.61664987 7.513231 2E−11 120.005.2 NM_019903.3 AK223270.1 mRNA 78 727 4281.009.1-E_at −0.61647 0.61647345 7.509764 2E−11 4281.009. NM_033290.1 AY540014.1 mRNA 1 728 4094.001.1-T_at −0.61638 0.61638223 7.507972 2E−11 4094.001. NM_001031804. NM_005360.3 REFSEQ 17 729 2995.001.1-T_at −0.61614 0.6161404 7.503223 2E−11 2995.001. NM_002101.3 CQ729268.1 GENBANK_PATENT 1 730 4638.011.1-T_at −0.61607 0.61606684 7.501779 2E−11 4638.011. NM_053025.2 DB267860.1 EST 1 731 2335.017.1-T_at 0.615955 0.61595485 7.499582 2E−11 2335.017. NM_212482.1 CQ896577.1 GENBANK_PATENT 4 732 5284.001.1-F_at −0.61592 0.61592058 7.498909 2E−11 5284.001. NM_002644.2 AX012182.1 GENBANK_PATENT 1 733 8404.026.1-D_at −0.61589 0.61588535 7.498218 2E−11 8404.026. NM_004684.2 BX647713.1 mRNA 141 734 2335.009.1-D_at 0.615806 0.61580556 7.496653 2E−11 2335.009. NM_212482.1 BG927121.1 EST 51 735 10461.002.2-F_at −0.61571 0.61570541 7.49469 2E−11 10461.002 NM_006343.2 CQ725500.1 GENBANK_PATENT 1 736 84441.002.1-T_at −0.6157 0.61570234 7.494629 2E−11 84441.002 NM_032427.1 CQ739825.1 GENBANK_PATENT 1 737 147495.006.1-T −0.61568 0.61567688 7.49413 2E−11 147495.00 NM_153000.3 CN421888.1 EST 1 738 7091.010.1-B_at −0.61565 0.61564596 7.493524 2E−11 7091.010. NM_007005.3 AL551038.3 EST 1 739 8404.008.1-C_at −0.61554 0.61554203 7.491488 2E−11 8404.008. NM_004684.2 DA342341.1 EST 1 740 6376.001.2-C_at −0.61538 0.61538183 7.488349 2E−11 6376.001. NM_002996.3 AK223351.1 mRNA 48 741 3832.002.1-B_at 0.615014 0.61501375 7.481144 2E−11 3832.002. NM_004523.2 BQ959682.1 EST 1 742 59.034.2-T_at −0.61499 0.61498701 7.480621 2E−11 59.034.2 — — — — 743 147495.005.1-B −0.61488 0.61488109 7.478549 2E−11 147495.00 NM_153000.3 BI822892.1 EST 1 744 3872.005.1-T_at −0.61477 0.61477315 7.476439 2E−11 3872.005. NM_000422.1 BG682094.1 EST 1 745 79895.001.1-D_at −0.61472 0.61471741 7.475349 2E−11 79895.001 NM_024837.2 AX575481.1 GENBANK_PATENT 5 746 57447.038.1-T_at −0.61465 0.61464905 7.474013 2E−11 57447.038 NM_201535.1 DB238920.1 EST 1 747 7373.008.1-T_at −0.61439 0.61438569 7.468868 2E−11 7373.008. NM_021110.1 CQ656872.1 GENBANK_PATENT 1 748 4744.004.1-C_at −0.61432 0.61431915 7.467569 2E−11 4744.004. NM_021076.2 BQ636126.1 EST 1 749 140885.010.1-T −0.61432 0.61431838 7.467554 2E−11 140885.01 NM_080792.2 CQ728313.1 GENBANK_PATENT 1 750 6876.016.2-E_at −0.61423 0.61422523 7.465735 2E−11 6876.016. NM_001001522. AB209555.1 mRNA 2 751 8404.015.1-T_at −0.61419 0.61419393 7.465124 2E−11 8404.015. NM_004684.2 BP194755.1 EST 4 752 4281.014.1-T_at −0.61417 0.61416566 7.464573 2E−11 4281.014. NM_033290.1 AY539986.1 mRNA 1 753 4288.006.1-F_at 0.614163 0.61416265 7.464514 2E−11 4288.006. NM_002417.2 BP363635.1 EST 1 754 25925.009.1-E_at −0.61404 0.61403923 7.462106 2E−11 25925.009 NM_015461.1 DB064380.1 EST 1 755 4240.009.1-B_at −0.61385 0.61385445 7.458502 2E−11 4240.009. NM_005928.1 BG829936.1 EST 2 756 667.010.1-E_at −0.61376 0.61376087 7.456678 2E−11 667.010.1 NM_183380.1 DA361412.1 EST 1 757 3866.005.1-B_at −0.61345 0.61345384 7.450696 2E−11 3866.005. NM_002275.2 AL832226.1 mRNA 37 758 57447.011.1-T_at −0.61343 0.61343087 7.450249 2E−11 57447.011 NM_201535.1 BP199520.1 EST 1 759 57447.034.1-B_at −0.61342 0.61342094 7.450055 2E−11 57447.034 NM_201535.1 BC011240.1 mRNA 1 760 25802.004.1-B_at −0.61332 0.61331747 7.448041 2E−11 25802.004 NM_012134.1 DA924386.1 EST 1 761 8404.024.1-T_at −0.61318 0.61317717 7.44531 3E−11 8404.024. NM_004684.2 DB260047.1 EST 1 762 57447.032.1-T_at −0.61307 0.61306529 7.443134 3E−11 57447.032 NM_201535.1 BI771628.1 EST 3 763 667.021.1-F_at −0.61305 0.61304874 7.442812 3E−11 667.021.1 NM_183380.1 DB134537.1 EST 1 764 5858.001.2-F_at −0.61258 0.6125845 7.433788 3E−11 5858.001. NM_002864.1 BC111756.1 mRNA 2 765 51062.008.1-T_at −0.61217 0.61217313 7.425802 3E−11 51062.008 NM_015915.3 CQ719775.1 GENBANK_PATENT 1 766 2335.013.1-F_at 0.612162 0.61216233 7.425593 3E−11 2335.013. NM_212482.1 AL551632.3 EST 2 767 2568.001.2-T_at −0.61211 0.61210705 7.424521 3E−11 2568.001. NM_014211.1 BX509618.1 EST 1 768 7170.005.2-D_at 0.611952 0.61195174 7.421509 3E−11 7170.005. NM_153649.2 DA762962.1 EST 1 769 57447.034.1-F_at −0.61184 0.61184024 7.419347 3E−11 57447.034 NM_201535.1 BC011240.1 mRNA 1 770 7153.002.6-C_at 0.611814 0.61181444 7.418847 3E−11 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 771 2568.003.1-T_at −0.61165 0.61164713 7.415606 3E−11 2568.003. NM_014211.1 CD696885.1 EST 1 772 59.008.2-T_at −0.61162 0.61161827 7.415046 3E−11 59.008.2 NM_001613.1 BP373197.1 EST 1 773 9898.015.2-B_at 0.611466 0.61146611 7.4121 3E−11 9898.015. NM_014847.2 AJ243670.2 mRNA 1 774 7018.013.1-T_at −0.61122 0.6112152 7.407244 3E−11 7018.013. NM_001063.2 AX147484.1 GENBANK_PATENT 1 775 7170.034.2-D_at 0.611012 0.61101246 7.403323 3E−11 7170.034. NM_153649.2 DA894441.1 EST 1 776 3866.004.1-E_at −0.61074 0.61073542 7.397968 3E−11 3866.004. NM_002275.2 BC110649.1 mRNA 1 777 5284.001.1-T_at −0.61068 0.61067717 7.396843 3E−11 5284.001. NM_002644.2 AX012182.1 GENBANK_PATENT 1 778 2.002.1-C_at −0.61064 0.61064092 7.396143 3E−11 2.002.1 NM_000014.4 CQ672194.1 GENBANK_PATENT 1 779 57447.050.1-T_at −0.61051 0.61050599 7.393537 3E−11 57447.050 NM_201535.1 DA257961.1 EST 1 780 7018.014.1-F_at −0.61047 0.61046981 7.392839 3E−11 7018.014. NM_001063.2 AX147483.1 GENBANK_PATENT 1 781 2335.032.1-D_at 0.610251 0.61025134 7.388623 3E−11 2335.032. NM_212482.1 DA647475.1 EST 1 782 3866.002.1-C_at −0.61025 0.61024968 7.388591 3E−11 3866.002. NM_002275.2 BG990007.1 EST 1 783 57447.043.1-T_at −0.61025 0.61024544 7.388509 3E−11 57447.043 NM_201535.1 DA829299.1 EST 1 784 51201.005.1-D_at −0.61021 0.61021006 7.387827 3E−11 51201.005 NM_016353.2 DA655803.1 EST 1 785 51203.003.1-T_at 0.610008 0.61000819 7.383934 3E−11 51203.003 NM_016359.2 BP283628.1 EST 1 786 9493.001.1-F_at 0.609767 0.60976675 7.379281 3E−11 9493.001. NM_138555.1 BC051826.1 mRNA 17 787 57447.024.1-B_at −0.60944 0.60943797 7.37295 4E−11 57447.024 NM_201535.1 DA566498.1 EST 1 788 80034.003.4-B_at −0.60942 0.6094211 7.372625 4E−11 80034.003 NM_024969.2 CQ733306.1 GENBANK_PATENT 1 789 7170.016.3-C_at 0.609237 0.60923665 7.369076 4E−11 7170.016. NM_153649.2 BF575596.1 EST 1 790 65983.003.1-T_at −0.60914 0.60913896 7.367198 4E−11 65983.003 NM_023927.1 BP292708.1 EST 1 791 57447.026.1-T_at −0.60891 0.60891356 7.362865 4E−11 57447.026 NM_201535.1 BP196338.1 EST 4 792 440421.001.1-F −0.60867 0.6086702 7.35819 4E−11 440421.00 XM_496202.2 XM_934894.1 REFSEQ 2 793 301.008.1-D_at −0.60853 0.60852747 7.355449 4E−11 301.008.1 NM_000700.1 CD688703.1 EST 1 794 80034.002.2-T_at −0.60832 0.60831755 7.351421 4E−11 80034.002 NM_024969.2 DA769284.1 EST 1 795 7153.002.5-B_at 0.608304 0.60830361 7.351154 4E−11 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 796 3852.023.1-T_at −0.60821 0.60820967 7.349352 4E−11 3852.023. NM_000424.2 BG681715.1 EST 1 797 8404.013.1-F_at −0.60812 0.60812437 7.347716 4E−11 8404.013. NM_004684.2 BP376616.1 EST 9 798 2.018.1-C_at −0.60779 0.60778896 7.341289 4E−11 2.018.1 NM_000014.4 DB090657.1 EST 1 799 10124.003.1-B_at −0.60773 0.60772913 7.340143 4E−11 10124.003 NM_001037164. BU664973.1 EST 1 800 3852.008.2-F_at −0.60757 0.60757027 7.337101 4E−11 3852.008. NM_000424.2 BG675837.1 EST 1 801 4288.006.2-T_at 0.607439 0.60743897 7.334588 4E−11 4288.006. NM_002417.2 BP363635.1 EST 1 802 8404.026.1-C_at −0.60743 0.60742535 7.334327 4E−11 8404.026. NM_004684.2 BX647713.1 mRNA 141 803 23650.019.1-C_at −0.6074 0.6073959 7.333764 4E−11 23650.019 NM_058193.1 BI224541.1 EST 1 804 7170.027.1-T_at 0.607197 0.60719709 7.329961 4E−11 7170.027. NM_153649.2 BQ959117.1 EST 1 805 54928.003.1-E_at −0.60719 0.60719005 7.329827 4E−11 54928.003 NM_017813.2 DB283344.1 EST 1 806 2335.025.1-B_at 0.607111 0.60711088 7.328313 4E−11 2335.025. NM_212482.1 CQ715726.1 GENBANK_PATENT 3 807 3084.010.1-T_at −0.60698 0.60697967 7.325805 4E−11 3084.010. NM_013957.1 BC007675.2 mRNA 7 808 57447.051.1-T_at −0.60697 0.60697421 7.325701 4E−11 57447.051 NM_201535.1 BX460053.2 EST 1 809 80034.003.4-T_at −0.60692 0.6069173 7.324613 4E−11 80034.003 NM_024969.2 CQ733306.1 GENBANK_PATENT 1 810 2568.005.1-D_at −0.60678 0.6067777 7.321947 5E−11 2568.005. NM_014211.1 AK055205.1 mRNA 11 811 8404.032.1-F_at −0.60677 0.60676941 7.321788 5E−11 8404.032. NM_004684.2 CQ498058.1 GENBANK_PATENT 1 812 2115.003.1-E_at −0.60663 0.60662753 7.319079 5E−11 2115.003. NM_004956.3 DA128833.1 EST 1 813 57447.035.1-T_at −0.60656 0.60656033 7.317796 5E−11 57447.035 NM_201535.1 BQ636638.1 EST 1 814 8404.009.1-T_at −0.60613 0.60612981 7.309584 5E−11 8404.009. NM_004684.2 BP258993.1 EST 1 815 8404.028.3-B_at −0.60565 0.60564939 7.300432 5E−11 8404.028. NM_004684.2 CQ727530.1 GENBANK_PATENT 1 816 6289.003.1-B_at −0.60525 0.60524909 7.292816 5E−11 6289.003. NM_030754.2 R83510.1 EST 1 817 7170.025.1-F_at 0.604985 0.6049846 7.287789 5E−11 7170.025. NM_153649.2 BE208737.1 EST 1 818 8404.030.1-D_at −0.60498 0.60498368 7.287771 5E−11 8404.030. NM_004684.2 CD357736.1 EST 1 819 8404.009.1-F_at −0.60494 0.6049439 7.287016 5E−11 8404.009. NM_004684.2 BP258993.1 EST 1 820 2335.009.1-T_at 0.604716 0.60471597 7.282687 5E−11 2335.009. NM_212482.1 BG927121.1 EST 51 821 22974.007.1-F_at 0.604647 0.60464714 7.28138 5E−11 22974.007 NM_012112.4 AF287265.1 mRNA 213 822 3426.002.1-B_at −0.6044 0.60439543 7.276604 6E−11 3426.002. NM_000204.1 CQ718881.1 GENBANK_PATENT 1 823 4638.003.1-D_at −0.60438 0.60437577 7.276231 6E−11 4638.003. NM_053025.2 BP289609.1 EST 2 824 4147.011.1-T_at −0.6043 0.60430187 7.274829 6E−11 4147.011. NM_002380.3 BI559593.1 EST 1 825 6876.016.2-T_at −0.60425 0.60425392 7.27392 6E−11 6876.016. NM_001001522. AB209555.1 mRNA 2 826 23650.003.1-F_at −0.60408 0.60408338 7.270687 6E−11 23650.003 NM_058193.1 BI333387.1 EST 1 827 4744.004.1-E_at −0.60408 0.6040798 7.270619 6E−11 4744.004. NM_021076.2 BQ636126.1 EST 1 828 64168.010.1-F_at −0.60405 0.60404978 7.270051 6E−11 64168.010 NM_022351.2 BM985162.1 EST 1 829 9073.001.1-F_at −0.60404 0.60404345 7.269931 6E−11 9073.001. NM_199328.1 BC020866.1 mRNA 1 830 5288.001.3-B_at −0.60399 0.60398504 7.268824 6E−11 5288.001. NM_004570.2 CQ720591.1 GENBANK_PATENT 1 831 3866.005.1-D_at −0.60384 0.60383806 7.26604 6E−11 3866.005. NM_002275.2 AL832226.1 mRNA 37 832 8404.021.1-T_at −0.6038 0.60380179 7.265353 6E−11 8404.021. NM_004684.2 DA291834.1 EST 1 833 25925.011.1-E_at −0.60378 0.6037774 7.264891 6E−11 25925.011 NM_015461.1 DA105762.1 EST 1 834 23266.001.3-F_at −0.60352 0.60352263 7.260069 6E−11 23266.001 NM_012302.2 AK123422.1 mRNA 2 835 9232.004.1-F_at 0.603479 0.60347894 7.259242 6E−11 9232.004. NM_004219.2 BF983295.1 EST 1 836 4147.005.2-F_at −0.60347 0.60346555 7.258989 6E−11 4147.005. NM_002380.3 CQ716197.1 GENBANK_PATENT 1 837 2335.025.3-B_at 0.603394 0.60339429 7.257641 6E−11 2335.025. NM_212482.1 CQ715726.1 GENBANK_PATENT 3 838 4638.006.1-C_at −0.60335 0.60335253 7.256851 6E−11 4638.006. NM_053025.2 DR005817.1 EST 2 839 147804.004.1-T 0.603318 0.60331792 7.256196 6E−11 147804.00 NM_001010856. DA204897.1 EST 1 840 81704.013.1-D_at −0.60318 0.60318333 7.253652 6E−11 81704.013 NM_203447.1 CQ723361.1 GENBANK_PATENT 1 841 54443.013.1-B_at 0.603178 0.60317758 7.253543 6E−11 54443.013 NM_018685.2 BX410228.2 EST 1 842 1410.005.1-T_at −0.60301 0.60300785 7.250335 6E−11 1410.005. NM_001885.1 BM702557.1 EST 1 843 25925.009.1-T_at −0.60288 0.60287704 7.247864 6E−11 25925.009 NM_015461.1 DB064380.1 EST 1 844 3204.001.1-T_at −0.60272 0.60272058 7.24491 6E−11 3204.001. NM_006896.3 BX104300.1 EST 1 845 29997.012.1-F_at −0.60268 0.60268472 7.244233 7E−11 29997.012 NM_015710.3 BG746448.1 EST 1 846 2.005.1-C_at −0.60255 0.60254732 7.24164 7E−11 2.005.1 NM_000014.4 BI493707.1 EST 1 847 140885.011.1-F −0.60254 0.60254281 7.241555 7E−11 140885.01 NM_080792.2 BM041242.1 EST 1 848 7153.002.3-F_at 0.602528 0.60252816 7.241278 7E−11 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 849 1063.002.1-F_at 0.602485 0.60248476 7.24046 7E−11 1063.002. NM_016343.3 CQ728087.1 GENBANK_PATENT 1 850 10144.021.1-F_at −0.60221 0.60221389 7.235351 7E−11 10144.021 NM_014883.2 BG434219.1 EST 1 851 8404.025.1-E_at −0.60217 0.60217399 7.234599 7E−11 8404.025. NM_004684.2 DB086831.1 EST 1 852 6876.020.1-B_at −0.60216 0.60215903 7.234317 7E−11 6876.020. NM_001001522. BM921237.1 EST 1 853 7170.006.1-C_at 0.601994 0.6019941 7.231209 7E−11 7170.006. NM_153649.2 DB003864.1 EST 1 854 10051.016.1-T_at 0.601783 0.60178293 7.227232 7E−11 10051.016 NM_001002799. DB062440.1 EST 1 855 5288.001.2-D_at −0.60173 0.6017334 7.2263 7E−11 5288.001. NM_004570.2 CQ720591.1 GENBANK_PATENT 1 856 7018.029.1-T_at −0.60153 0.60152604 7.222397 7E−11 7018.029. NM_001063.2 AV656085.1 EST 1 857 5627.002.1-B_at −0.60134 0.6013408 7.218913 7E−11 5627.002. NM_000313.1 CQ731592.1 GENBANK_PATENT 1 858 57447.037.1-T_at −0.60118 0.60117663 7.215826 7E−11 57447.037 NM_201535.1 BF793156.1 EST 1 859 4147.005.2-D_at −0.60084 0.60084391 7.209576 8E−11 4147.005. NM_002380.3 CQ716197.1 GENBANK_PATENT 1 860 8404.023.1-T_at −0.60074 0.6007351 7.207533 8E−11 8404.023. NM_004684.2 BX463355.2 EST 1 861 3872.006.1-D_at −0.60063 0.60063372 7.20563 8E−11 3872.006. NM_000422.1 BM017443.1 EST 1 862 399687.001.1-C −0.60061 0.60060752 7.205138 8E−11 399687.00 NM_078471.3 BM922301.1 EST 2 863 3815.002.4-D_at −0.60047 0.60047483 7.202648 8E−11 3815.002. NM_000222.1 CQ719901.1 GENBANK_PATENT 1 864 59.034.2-B_at −0.60033 0.60033475 7.200021 8E−11 59.034.2 — — — — 865 8404.035.1-T_at −0.60027 0.60026583 7.198729 8E−11 8404.035. NM_004684.2 BG716198.1 EST 1 866 8404.030.1-T_at −0.60022 0.60021743 7.197822 8E−11 8404.030. NM_004684.2 CD357736.1 EST 1 867 54997.002.2-T_at −0.60016 0.60015635 7.196677 8E−11 54997.002 NM_017899.1 CQ729176.1 GENBANK_PATENT 1 868 57561.001.1-F_at −0.6001 0.60010368 7.19569 8E−11 57561.001 NM_020801.1 BQ428339.1 EST 1 869 8404.031.1-T_at −0.6 0.59999606 7.193674 8E−11 8404.031. NM_004684.2 BP327616.1 EST 1 870 2.025.1-E_at −0.59999 0.59998752 7.193514 8E−11 2.025.1 NM_000014.4 DB288732.1 EST 1 871 699.002.1-F_at 0.599982 0.59998236 7.193417 8E−11 699.002.1 NM_004336.2 CQ715813.1 GENBANK_PATENT 1 872 57447.041.1-F_at −0.59992 0.5999151 7.192157 8E−11 57447.041 NM_201535.1 DA295124.1 EST 1 873 9055.013.1-D_at 0.59986 0.59986038 7.191132 8E−11 9055.013. NM_003981.2 CN348395.1 EST 1 874 8404.008.1-D_at −0.59979 0.5997907 7.189828 8E−11 8404.008. NM_004684.2 DA342341.1 EST 1 875 7018.028.1-T_at −0.59975 0.59975341 7.189129 8E−11 7018.028. NM_001063.2 BX537660.1 mRNA 1 876 2568.005.1-T_at −0.59968 0.59967705 7.1877 8E−11 2568.005. NM_014211.1 AK055205.1 mRNA 11 877 10051.005.3-T_at 0.599532 0.59953164 7.184979 9E−11 10051.005 NM_001002799. BU183025.1 EST 1 878 2568.002.2-T_at −0.59944 0.59943802 7.183228 9E−11 2568.002. NM_014211.1 DB235581.1 EST 1 879 4147.004.1-F_at −0.59921 0.59921316 7.179023 9E−11 4147.004. NM_002380.3 AX675291.1 GENBANK_PATENT 1 880 2938.001.1-T_at −0.59919 0.59919321 7.17865 9E−11 2938.001. NM_145740.2 AV683456.1 EST 1 881 1308.007.1-E_at −0.59902 0.59902115 7.175435 9E−11 1308.007. NM_130778.1 BF916393.1 EST 1 882 2982.012.1-T_at −0.59882 0.59881603 7.171604 9E−11 2982.012. NM_000856.2 BC012627.1 mRNA 2 883 8404.028.1-D_at −0.59877 0.5987733 7.170806 9E−11 8404.028. NM_004684.2 CQ727530.1 GENBANK_PATENT 1 884 7373.001.2-B_at −0.5986 0.598602 7.167609 9E−11 7373.001. NM_021110.1 DB089175.1 EST 1 885 2893.002.2-B_at −0.59834 0.59834456 7.162807 1E−10 2893.002. NM_000829.1 DA365406.1 EST 1 886 116369.006.4-C −0.59832 0.59831944 7.162338 1E−10 116369.00 NM_052961.2 AX480884.1 GENBANK_PATENT 1 887 6304.007.1-T_at −0.59819 0.59819347 7.15999 1E−10 6304.007. NM_002971.2 DB141052.1 EST 1 888 2335.035.1-T_at 0.597963 0.5979628 7.155692 1E−10 2335.035. NM_212482.1 CX755647.1 EST 1 889 4751.002.1-T_at 0.597837 0.59783662 7.153342 1E−10 4751.002. NM_002497.2 BI464450.1 EST 1 890 64151.001.2-T_at 0.597704 0.59770416 7.150876 1E−10 64151.001 NM_022346.3 CQ729716.1 GENBANK_PATENT 2 891 29089.003.1-T_at 0.597695 0.59769515 7.150708 1E−10 29089.003 NM_014176.1 AV740591.1 EST 1 892 59.031.1-B_at −0.59762 0.59761835 7.149279 1E−10 59.031.1 NM_001613.1 BG197213.1 EST 19 893 7018.025.1-T_at −0.59758 0.59757801 7.148528 1E−10 7018.025. NM_001063.2 BE971065.1 EST 1 894 3860.008.1-T_at −0.59747 0.5974712 7.146541 1E−10 3860.008. NM_153490.1 DA668693.1 EST 1 895 5858.003.3-F_at −0.59734 0.5973382 7.144067 1E−10 5858.003. NM_002864.1 AX512279.1 GENBANK_PATENT 2 896 8404.009.1-C_at −0.59725 0.59725088 7.142444 1E−10 8404.009. NM_004684.2 BP258993.1 EST 1 897 7169.022.1-T_at −0.59719 0.59718906 7.141295 1E−10 7169.022. NM_213674.1 BG385598.1 EST 1 898 25925.006.1-T_at −0.59714 0.59714283 7.140436 1E−10 25925.006 NM_015461.1 DB276803.1 EST 1 899 59.049.1-F_at −0.59713 0.59712525 7.140109 1E−10 59.049.1 — — — — 900 5284.003.1-T_at −0.59709 0.59708796 7.139416 1E−10 5284.003. NM_002644.2 BP220016.1 EST 1 901 2982.002.1-F_at −0.59705 0.59705092 7.138728 1E−10 2982.002. NM_000856.2 BP199345.1 EST 1 902 2568.002.1-T_at −0.59693 0.59693461 7.136567 1E−10 2568.002. NM_014211.1 DB235581.1 EST 1 903 301.004.1-B_at −0.59688 0.59688305 7.135609 1E−10 301.004.1 NM_000700.1 DB194639.1 EST 1 904 25925.011.1-F_at −0.59665 0.59664856 7.131256 1E−10 25925.011 NM_015461.1 DA105762.1 EST 1 905 59.004.1-F_at −0.59647 0.59647098 7.127961 1E−10 59.004.1 NM_001613.1 CQ696293.1 GENBANK_PATENT 1 906 6289.002.1-B_at −0.59635 0.59634661 7.125655 1E−10 6289.002. NM_030754.2 AA345111.1 EST 1 907 244.003.1-C_at −0.59612 0.59612161 7.121484 1E−10 244.003.1 NM_001630.1 BM809869.1 EST 1 908 11065.008.1-C_at 0.595877 0.59587676 7.116948 1E−10 11065.008 NM_181802.1 NM_181800.1 REFSEQ 5 909 7091.006.1-T_at −0.59586 0.59586302 7.116693 1E−10 7091.006. NM_007005.3 AK057236.1 mRNA 1 910 79608.009.1-F_at −0.59581 0.59580998 7.115711 1E−10 79608.009 NM_024557.2 CA406619.1 EST 1 911 9413.002.1-T_at −0.5958 0.59580106 7.115546 1E−10 9413.002. NM_004816.2 AW779892.1 EST 1 912 7431.064.1-C_at −0.59575 0.59575257 7.114648 1E−10 7431.064. NM_003380.2 BE728213.1 EST 1 913 8404.029.1-E_at −0.5957 0.59569505 7.113583 1E−10 8404.029. NM_004684.2 AA384658.1 EST 1 914 6876.020.1-T_at −0.59541 0.59541268 7.108359 1E−10 6876.020. NM_001001522. BM921237.1 EST 1 915 301.005.1-T_at −0.59539 0.59538592 7.107864 1E−10 301.005.1 NM_000700.1 AU139656.1 EST 7 916 9055.014.1-T_at 0.59529 0.5952897 7.106085 1E−10 9055.014. NM_003981.2 BE300335.1 EST 1 917 4281.023.1-T_at −0.5952 0.59520125 7.104449 1E−10 4281.023. NM_033290.1 AY539976.1 mRNA 1 918 3868.005.1-D_at −0.59519 0.59519189 7.104276 1E−10 3868.005. NM_005557.2 BG682632.1 EST 1 919 1062.001.6-B_at 0.595002 0.59500239 7.100775 1E−10 1062.001. NM_001813.2 CQ715352.1 GENBANK_PATENT 1 920 5858.005.1-T_at −0.59493 0.5949259 7.099362 1E−10 5858.005. NM_002864.1 DB040351.1 EST 1 921 51201.007.1-F_at −0.59491 0.59490972 7.099063 1E−10 51201.007 NM_016353.2 BF541714.1 EST 1 922 4240.001.1-B_at −0.59478 0.59477936 7.096655 1E−10 4240.001. NM_005928.1 BF525404.1 EST 1 923 8404.029.1-T_at −0.59477 0.59477341 7.096546 1E−10 8404.029. NM_004684.2 AA384658.1 EST 1 924 9413.001.1-T_at −0.59469 0.59468964 7.094999 1E−10 9413.001. NM_004816.2 DA824091.1 EST 1 925 9768.005.1-T_at 0.59458 0.59458041 7.092983 1E−10 9768.005. NM_014736.4 BG529193.1 EST 13 926 11197.001.1-T_at −0.59454 0.59454222 7.092279 1E−10 11197.001 NM_007191.2 W37154.1 EST 1 927 6285.002.1-T_at −0.59451 0.59450684 7.091626 1E−10 6285.002. NM_006272.1 BQ435930.1 EST 1 928 2335.006.2-F_at 0.594359 0.59435947 7.088907 1E−10 2335.006. NM_212482.1 CX785805.1 EST 1 929 7169.001.1-C_at −0.59424 0.59424202 7.086742 1E−10 7169.001. NM_213674.1 BM809268.1 EST 4 930 9493.004.1-T_at 0.594108 0.59410838 7.084278 1E−10 9493.004. NM_138555.1 BM792243.1 EST 1 931 4601.014.1-T_at −0.59408 0.59408377 7.083825 1E−10 4601.014. NM_130439.3 AX885544.1 GENBANK_PATENT 1 932 51203.002.2-F_at 0.593876 0.59387576 7.079993 1E−10 51203.002 NM_016359.2 AL561514.3 EST 1 933 7018.022.1-F_at −0.59374 0.593741 7.077512 1E−10 7018.022. NM_001063.2 T74625.1 EST 1 934 4288.009.1-F_at 0.593675 0.59367472 7.076291 1E−10 4288.009. NM_002417.2 BG106198.1 EST 1 935 8321.004.1-D_at −0.59365 0.59365154 7.075865 1E−10 8321.004. NM_003505.1 AA249884.1 EST 1 936 8564.004.1-E_at −0.59345 0.59344954 7.072148 1E−10 8564.004. NM_003679.2 AV646525.1 EST 3 937 7169.022.1-C_at −0.59343 0.59343079 7.071803 1E−10 7169.022. NM_213674.1 BG385598.1 EST 1 938 29127.013.1-T_at 0.593386 0.59338577 7.070975 1E−10 29127.013 NM_013277.2 DA812983.1 EST 1 939 2.018.1-B_at −0.59317 0.59316746 7.066961 1E−10 2.018.1 NM_000014.4 DB090657.1 EST 1 940 2.005.1-D_at −0.59314 0.59313787 7.066417 1E−10 2.005.1 NM_000014.4 BI493707.1 EST 1 941 1058.004.2-T_at 0.5931 0.59310026 7.065726 2E−10 1058.004. NM_001809.2 AL555851.3 EST 1 942 2232.014.1-C_at −0.59284 0.59284081 7.060959 2E−10 2232.014. NM_004110.2 DB052280.1 EST 1 943 23650.005.1-E_at −0.59283 0.59282614 7.06069 2E−10 23650.005 NM_058193.1 DB116882.1 EST 1 944 5621.002.2-T_at −0.59271 0.59270593 7.058482 2E−10 5621.002. NM_000311.2 DA151722.1 EST 1 945 51201.005.1-B_at −0.5927 0.59270147 7.058401 2E−10 51201.005 NM_016353.2 DA655803.1 EST 1 946 667.022.1-F_at −0.59265 0.59265274 7.057506 2E−10 667.022.1 NM_183380.1 AX683196.1 GENBANK_PATENT 1 947 54443.012.1-C_at 0.592546 0.59254619 7.055551 2E−10 54443.012 NM_018685.2 BG167656.1 EST 1 948 25802.003.1-C_at −0.59251 0.59250565 7.054807 2E−10 25802.003 NM_012134.1 BC001755.1 mRNA 1 949 3479.003.1-T_at −0.59248 0.59247776 7.054295 2E−10 3479.003. NM_000618.2 U40870.1 mRNA 4 950 94274.003.1-D_at −0.59243 0.59242603 7.053346 2E−10 94274.003 NM_033256.1 AB056509.1 mRNA 1 951 84668.003.1-T_at −0.59229 0.5922945 7.050934 2E−10 84668.003 NM_032581.2 CQ727246.1 GENBANK_PATENT 1 952 22974.008.1-E_at 0.592131 0.59213066 7.04793 2E−10 22974.008 NM_012112.4 CQ727779.1 GENBANK_PATENT 1 953 55656.007.3-B_at 0.592104 0.59210361 7.047434 2E−10 55656.007 NM_017864.2 CQ715091.1 GENBANK_PATENT 1 954 29127.002.1-T_at 0.591958 0.59195836 7.044773 2E−10 29127.002 NM_013277.2 AB030251.1 mRNA 44 955 4281.012.2-T_at −0.59195 0.59194704 7.044565 2E−10 4281.012. NM_033290.1 CN298826.1 EST 1 956 2335.013.1-B_at 0.591874 0.59187364 7.043221 2E−10 2335.013. NM_212482.1 AL551632.3 EST 2 957 79627.003.1-B_at −0.59185 0.59184571 7.042709 2E−10 79627.003 NM_024576.3 CQ725357.1 GENBANK_PATENT 1 958 2982.014.1-T_at −0.5918 0.5918033 7.041932 2E−10 2982.014. NM_000856.2 BM469193.1 EST 1 959 2335.053.1-T_at 0.591795 0.59179543 7.041788 2E−10 2335.053. NM_212482.1 BX380854.2 EST 1 960 667.001.1-F_at −0.59167 0.5916653 7.039406 2E−10 667.001.1 NM_183380.1 BG387402.1 EST 2 961 8404.030.1-B_at −0.59165 0.59165467 7.039211 2E−10 8404.030. NM_004684.2 CD357736.1 EST 1 962 2335.025.1-C_at 0.591645 0.59164549 7.039043 2E−10 2335.025. NM_212482.1 CQ715726.1 GENBANK_PATENT 3 963 140885.010.3-D −0.59164 0.59164248 7.038988 2E−10 140885.01 NM_080792.2 CQ728313.1 GENBANK_PATENT 1 964 55366.001.2-F_at −0.59159 0.59158568 7.037948 2E−10 55366.001 NM_018490.1 CQ722924.1 GENBANK_PATENT 1 965 7169.015.1-D_at −0.59148 0.59147642 7.035949 2E−10 7169.015. NM_213674.1 DB291177.1 EST 1 966 57447.002.1-B_at −0.59141 0.59140949 7.034725 2E−10 57447.002 NM_201535.1 BF526188.1 EST 1 967 22974.008.1-T_at 0.591372 0.59137204 7.034039 2E−10 22974.008 NM_012112.4 CQ727779.1 GENBANK_PATENT 1 968 6876.011.1-C_at −0.59135 0.59135455 7.033719 2E−10 6876.011. NM_001001522. AW956430.1 EST 1 969 4281.008.2-D_at −0.59123 0.591231 7.03146 2E−10 4281.008. NM_033290.1 AY539984.1 mRNA 1 970 59.008.1-T_at −0.59118 0.59117565 7.030448 2E−10 59.008.1 NM_001613.1 BP373197.1 EST 1 971 23266.008.1-F_at −0.59109 0.59109236 7.028926 2E−10 23266.008 NM_012302.2 CQ799210.1 GENBANK_PATENT 1 972 2568.003.2-T_at −0.59089 0.59089352 7.025292 2E−10 2568.003. NM_014211.1 CD696885.1 EST 1 973 5311.003.1-T_at −0.59073 0.59073163 7.022336 2E−10 5311.003. NM_000297.2 DA153606.1 EST 1 974 6304.011.1-T_at −0.59052 0.59052216 7.018512 2E−10 6304.011. NM_002971.2 BP359118.1 EST 1 975 3861.008.1-B_at −0.59048 0.59048159 7.017772 2E−10 3861.008. NM_000526.3 BE184532.1 EST 1 976 7018.013.1-B_at −0.59035 0.59035214 7.01541 2E−10 7018.013. NM_001063.2 AX147484.1 GENBANK_PATENT 1 977 8404.005.1-F_at −0.59023 0.59022734 7.013134 2E−10 8404.005. NM_004684.2 DA763956.1 EST 1 978 7170.027.1-C_at 0.590216 0.59021624 7.012932 2E−10 7170.027. NM_153649.2 BQ959117.1 EST 1 979 8404.023.1-C_at −0.59009 0.59009089 7.010646 2E−10 8404.023. NM_004684.2 BX463355.2 EST 1 980 7373.007.1-C_at −0.59009 0.59009037 7.010637 2E−10 7373.007. NM_021110.1 Y11710.1 mRNA 1 981 1410.009.1-T_at −0.5899 0.5898986 7.007142 2E−10 1410.009. NM_001885.1 BQ437433.1 EST 2 982 79745.004.3-D_at −0.58947 0.58947272 6.999388 2E−10 79745.004 NM_024692.3 AK057267.1 mRNA 3 983 24137.004.1-T_at 0.589449 0.5894492 6.99896 2E−10 24137.004 NM_012310.2 BQ055679.1 EST 1 984 6241.013.1-B_at 0.589418 0.58941768 6.998387 2E−10 6241.013. NM_001034.1 BG261296.1 EST 1 985 1410.001.1-T_at −0.5894 0.58939515 6.997977 2E−10 1410.001. NM_001885.1 W40377.1 EST 1 986 4781.015.2-B_at −0.58938 0.5893752 6.997614 2E−10 4781.015. NM_005596.1 DN995118.1 EST 1 987 72.002.1-T_at −0.58937 0.58936787 6.99748 2E−10 72.002.1 NM_001615.3 BP372072.1 EST 2 988 4833.004.1-D_at 0.589279 0.58927851 6.995855 2E−10 4833.004. NM_005009.2 BG478602.1 EST 8 989 57447.024.1-D_at −0.58924 0.58924443 6.995235 2E−10 57447.024 NM_201535.1 DA566498.1 EST 1 990 2982.013.2-T_at −0.5892 0.58920321 6.994486 2E−10 2982.013. NM_000856.2 CF594362.1 EST 1 991 79971.012.1-T_at −0.58907 0.5890694 6.992053 2E−10 79971.012 NM_001002292. BG702604.1 EST 1 992 8404.028.3-C_at −0.589 0.58899948 6.990782 2E−10 8404.028. NM_004684.2 CQ727530.1 GENBANK_PATENT 1 993 4638.011.1-E_at −0.58897 0.58897325 6.990305 2E−10 4638.011. NM_053025.2 DB267860.1 EST 1 994 7169.004.1-C_at −0.58895 0.58894617 6.989813 2E−10 7169.004. NM_213674.1 BG027526.1 EST 1 995 4288.004.1-F_at 0.588788 0.58878813 6.986942 2E−10 4288.004. NM_002417.2 BP232141.1 EST 1 996 59.012.2-C_at −0.58875 0.58875113 6.98627 2E−10 59.012.2 NM_001613.1 AL546033.3 EST 1 997 301.008.1-B_at −0.5887 0.58869814 6.985308 2E−10 301.008.1 NM_000700.1 CD688703.1 EST 1 998 4281.012.1-T_at −0.58864 0.58863805 6.984217 2E−10 4281.012. NM_033290.1 CN298826.1 EST 1 999 2335.016.1-F_at 0.58863 0.58863031 6.984076 2E−10 2335.016. NM_212482.1 CQ875357.1 GENBANK_PATENT 281 1000 259266.003.1-C 0.588552 0.58855227 6.98266 2E−10 259266.00 NM_018136.2 CB217235.1 EST 1 1001 9055.020.1-T_at 0.588545 0.58854487 6.982525 2E−10 9055.020. NM_003981.2 BP363287.1 EST 1 1002 7091.016.1-T_at −0.58837 0.58836788 6.979313 2E−10 7091.016. NM_007005.3 DA323941.1 EST 1 1003 59.023.1-T_at −0.5882 0.58819673 6.976209 2E−10 59.023.1 NM_001613.1 DB248573.1 EST 1 1004 57162.010.1-B_at −0.58814 0.58813698 6.975125 2E−10 57162.010 NM_020651.2 DB241492.1 EST 1 1005 4781.002.2-D_at −0.58809 0.58808634 6.974207 2E−10 4781.002. NM_005596.1 BF688131.1 EST 2 1006 6122.037.1-T_at −0.58806 0.58805933 6.973718 2E−10 6122.037. NM_000967.3 BP417473.1 EST 1 1007 4240.015.1-B_at −0.58803 0.58803047 6.973195 2E−10 4240.015. NM_005928.1 AA021047.1 EST 1 1008 59.034.1-T_at −0.58783 0.58782732 6.969513 2E−10 59.034.1 — — — — 1009 8404.004.2-D_at −0.58782 0.58782345 6.969443 2E−10 8404.004. NM_004684.2 DA589023.1 EST 1 1010 9413.001.2-T_at −0.58777 0.5877726 6.968522 2E−10 9413.001. NM_004816.2 DA824091.1 EST 1 1011 2.005.1-F_at −0.58772 0.58771984 6.967566 2E−10 2.005.1 NM_000014.4 BI493707.1 EST 1 1012 6304.002.1-T_at −0.58771 0.58770553 6.967307 2E−10 6304.002. NM_002971.2 BC001744.1 mRNA 33 1013 3852.005.1-C_at −0.58768 0.58768033 6.966851 2E−10 3852.005. NM_000424.2 R47851.1 EST 1 1014 7170.027.1-B_at 0.587642 0.58764175 6.966152 2E−10 7170.027. NM_153649.2 BQ959117.1 EST 1 1015 301.013.1-T_at −0.5873 0.58729565 6.959888 2E−10 301.013.1 NM_000700.1 BF130804.1 EST 1 1016 6304.012.1-F_at −0.58724 0.58724193 6.958916 2E−10 6304.012. NM_002971.2 BP359502.1 EST 1 1017 57447.051.2-T_at −0.58722 0.58721828 6.958489 2E−10 57447.051 NM_201535.1 BX460053.2 EST 1 1018 11065.005.1-C_at 0.587192 0.58719194 6.958012 2E−10 11065.005 NM_181802.1 CS138820.1 GENBANK_PATENT 2 1019 6422.002.1-F_at −0.58719 0.58719017 6.95798 2E−10 6422.002. NM_003012.3 AX565729.1 GENBANK_PATENT 3 1020 6241.013.1-F_at 0.587043 0.58704329 6.955324 3E−10 6241.013. NM_001034.1 BG261296.1 EST 1 1021 2335.032.1-T_at 0.58699 0.58699048 6.95437 3E−10 2335.032. NM_212482.1 DA647475.1 EST 1 1022 11065.005.2-T_at 0.586925 0.5869248 6.953183 3E−10 11065.005 NM_181802.1 CS138820.1 GENBANK_PATENT 2 1023 2335.028.1-D_at 0.586789 0.58678853 6.95072 3E−10 2335.028. NM_212482.1 AJ320525.1 mRNA 1 1024 29997.016.1-F_at −0.58672 0.58671564 6.949404 3E−10 29997.016 NM_015710.3 BF686243.1 EST 1 1025 7018.014.1-T_at −0.58659 0.58658835 6.947105 3E−10 7018.014. NM_001063.2 AX147483.1 GENBANK_PATENT 1 1026 1410.011.1-E_at −0.58657 0.58657023 6.946778 3E−10 1410.011. NM_001885.1 BI561839.1 EST 1 1027 7170.040.1-E_at 0.586568 0.58656826 6.946742 3E−10 7170.040. NM_153649.2 BG283654.1 EST 1 1028 6289.002.2-F_at −0.5864 0.58639668 6.943645 3E−10 6289.002. NM_030754.2 AA345111.1 EST 1 1029 7373.003.4-C_at −0.58637 0.58636622 6.943095 3E−10 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 1030 7170.041.1-E_at 0.58605 0.58604991 6.93739 3E−10 7170.041. NM_153649.2 BF967161.1 EST 4 1031 128553.003.1-B −0.586 0.58599544 6.936408 3E−10 128553.00 NM_173485.2 BP394387.1 EST 1 1032 4094.002.1-D_at −0.58596 0.58595549 6.935688 3E−10 4094.002. NM_001031804. BI458211.1 EST 1 1033 7113.011.1-T_at −0.5859 0.58589757 6.934644 3E−10 7113.011. NM_005656.2 DA868984.1 EST 1 1034 7170.002.1-C_at 0.585876 0.58587638 6.934262 3E−10 7170.002. NM_153649.2 AL547448.3 EST 1 1035 8404.017.2-T_at −0.58585 0.58584564 6.933708 3E−10 8404.017. NM_004684.2 CD001002.1 EST 1 1036 59.029.1-T_at −0.58564 0.58563959 6.929996 3E−10 59.029.1 NM_001613.1 AL540709.3 EST 1 1037 29089.001.1-T_at 0.585601 0.58560082 6.929298 3E−10 29089.001 NM_014176.1 CA495294.1 EST 2 1038 358.012.1-T_at −0.5856 0.58559702 6.929229 3E−10 358.012.1 NM_198098.1 AX597685.1 GENBANK_PATENT 1 1039 9134.001.1-B_at 0.585561 0.58556099 6.92858 3E−10 9134.001. NM_057749.1 BC007015.1 mRNA 1 1040 2335.013.1-C_at 0.585476 0.58547585 6.927047 3E−10 2335.013. NM_212482.1 AL551632.3 EST 2 1041 1410.010.1-T_at −0.58543 0.58542981 6.926219 3E−10 1410.010. NM_001885.1 AJ710474.1 EST 2 1042 2327.003.4-F_at −0.58542 0.58541593 6.925969 3E−10 2327.003. NM_001460.2 AI223310.1 EST 1 1043 59.042.1-T_at −0.58536 0.58536256 6.925008 3E−10 59.042.1 NM_001613.1 EH_001613.8 PREDICTED 1 1044 6304.007.2-T_at −0.58518 0.58517695 6.921669 3E−10 6304.007. NM_002971.2 DB141052.1 EST 1 1045 8404.031.1-B_at −0.58502 0.5850183 6.918815 3E−10 8404.031. NM_004684.2 BP327616.1 EST 1 1046 6289.001.1-F_at −0.58499 0.58499281 6.918357 3E−10 6289.001. NM_030754.2 CR744712.1 EST 1 1047 1410.006.1-T_at −0.58487 0.58487369 6.916216 3E−10 1410.006. NM_001885.1 BF670917.1 EST 1 1048 80034.004.1-T_at −0.58483 0.58482793 6.915393 3E−10 80034.004 NM_024969.2 DA786544.1 EST 1 1049 1410.008.1-T_at −0.58477 0.58476949 6.914343 3E−10 1410.008. NM_001885.1 R68496.1 EST 1 1050 57447.051.2-D_at −0.5847 0.58469568 6.913017 3E−10 57447.051 NM_201535.1 BX460053.2 EST 1 1051 7170.016.3-B_at 0.58466 0.58466041 6.912384 3E−10 7170.016. NM_153649.2 BF575596.1 EST 1 1052 4240.001.1-C_at −0.58464 0.58463983 6.912014 3E−10 4240.001. NM_005928.1 BF525404.1 EST 1 1053 6288.001.1-T_at −0.58463 0.58462773 6.911797 3E−10 6288.001. NM_199161.1 AX899121.1 GENBANK_PATENT 2 1054 7018.014.1-C_at −0.58462 0.58461793 6.911621 3E−10 7018.014. NM_001063.2 AX147483.1 GENBANK_PATENT 1 1055 8404.020.1-T_at −0.58456 0.58455592 6.910507 3E−10 8404.020. NM_004684.2 DA298626.1 EST 1 1056 6289.001.2-F_at −0.58442 0.58441549 6.907986 3E−10 6289.001. NM_030754.2 CR744712.1 EST 1 1057 6876.011.1-F_at −0.58434 0.58433766 6.906588 3E−10 6876.011. NM_001001522. AW956430.1 EST 1 1058 8404.031.1-C_at −0.5841 0.58410499 6.902414 3E−10 8404.031. NM_004684.2 BP327616.1 EST 1 1059 57447.010.1-T_at −0.58408 0.5840791 6.90195 3E−10 57447.010 NM_201535.1 BP349691.1 EST 1 1060 1410.007.2-C_at −0.58404 0.58404076 6.901262 3E−10 1410.007. NM_001885.1 BI548180.1 EST 1 1061 59.012.2-B_at −0.58397 0.58396561 6.899914 3E−10 59.012.2 NM_001613.1 AL546033.3 EST 1 1062 3459.005.1-T_at −0.58389 0.58388527 6.898474 3E−10 3459.005. NM_000416.1 BP259682.1 EST 1 1063 301.013.1-C_at −0.58378 0.58377547 6.896506 3E−10 301.013.1 NM_000700.1 BF130804.1 EST 1 1064 83539.001.1-D_at −0.58353 0.58353306 6.892163 3E−10 83539.001 NM_031422.1 BM919514.1 EST 1 1065 6288.004.1-F_at −0.58351 0.58351232 6.891792 3E−10 6288.004. NM_199161.1 BG567754.1 EST 3 1066 4781.016.1-E_at −0.58347 0.58347336 6.891094 3E−10 4781.016. NM_005596.1 DA518562.1 EST 1 1067 29997.012.1-E_at −0.58343 0.58343189 6.890351 3E−10 29997.012 NM_015710.3 BG746448.1 EST 1 1068 57447.021.1-T_at −0.5834 0.58339709 6.889728 3E−10 57447.021 NM_201535.1 BQ954948.1 EST 28 1069 3426.002.1-C_at −0.58304 0.58304119 6.88336 4E−10 3426.002. NM_000204.1 CQ718881.1 GENBANK_PATENT 1 1070 53829.001.2-T_at −0.58296 0.58295977 6.881904 4E−10 53829.001 NM_023914.2 NM_176894.1 REFSEQ 12 1071 2115.001.2-B_at −0.58274 0.58274226 6.878015 4E−10 2115.001. NM_004956.3 X87175.1 mRNA 1 1072 10051.008.1-T_at 0.58274 0.58274024 6.877979 4E−10 10051.008 NM_001002799. DA436898.1 EST 1 1073 1033.002.1-T_at 0.582723 0.58272336 6.877677 4E−10 1033.002. NM_005192.2 BG771524.1 EST 1 1074 2335.005.1-D_at 0.582597 0.58259651 6.875411 4E−10 2335.005. NM_212482.1 BX417388.2 EST 1 1075 7113.009.1-T_at −0.58253 0.58252547 6.874142 4E−10 7113.009. NM_005656.2 DA873416.1 EST 1 1076 3866.002.1-B_at −0.58251 0.58251356 6.873929 4E−10 3866.002. NM_002275.2 BG990007.1 EST 1 1077 140885.014.1-D −0.58226 0.58225938 6.869391 4E−10 140885.01 NM_080792.2 DR423079.1 EST 1 1078 7168.003.1-T_at −0.58216 0.58215776 6.867577 4E−10 7168.003. NM_001018020. AK092051.1 mRNA 25 1079 79608.001.1-T_at −0.58215 0.58214776 6.867399 4E−10 79608.001 NM_024557.2 CQ739424.1 GENBANK_PATENT 1 1080 79608.008.2-F_at −0.58205 0.58205249 6.865699 4E−10 79608.008 NM_024557.2 DA748988.1 EST 2 1081 1410.001.1-B_at −0.58186 0.58185842 6.862238 4E−10 1410.001. NM_001885.1 W40377.1 EST 1 1082 7113.010.1-T_at −0.5816 0.5816021 6.857669 4E−10 7113.010. NM_005656.2 DA460061.1 EST 1 1083 4781.014.2-B_at −0.5816 0.58160201 6.857667 4E−10 4781.014. NM_005596.1 DN918235.1 EST 1 1084 2335.016.1-E_at 0.581544 0.58154398 6.856633 4E−10 2335.016. NM_212482.1 CQ875357.1 GENBANK_PATENT 281 1085 11065.003.1-T_at 0.581391 0.58139079 6.853905 4E−10 11065.003 NM_181802.1 CS138819.1 GENBANK_PATENT 5 1086 3872.006.1-T_at −0.58132 0.58131729 6.852596 4E−10 3872.006. NM_000422.1 BM017443.1 EST 1 1087 3084.005.1-F_at −0.58129 0.58128817 6.852078 4E−10 3084.005. NM_013957.1 NM_013960.1 REFSEQ 2 1088 6285.003.1-T_at −0.5812 0.58120469 6.850591 4E−10 6285.003. NM_006272.1 BG765453.1 EST 2 1089 6876.016.2-F_at −0.58101 0.58100573 6.847051 4E−10 6876.016. NM_001001522. AB209555.1 mRNA 2 1090 8404.004.1-T_at −0.58099 0.58098676 6.846714 4E−10 8404.004. NM_004684.2 DA589023.1 EST 1 1091 54829.001.1-F_at 0.580792 0.58079186 6.843247 4E−10 54829.001 NM_017680.3 AK027359.1 mRNA 4 1092 8404.001.1-T_at −0.58046 0.58046456 6.83743 4E−10 8404.001. NM_004684.2 DA132781.1 EST 1 1093 9055.011.1-E_at 0.580443 0.58044278 6.837043 4E−10 9055.011. NM_003981.2 CX868839.1 EST 1 1094 6289.003.2-F_at −0.58043 0.58043238 6.836859 4E−10 6289.003. NM_030754.2 R83510.1 EST 1 1095 22974.007.1-T_at 0.580276 0.5802757 6.834076 4E−10 22974.007 NM_012112.4 AF287265.1 mRNA 213 1096 59.023.2-T_at −0.58018 0.58017715 6.832326 4E−10 59.023.2 NM_001613.1 DB248573.1 EST 1 1097 7169.015.1-T_at −0.58013 0.58013361 6.831554 4E−10 7169.015. NM_213674.1 DB291177.1 EST 1 1098 6289.002.1-F_at −0.58009 0.58008892 6.83076 4E−10 6289.002. NM_030754.2 AA345111.1 EST 1 1099 4288.008.1-B_at 0.580029 0.58002917 6.8297 4E−10 4288.008. NM_002417.2 BP235232.1 EST 1 1100 4781.007.1-B_at −0.5799 0.57989557 6.82733 5E−10 4781.007. NM_005596.1 BP350370.1 EST 1 1101 6876.023.1-T_at −0.57988 0.57988374 6.82712 5E−10 6876.023. NM_001001522. CN482091.1 EST 1 1102 9055.017.1-F_at 0.579678 0.57967782 6.823468 5E−10 9055.017. NM_003981.2 DB031145.1 EST 1 1103 7170.018.2-D_at 0.579645 0.5796446 6.822879 5E−10 7170.018. NM_153649.2 DB037267.1 EST 1 1104 4781.014.2-D_at −0.57948 0.57948256 6.820008 5E−10 4781.014. NM_005596.1 DN918235.1 EST 1 1105 7170.025.1-T_at 0.579385 0.5793851 6.818281 5E−10 7170.025. NM_153649.2 BE208737.1 EST 1 1106 7018.025.1-B_at −0.57934 0.57934031 6.817488 5E−10 7018.025. NM_001063.2 BE971065.1 EST 1 1107 10253.003.1-T_at −0.57928 0.5792786 6.816395 5E−10 10253.003 NM_005842.2 DA345721.1 EST 1 1108 57447.039.1-D_at −0.57924 0.57923531 6.815628 5E−10 57447.039 NM_201535.1 DA356658.1 EST 1 1109 59.022.1-T_at −0.5792 0.57920027 6.815007 5E−10 59.022.1 NM_001613.1 BQ881176.1 EST 6 1110 2982.015.1-F_at −0.57917 0.57917337 6.814531 5E−10 2982.015. NM_000856.2 CB049566.1 EST 1 1111 10124.004.2-F_at −0.57893 0.57892871 6.810201 5E−10 10124.004 NM_001037164. BU661374.1 EST 12 1112 6289.001.1-B_at −0.57871 0.57871022 6.806336 5E−10 6289.001. NM_030754.2 CR744712.1 EST 1 1113 7091.005.1-F_at −0.57865 0.57864807 6.805237 5E−10 7091.005. NM_007005.3 BC059405.1 mRNA 1 1114 501.006.1-B_at −0.57847 0.57847445 6.802168 5E−10 501.006.1 NM_001182.2 AI142140.1 EST 1 1115 1410.001.1-C_at −0.57836 0.57835697 6.800092 5E−10 1410.001. NM_001885.1 W40377.1 EST 1 1116 57447.021.1-C_at −0.57826 0.57825824 6.798348 5E−10 57447.021 NM_201535.1 BQ954948.1 EST 28 1117 244.012.1-B_at −0.57821 0.57821349 6.797558 5E−10 244.012.1 NM_001630.1 DA445163.1 EST 1 1118 7018.026.1-F_at −0.57794 0.57793533 6.792647 5E−10 7018.026. NM_001063.2 BM690655.1 EST 1 1119 3872.018.1-T_at −0.57791 0.57790767 6.792159 5E−10 3872.018. NM_000422.1 BP226405.1 EST 1 1120 10144.017.3-T_at −0.57781 0.57781025 6.79044 5E−10 10144.017 NM_014883.2 AX747234.1 GENBANK_PATENT 1 1121 11197.001.1-F_at −0.57764 0.57763981 6.787434 5E−10 11197.001 NM_007191.2 W37154.1 EST 1 1122 29127.007.1-B_at 0.577519 0.57751875 6.785299 6E−10 29127.007 NM_013277.2 DA362566.1 EST 1 1123 10010.004.1-F_at −0.57745 0.57744716 6.784037 6E−10 10010.004 NM_004180.2 BM750784.1 EST 1 1124 81704.013.1-C_at −0.57744 0.57744059 6.783922 6E−10 81704.013 NM_203447.1 CQ723361.1 GENBANK_PATENT 1 1125 4781.006.2-B_at −0.57742 0.57742143 6.783584 6E−10 4781.006. NM_005596.1 AK131233.1 mRNA 2 1126 7373.003.1-F_at −0.57736 0.57736415 6.782575 6E−10 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 1127 8404.009.1-D_at −0.57736 0.57735822 6.78247 6E−10 8404.009. NM_004684.2 BP258993.1 EST 1 1128 23092.004.1-T_at −0.57727 0.5772653 6.780833 6E−10 23092.004 NM_015071.2 DA211853.1 EST 1 1129 2335.002.1-F_at 0.577229 0.57722889 6.780192 6E−10 2335.002. NM_212482.1 AU118498.1 EST 26 1130 8404.031.1-F_at −0.5772 0.57720205 6.779719 6E−10 8404.031. NM_004684.2 BP327616.1 EST 1 1131 6304.006.2-T_at −0.57715 0.57714631 6.778737 6E−10 6304.006. NM_002971.2 BI462843.1 EST 1 1132 1410.008.1-E_at −0.57711 0.57710598 6.778027 6E−10 1410.008. NM_001885.1 R68496.1 EST 1 1133 9055.019.1-F_at 0.577072 0.57707199 6.777428 6E−10 9055.019. NM_003981.2 AL079833.1 EST 1 1134 1398.001.1-D_at −0.57704 0.577042 6.7769 6E−10 1398.001. NM_016823.2 BE898353.1 EST 1 1135 57447.051.1-E_at −0.57704 0.57703991 6.776863 6E−10 57447.051 NM_201535.1 BX460053.2 EST 1 1136 339965.001.2-B −0.57702 0.57701808 6.776479 6E−10 339965.00 NM_178555.2 BC086869.1 mRNA 5 1137 7113.001.1-C_at −0.57697 0.57697321 6.775689 6E−10 7113.001. NM_005656.2 CQ976407.1 GENBANK_PATENT 1 1138 4240.009.1-D_at −0.57692 0.57692271 6.7748 6E−10 4240.009. NM_005928.1 BG829936.1 EST 2 1139 7153.002.4-B_at 0.576735 0.57673523 6.771501 6E−10 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 1140 7169.004.1-D_at −0.57658 0.57658017 6.768774 6E−10 7169.004. NM_213674.1 BG027526.1 EST 1 1141 1410.001.1-D_at −0.57648 0.57647869 6.766989 6E−10 1410.001. NM_001885.1 W40377.1 EST 1 1142 59.015.2-B_at −0.57634 0.57634377 6.764618 6E−10 59.015.2 NM_001613.1 BP372009.1 EST 1 1143 4833.010.1-T_at 0.576197 0.57619729 6.762044 6E−10 4833.010. NM_005009.2 BU532120.1 EST 1 1144 7169.022.1-B_at −0.57611 0.57611084 6.760525 6E−10 7169.022. NM_213674.1 BG385598.1 EST 1 1145 11065.005.1-T_at 0.576067 0.57606684 6.759752 6E−10 11065.005 NM_181802.1 CS138820.1 GENBANK_PATENT 2 1146 7170.018.2-T_at 0.575994 0.57599361 6.758466 6E−10 7170.018. NM_153649.2 DB037267.1 EST 1 1147 79971.013.2-F_at −0.57599 0.57598932 6.758391 6E−10 79971.013 NM_001002292. DA878291.1 EST 1 1148 152015.005.2-F −0.5759 0.57589713 6.756772 6E−10 152015.00 NM_001012337. CQ732372.1 GENBANK_PATENT 1 1149 4288.005.1-D_at 0.575849 0.57584855 6.75592 6E−10 4288.005. NM_002417.2 BM455229.1 EST 1 1150 8404.002.1-T_at −0.57584 0.57584028 6.755774 6E−10 8404.002. NM_004684.2 BP383384.1 EST 1 1151 6441.004.1-E_at −0.57578 0.5757767 6.754659 6E−10 6441.004. NM_003019.4 BG542824.1 EST 1 1152 6122.046.1-B_at −0.57577 0.57577128 6.754563 6E−10 6122.046. NM_000967.3 BM019962.1 EST 1 1153 115908.002.1-T 0.575641 0.57564097 6.752277 6E−10 115908.00 NM_138455.2 AF395488.1 mRNA 1 1154 9481.001.1-F_at −0.57564 0.5756408 6.752274 6E−10 9481.001. NM_004277.2 BC033091.1 mRNA 2 1155 8404.008.1-T_at −0.57561 0.57561259 6.751779 6E−10 8404.008. NM_004684.2 DA342341.1 EST 1 1156 1410.007.1-D_at −0.57559 0.57559279 6.751432 6E−10 1410.007. NM_001885.1 BI548180.1 EST 1 1157 8404.030.1-C_at −0.57555 0.57554678 6.750625 6E−10 8404.030. NM_004684.2 CD357736.1 EST 1 1158 57447.039.1-T_at −0.57552 0.57551972 6.75015 6E−10 57447.039 NM_201535.1 DA356658.1 EST 1 1159 4147.004.1-E_at −0.57546 0.57545554 6.749025 7E−10 4147.004. NM_002380.3 AX675291.1 GENBANK_PATENT 1 1160 2335.024.2-F_at 0.575372 0.57537228 6.747565 7E−10 2335.024. NM_212482.1 CQ731573.1 GENBANK_PATENT 1 1161 891.007.1-T_at 0.575369 0.57536931 6.747513 7E−10 891.007.1 NM_031966.2 BT020128.1 mRNA 1 1162 2335.002.1-T_at 0.575308 0.57530785 6.746436 7E−10 2335.002. NM_212482.1 AU118498.1 EST 26 1163 8404.017.1-T_at −0.57528 0.5752762 6.745881 7E−10 8404.017. NM_004684.2 CD001002.1 EST 1 1164 57451.004.1-B_at −0.57522 0.57521923 6.744883 7E−10 57451.004 XM_931456.1 AK056053.1 mRNA 5 1165 8404.001.1-F_at −0.57518 0.57517525 6.744112 7E−10 8404.001. NM_004684.2 DA132781.1 EST 1 1166 8626.006.2-B_at −0.57508 0.57507892 6.742424 7E−10 8626.006. NM_003722.3 CB049427.1 EST 1 1167 2335.025.1-T_at 0.575019 0.5750189 6.741373 7E−10 2335.025. NM_212482.1 CQ715726.1 GENBANK_PATENT 3 1168 6286.001.1-T_at 0.574986 0.57498586 6.740794 7E−10 6286.001. NM_005980.2 BM850288.1 EST 1 1169 10580.012.1-C_at −0.57498 0.57497814 6.740659 7E−10 10580.012 NM_015385.2 AX879149.1 GENBANK_PATENT 1 1170 23321.014.1-T_at −0.57485 0.57484627 6.73835 7E−10 23321.014 NM_015271.2 CQ723480.1 GENBANK_PATENT 1 1171 2824.001.2-B_at −0.57481 0.57480725 6.737667 7E−10 2824.001. NM_001001994. CQ717842.1 GENBANK_PATENT 1 1172 29127.022.1-T_at 0.574796 0.57479644 6.737478 7E−10 29127.022 NM_013277.2 DB065206.1 EST 1 1173 6289.003.1-F_at −0.57455 0.57455392 6.733234 7E−10 6289.003. NM_030754.2 R83510.1 EST 1 1174 7170.005.2-B_at 0.574471 0.57447114 6.731785 7E−10 7170.005. NM_153649.2 DA762962.1 EST 1 1175 54443.011.1-F_at 0.574461 0.57446085 6.731605 7E−10 54443.011 NM_018685.2 DA244113.1 EST 1 1176 29127.019.1-T_at 0.574322 0.57432168 6.729172 7E−10 29127.019 NM_013277.2 DA779708.1 EST 1 1177 6288.004.1-T_at −0.57432 0.57432014 6.729145 7E−10 6288.004. NM_199161.1 BG567754.1 EST 3 1178 29997.008.1-C_at −0.57411 0.57411065 6.725483 7E−10 29997.008 NM_015710.3 BI871613.1 EST 1 1179 57447.039.1-B_at −0.57407 0.57406597 6.724703 7E−10 57447.039 NM_201535.1 DA356658.1 EST 1 1180 3872.007.1-B_at −0.57388 0.573875 6.721367 7E−10 3872.007. NM_000422.1 BU155457.1 EST 1 1181 57561.002.1-T_at −0.57383 0.57383005 6.720582 7E−10 57561.002 NM_020801.1 DB094913.1 EST 1 1182 57451.002.3-B_at −0.57383 0.57382775 6.720542 7E−10 57451.002 XM_931456.1 AX133821.1 GENBANK_PATENT 1 1183 5213.024.1-B_at −0.57376 0.57376229 6.719399 7E−10 5213.024. NM_000289.3 CQ723196.1 GENBANK_PATENT 1 1184 2.005.1-T_at −0.57371 0.57370601 6.718416 8E−10 2.005.1 NM_000014.4 BI493707.1 EST 1 1185 11065.004.1-C_at 0.573605 0.57360463 6.716647 8E−10 11065.004 NM_181802.1 NM_181803.1 REFSEQ 3 1186 1410.006.1-C_at −0.57357 0.57356845 6.716015 8E−10 1410.006. NM_001885.1 BF670917.1 EST 1 1187 6289.006.1-T_at −0.57356 0.5735557 6.715793 8E−10 6289.006. NM_030754.2 BG618255.1 EST 3 1188 55366.001.1-T_at −0.57354 0.57353923 6.715506 8E−10 55366.001 NM_018490.1 CQ722924.1 GENBANK_PATENT 1 1189 23284.007.1-F_at −0.57343 0.57342883 6.71358 8E−10 23284.007 NM_015236.3 CX868514.1 EST 1 1190 79971.009.1-T_at −0.57327 0.573273 6.710862 8E−10 79971.009 NM_001002292. DA264864.1 EST 1 1191 6288.004.1-E_at −0.57316 0.57316396 6.708961 8E−10 6288.004. NM_199161.1 BG567754.1 EST 3 1192 11065.004.1-T_at 0.573162 0.57316172 6.708922 8E−10 11065.004 NM_181802.1 NM_181803.1 REFSEQ 3 1193 51203.009.1-T_at 0.572864 0.57286422 6.703738 8E−10 51203.009 NM_016359.2 AV714397.1 EST 1 1194 1410.010.1-E_at −0.57282 0.57282236 6.703009 8E−10 1410.010. NM_001885.1 AJ710474.1 EST 2 1195 57447.030.1-D_at −0.57277 0.57277435 6.702173 8E−10 57447.030 NM_201535.1 BM783465.1 EST 5 1196 1308.002.1-T_at −0.57253 0.57252742 6.697874 8E−10 1308.002. NM_130778.1 BX117940.1 EST 2 1197 4288.007.1-C_at 0.572423 0.57242333 6.696062 8E−10 4288.007. NM_002417.2 BE840921.1 EST 1 1198 244.011.1-T_at −0.5724 0.57240479 6.69574 8E−10 244.011.1 NM_001630.1 BX399166.2 EST 1 1199 94274.003.1-B_at −0.57238 0.57238283 6.695358 8E−10 94274.003 NM_033256.1 AB056509.1 mRNA 1 1200 3178.003.1-E_at −0.57235 0.5723545 6.694865 8E−10 3178.003. NM_031157.2 DA761057.1 EST 1 1201 7153.002.4-T_at 0.572294 0.57229362 6.693806 8E−10 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 1202 9055.012.1-D_at 0.57223 0.57222967 6.692694 8E−10 9055.012. NM_003981.2 BE298728.1 EST 1 1203 9232.001.1-E_at 0.572158 0.57215824 6.691452 8E−10 9232.001. NM_004219.2 CN285866.1 EST 1 1204 79068.011.2-B_at −0.57201 0.57200741 6.68883 9E−10 79068.011 XM_051200.8 CQ733443.1 GENBANK_PATENT 1 1205 120.005.2-F_at −0.57195 0.57194991 6.687831 9E−10 120.005.2 NM_019903.3 AK223270.1 mRNA 78 1206 7534.001.1-C_at 0.571947 0.57194717 6.687783 9E−10 7534.001. NM_003406.2 CB051503.1 EST 1 1207 120.005.2-T_at −0.57189 0.57188711 6.686739 9E−10 120.005.2 NM_019903.3 AK223270.1 mRNA 78 1208 7373.003.3-C_at −0.57177 0.57177348 6.684765 9E−10 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 1209 57447.004.2-D_at −0.57171 0.57171371 6.683727 9E−10 57447.004 NM_201535.1 CD515320.1 EST 2 1210 2568.005.1-F_at −0.57162 0.57161693 6.682047 9E−10 2568.005. NM_014211.1 AK055205.1 mRNA 11 1211 1308.001.1-E_at −0.57152 0.5715167 6.680307 9E−10 1308.001. NM_130778.1 BM773425.1 EST 1 1212 6876.020.1-F_at −0.57133 0.5713288 6.677046 9E−10 6876.020. NM_001001522. BM921237.1 EST 1 1213 79971.014.1-D_at −0.57124 0.57124451 6.675583 9E−10 79971.014 NM_001002292. DA776805.1 EST 1 1214 5621.008.1-D_at −0.57121 0.57120843 6.674957 9E−10 5621.008. NM_000311.2 DA648110.1 EST 1 1215 55732.003.2-T_at 0.571055 0.57105463 6.67229 9E−10 55732.003 NM_018186.2 DA733233.1 EST 2 1216 221120.006.1-D −0.57094 0.57093826 6.670273 9E−10 221120.00 NM_139178.1 BE892721.1 EST 1 1217 23266.008.1-T_at −0.57077 0.57076776 6.667318 9E−10 23266.008 NM_012302.2 CQ799210.1 GENBANK_PATENT 1 1218 2335.045.1-F_at 0.570754 0.57075398 6.66708 1E−09 2335.045. NM_212482.1 DA989523.1 EST 1 1219 7170.007.1-F_at 0.570733 0.57073264 6.66671 1E−09 7170.007. NM_153649.2 DA684242.1 EST 1 1220 10461.002.1-B_at −0.57071 0.57071065 6.666329 1E−09 10461.002 NM_006343.2 CQ725500.1 GENBANK_PATENT 1 1221 59.031.2-F_at −0.57071 0.57070847 6.666291 1E−09 59.031.2 NM_001613.1 BG197213.1 EST 19 1222 9055.010.1-T_at 0.570674 0.5706743 6.665699 1E−09 9055.010. NM_003981.2 BU164001.1 EST 1 1223 58499.005.2-F_at −0.5706 0.5706034 6.664471 1E−09 58499.005 NM_021224.3 BI461756.1 EST 1 1224 54443.006.2-F_at 0.570459 0.57045888 6.661969 1E−09 54443.006 NM_018685.2 CQ716589.1 GENBANK_PATENT 1 1225 59.016.1-B_at −0.57036 0.57035643 6.660196 1E−09 59.016.1 — — — — 1226 4288.004.1-C_at 0.570301 0.5703013 6.659241 1E−09 4288.004. NM_002417.2 BP232141.1 EST 1 1227 7170.014.1-C_at 0.570269 0.57026859 6.658675 1E−09 7170.014. NM_153649.2 DA690776.1 EST 1 1228 7170.007.1-D_at 0.570241 0.57024107 6.658199 1E−09 7170.007. NM_153649.2 DA684242.1 EST 1 1229 244.004.2-B_at −0.56972 0.56971798 6.649154 1E−09 244.004.2 NM_001630.1 CB115047.1 EST 1 1230 59.015.2-D_at −0.56961 0.56961045 6.647297 1E−09 59.015.2 NM_001613.1 BP372009.1 EST 1 1231 2327.002.1-B_at −0.56956 0.56955941 6.646415 1E−09 2327.002. NM_001460.2 CD684429.1 EST 1 1232 79068.011.2-C_at −0.56954 0.5695389 6.646061 1E−09 79068.011 XM_051200.8 CQ733443.1 GENBANK_PATENT 1 1233 23266.006.1-T_at −0.56936 0.56936191 6.643005 1E−09 23266.006 NM_012302.2 DR005890.1 EST 1 1234 4288.007.1-B_at 0.56932 0.56931985 6.642278 1E−09 4288.007. NM_002417.2 BE840921.1 EST 1 1235 301.008.1-T_at −0.5693 0.56929536 6.641856 1E−09 301.008.1 NM_000700.1 CD688703.1 EST 1 1236 5156.003.1-T_at −0.56918 0.56918229 6.639904 1E−09 5156.003. NM_006206.3 BP321319.1 EST 1 1237 4781.001.1-F_at −0.56917 0.56917015 6.639695 1E−09 4781.001. NM_005596.1 BF541662.1 EST 1 1238 4281.016.1-E_at −0.56916 0.56915511 6.639435 1E−09 4281.016. NM_033290.1 AY540010.1 mRNA 1 1239 72.004.1-T_at −0.5691 0.56910279 6.638533 1E−09 72.004.1 NM_001615.3 BF680547.1 EST 1 1240 57447.029.1-B_at −0.56896 0.56895732 6.636023 1E−09 57447.029 NM_201535.1 BX354120.2 EST 6 1241 79971.006.2-T_at −0.56871 0.56870809 6.631726 1E−09 79971.006 NM_001002292. DA048370.1 EST 1 1242 2327.003.2-F_at −0.56867 0.56866928 6.631058 1E−09 2327.003. NM_001460.2 AI223310.1 EST 1 1243 166824.001.2-F −0.56859 0.56858745 6.629647 1E−09 166824.00 NM_201431.1 CQ492114.1 GENBANK_PATENT 4 1244 29997.010.1-F_at −0.56857 0.56856635 6.629284 1E−09 29997.010 NM_015710.3 BG120545.1 EST 1 1245 57447.024.1-C_at −0.56853 0.56852805 6.628624 1E−09 57447.024 NM_201535.1 DA566498.1 EST 1 1246 4781.007.1-F_at −0.56839 0.56838621 6.626181 1E−09 4781.007. NM_005596.1 BP350370.1 EST 1 1247 4306.001.1-C_at −0.5682 0.56819649 6.622914 1E−09 4306.001. NM_000901.1 AJ315514.1 mRNA 5 1248 137682.002.2-T 0.568182 0.56818211 6.622667 1E−09 137682.00 NM_152416.1 BX375940.2 EST 1 1249 24137.002.1-F_at 0.568153 0.56815265 6.62216 1E−09 24137.002 NM_012310.2 BC050548.1 mRNA 1 1250 79971.006.1-T_at −0.56815 0.5681458 6.622042 1E−09 79971.006 NM_001002292. DA048370.1 EST 1 1251 7168.004.1-F_at −0.56797 0.56796804 6.618983 1E−09 7168.004. NM_001018020. BX438993.2 EST 3 1252 79068.011.1-T_at −0.56789 0.56788757 6.617599 1E−09 79068.011 XM_051200.8 CQ733443.1 GENBANK_PATENT 1 1253 4781.009.1-T_at −0.56772 0.56772333 6.614775 1E−09 4781.009. NM_005596.1 CQ732556.1 GENBANK_PATENT 1 1254 5608.003.1-T_at −0.56753 0.56752894 6.611433 1E−09 5608.003. NM_002758.2 BP220368.1 EST 1 1255 9055.014.1-D_at 0.56752 0.56752001 6.61128 1E−09 9055.014. NM_003981.2 BE300335.1 EST 1 1256 5156.009.1-F_at −0.56751 0.56750707 6.611058 1E−09 5156.009. NM_006206.3 L25829.1 mRNA 3 1257 9055.018.2-F_at 0.567502 0.56750204 6.610971 1E−09 9055.018. NM_003981.2 DA033856.1 EST 1 1258 92241.002.1-D_at −0.5675 0.56749779 6.610898 1E−09 92241.002 NM_052862.2 CQ730679.1 GENBANK_PATENT 5 1259 5010.007.1-B_at −0.56735 0.56734864 6.608336 1E−09 5010.007. NM_005602.4 BQ067107.1 EST 1 1260 2335.028.1-T_at 0.567345 0.56734544 6.608281 1E−09 2335.028. NM_212482.1 AJ320525.1 mRNA 1 1261 7113.006.1-E_at −0.56728 0.56728076 6.60717 1E−09 7113.006. NM_005656.2 DA874671.1 EST 1 1262 1756.024.1-B_at −0.56726 0.5672562 6.606748 1E−09 1756.024. NM_000109.2 CD299688.1 EST 1 1263 79971.008.2-T_at −0.56716 0.56716259 6.605141 1E−09 79971.008 NM_001002292. DA711278.1 EST 1 1264 7169.001.1-F_at −0.56705 0.56704888 6.603189 1E−09 7169.001. NM_213674.1 BM809268.1 EST 4 1265 2.022.1-D_at −0.56703 0.56702777 6.602826 1E−09 2.022.1 NM_000014.4 BP343424.1 EST 1 1266 6876.020.1-D_at −0.56697 0.56697169 6.601864 1E−09 6876.020. NM_001001522. BM921237.1 EST 1 1267 301.011.1-C_at −0.56692 0.56691975 6.600973 1E−09 301.011.1 NM_000700.1 BG435248.1 EST 1 1268 25862.005.1-E_at −0.56682 0.5668213 6.599284 1E−09 25862.005 NM_018561.3 DR003626.1 EST 1 1269 7170.047.2-D_at 0.566775 0.56677489 6.598488 1E−09 7170.047. NM_153649.2 BF693459.1 EST 1 1270 4281.010.1-T_at −0.56677 0.56677057 6.598413 1E−09 4281.010. NM_033290.1 AY540016.1 mRNA 1 1271 57447.020.1-T_at −0.56666 0.56665556 6.596441 1E−09 57447.020 NM_201535.1 BX461883.2 EST 5 1272 7170.035.2-D_at 0.566638 0.56663777 6.596136 1E−09 7170.035. NM_153649.2 BF575164.1 EST 1 1273 10124.005.1-T_at −0.56646 0.56645955 6.593081 1E−09 10124.005 NM_001037164. BU661565.1 EST 1 1274 9055.018.1-C_at 0.566425 0.56642488 6.592487 1E−09 9055.018. NM_003981.2 DA033856.1 EST 1 1275 59.038.1-T_at −0.56631 0.56630982 6.590515 1E−09 59.038.1 NM_001613.1 EH_001613.2 PREDICTED 1 1276 4288.009.1-B_at 0.566296 0.56629606 6.59028 1E−09 4288.009. NM_002417.2 BG106198.1 EST 1 1277 57561.004.1-E_at −0.5662 0.56620405 6.588704 1E−09 57561.004 NM_020801.1 DB046772.1 EST 1 1278 2568.003.2-B_at −0.56616 0.56615719 6.587901 1E−09 2568.003. NM_014211.1 CD696885.1 EST 1 1279 55713.004.1-T_at −0.56607 0.56607498 6.586493 1E−09 55713.004 NM_018102.3 AL833936.1 mRNA 1 1280 2335.026.3-F_at 0.565913 0.56591326 6.583725 1E−09 2335.026. NM_212482.1 BX641150.1 mRNA 43 1281 7168.010.1-C_at −0.56585 0.56585375 6.582706 1E−09 7168.010. NM_001018020. CD556048.1 EST 1 1282 1959.002.1-T_at −0.56583 0.56583226 6.582339 1E−09 1959.002. NM_000399.2 DB264199.1 EST 5 1283 259266.002.2-F 0.565786 0.56578622 6.581551 1E−09 259266.00 NM_018136.2 CQ729660.1 GENBANK_PATENT 1 1284 57447.010.3-C_at −0.56578 0.56578285 6.581493 1E−09 57447.010 NM_201535.1 BP349691.1 EST 1 1285 59.026.2-D_at −0.56573 0.56573398 6.580657 1E−09 59.026.2 — — — — 1286 5156.002.1-B_at −0.56572 0.56571946 6.580409 1E−09 5156.002. NM_006206.3 DB259428.1 EST 1 1287 10124.003.1-F_at −0.56572 0.56571682 6.580364 1E−09 10124.003 NM_001037164. BU664973.1 EST 1 1288 4240.007.1-T_at −0.56557 0.56556799 6.577818 1E−09 4240.007. NM_005928.1 CN485231.1 EST 1 1289 4931.007.1-F_at 0.565418 0.56541793 6.575252 1E−09 4931.007. NM_002533.2 CQ731324.1 GENBANK_PATENT 1 1290 57447.039.1-C_at −0.5653 0.56530385 6.573303 1E−09 57447.039 NM_201535.1 DA356658.1 EST 1 1291 57561.001.1-T_at −0.56529 0.56529076 6.573079 1E−09 57561.001 NM_020801.1 BQ428339.1 EST 1 1292 57447.002.1-D_at −0.56527 0.56526525 6.572643 1E−09 57447.002 NM_201535.1 BF526188.1 EST 1 1293 4094.001.1-B_at −0.56526 0.56525669 6.572497 1E−09 4094.001. NM_001031804. NM_005360.3 REFSEQ 17 1294 59.041.2-T_at −0.56524 0.56524383 6.572277 1E−09 59.041.2 NM_001613.1 AL540709.3 EST 1 1295 137682.004.2-T 0.565172 0.56517245 6.571058 1E−09 137682.00 NM_152416.1 BI670491.1 EST 1 1296 4931.011.2-T_at 0.565117 0.56511747 6.570118 1E−09 4931.011. NM_002533.2 BU170621.1 EST 1 1297 79971.010.2-T_at −0.56505 0.56505357 6.569027 1E−09 79971.010 NM_001002292. CB268343.1 EST 1 1298 29127.009.1-T_at 0.564971 0.56497093 6.567616 1E−09 29127.009 NM_013277.2 BX421176.2 EST 1 1299 2770.004.1-T_at −0.56473 0.56473004 6.563504 2E−09 2770.004. NM_002069.4 DA801873.1 EST 1 1300 59.015.2-F_at −0.56468 0.56468244 6.562692 2E−09 59.015.2 NM_001613.1 BP372009.1 EST 1 1301 2335.032.1-B_at 0.564674 0.56467386 6.562545 2E−09 2335.032. NM_212482.1 DA647475.1 EST 1 1302 1410.006.1-B_at −0.56446 0.56446046 6.558905 2E−09 1410.006. NM_001885.1 BF670917.1 EST 1 1303 79971.004.1-B_at −0.56442 0.56442019 6.558218 2E−09 79971.004 NM_001002292. BX648748.1 mRNA 2 1304 94274.003.1-T_at −0.56432 0.56432491 6.556594 2E−09 94274.003 NM_033256.1 AB056509.1 mRNA 1 1305 2335.005.1-T_at 0.564117 0.5641167 6.553045 2E−09 2335.005. NM_212482.1 BX417388.2 EST 1 1306 966.004.2-B_at −0.56412 0.56411646 6.553041 2E−09 966.004.2 NM_203330.1 AU117114.1 EST 3 1307 79780.006.1-B_at −0.56406 0.5640582 6.552049 2E−09 79780.006 NM_024725.2 BG570666.1 EST 1 1308 57561.003.1-T_at −0.56392 0.56392094 6.549711 2E−09 57561.003 NM_020801.1 DA797962.1 EST 1 1309 9073.002.1-B_at −0.56389 0.56389001 6.549184 2E−09 9073.002. NM_199328.1 BP277133.1 EST 1 1310 55656.014.2-F_at 0.56379 0.56378984 6.547479 2E−09 55656.014 NM_017864.2 BF770934.1 EST 1 1311 2335.035.1-B_at 0.563724 0.56372399 6.546357 2E−09 2335.035. NM_212482.1 CX755647.1 EST 1 1312 3161.005.1-T_at 0.563648 0.56364847 6.545072 2E−09 3161.005. NM_012484.1 AX675838.1 GENBANK_PATENT 1 1313 57451.006.1-B_at −0.56362 0.56362219 6.544625 2E−09 57451.006 XM_931456.1 AL598057.1 EST 1 1314 2568.004.1-T_at −0.56349 0.56348518 6.542294 2E−09 2568.004. NM_014211.1 BP342098.1 EST 1 1315 440073.003.1-E −0.56329 0.56329195 6.539007 2E−09 440073.00 NM_015232.1 BX110676.1 EST 1 1316 2335.006.1-T_at 0.563204 0.56320431 6.537517 2E−09 2335.006. NM_212482.1 CX785805.1 EST 1 1317 10051.011.2-T_at 0.563182 0.56318212 6.53714 2E−09 10051.011 NM_001002799. BG776861.1 EST 4 1318 55784.003.1-T_at −0.56304 0.56303549 6.534648 2E−09 55784.003 NM_018349.2 BC025708.1 mRNA 2 1319 3860.010.1-T_at −0.56302 0.56302355 6.534445 2E−09 3860.010. NM_153490.1 DA441591.1 EST 1 1320 5284.001.1-D_at −0.56297 0.56297106 6.533553 2E−09 5284.001. NM_002644.2 AX012182.1 GENBANK_PATENT 1 1321 301.003.1-T_at −0.56291 0.56291408 6.532585 2E−09 301.003.1 NM_000700.1 CB124198.1 EST 1 1322 4240.007.1-F_at −0.5629 0.56290348 6.532405 2E−09 4240.007. NM_005928.1 CN485231.1 EST 1 1323 4240.007.1-B_at −0.56283 0.56283211 6.531193 2E−09 4240.007. NM_005928.1 CN485231.1 EST 1 1324 4781.015.2-D_at −0.56272 0.56272205 6.529324 2E−09 4781.015. NM_005596.1 DN995118.1 EST 1 1325 10124.001.1-T_at −0.56261 0.56260672 6.527366 2E−09 10124.001 NM_001037164. BX354322.2 EST 87 1326 57561.004.1-T_at −0.56258 0.56258399 6.52698 2E−09 57561.004 NM_020801.1 DB046772.1 EST 1 1327 29127.022.2-T_at 0.562515 0.56251532 6.525814 2E−09 29127.022 NM_013277.2 DB065206.1 EST 1 1328 10461.002.2-T_at −0.56243 0.56242806 6.524333 2E−09 10461.002 NM_006343.2 CQ725500.1 GENBANK_PATENT 1 1329 7168.039.1-B_at −0.56237 0.56236838 6.523321 2E−09 7168.039. NM_001018020. AA096317.1 EST 1 1330 90293.004.2-T_at −0.56231 0.56231454 6.522407 2E−09 90293.004 NM_033495.2 AL591986.1 mRNA 38 1331 1410.006.1-D_at −0.56207 0.56206646 6.518201 2E−09 1410.006. NM_001885.1 BF670917.1 EST 1 1332 7113.010.1-E_at −0.56205 0.56205065 6.517933 2E−09 7113.010. NM_005656.2 DA460061.1 EST 1 1333 8404.025.1-T_at −0.562 0.56200329 6.51713 2E−09 8404.025. NM_004684.2 DB086831.1 EST 1 1334 79971.008.1-T_at −0.56198 0.56198359 6.516796 2E−09 79971.008 NM_001002292. DA711278.1 EST 1 1335 4240.005.1-T_at −0.56194 0.5619438 6.516122 2E−09 4240.005. NM_005928.1 BX341151.2 EST 1 1336 10051.007.1-T_at 0.561888 0.56188758 6.515169 2E−09 10051.007 NM_001002799. CS161896.1 GENBANK_PATENT 13 1337 2.002.1-F_at −0.56186 0.56185527 6.514621 2E−09 2.002.1 NM_000014.4 CQ672194.1 GENBANK_PATENT 1 1338 29997.021.1-E_at −0.56185 0.56185259 6.514576 2E−09 29997.021 NM_015710.3 CN353870.1 EST 1 1339 1410.011.1-T_at −0.56169 0.56168682 6.511768 2E−09 1410.011. NM_001885.1 BI561839.1 EST 1 1340 4601.009.2-F_at −0.56154 0.5615434 6.509339 2E−09 4601.009. NM_130439.3 BE789186.1 EST 1 1341 1959.001.1-T_at −0.56154 0.56153623 6.509218 2E−09 1959.001. NM_000399.2 DB086600.1 EST 1 1342 2335.026.3-T_at 0.561472 0.56147179 6.508127 2E−09 2335.026. NM_212482.1 BX641150.1 mRNA 43 1343 55107.001.1-F_at −0.56145 0.56144879 6.507738 2E−09 55107.001 NM_018043.4 AY728143.1 mRNA 30 1344 1062.001.1-D_at 0.561342 0.56134161 6.505924 2E−09 1062.001. NM_001813.2 CQ715352.1 GENBANK_PATENT 1 1345 6876.002.1-B_at −0.56132 0.56132281 6.505606 2E−09 6876.002. NM_001001522. DB262921.1 EST 1 1346 358.018.1-D_at −0.56116 0.56116002 6.502851 2E−09 358.018.1 NM_198098.1 BI765065.1 EST 1 1347 4781.004.1-F_at −0.5611 0.56110421 6.501907 2E−09 4781.004. NM_005596.1 BG742798.1 EST 4 1348 8404.028.3-F_at −0.56107 0.56107051 6.501338 2E−09 8404.028. NM_004684.2 CQ727530.1 GENBANK_PATENT 1 1349 11130.004.1-T_at 0.561027 0.56102703 6.500602 2E−09 11130.004 NM_001005414. BQ065119.1 EST 1 1350 2568.002.2-B_at −0.56101 0.56100825 6.500285 2E−09 2568.002. NM_014211.1 DB235581.1 EST 1 1351 29089.004.1-T_at 0.560878 0.56087834 6.498089 2E−09 29089.004 NM_014176.1 AV727151.1 EST 1 1352 57685.005.1-B_at −0.5608 0.56079992 6.496763 2E−09 57685.005 NM_020925.1 CQ721664.1 GENBANK_PATENT 1 1353 7170.016.3-T_at 0.560753 0.56075324 6.495974 2E−09 7170.016. NM_153649.2 BF575596.1 EST 1 1354 10440.003.1-T_at 0.560736 0.56073635 6.495689 2E−09 10440.003 NM_006335.1 BG492850.1 EST 1 1355 2335.017.1-F_at 0.560696 0.56069643 6.495015 2E−09 2335.017. NM_212482.1 CQ896577.1 GENBANK_PATENT 4 1356 2.002.1-D_at −0.56056 0.56056211 6.492745 2E−09 2.002.1 NM_000014.4 CQ672194.1 GENBANK_PATENT 1 1357 9055.018.1-D_at 0.56056 0.56056001 6.49271 2E−09 9055.018. NM_003981.2 DA033856.1 EST 1 1358 64151.003.1-T_at 0.56055 0.56055011 6.492543 2E−09 64151.003 NM_022346.3 BG202075.1 EST 1 1359 59342.002.1-B_at −0.5605 0.56049557 6.491622 2E−09 59342.002 NM_021626.1 BP338281.1 EST 1 1360 7169.007.1-F_at −0.56034 0.56033824 6.488965 2E−09 7169.007. NM_213674.1 BQ923578.1 EST 67 1361 7170.026.1-C_at 0.560224 0.5602241 6.487039 2E−09 7170.026. NM_153649.2 BQ933569.1 EST 1 1362 667.010.1-B_at −0.56012 0.56011837 6.485255 2E−09 667.010.1 NM_183380.1 DA361412.1 EST 1 1363 4781.010.1-F_at −0.56006 0.56006097 6.484286 2E−09 4781.010. NM_005596.1 BX648845.1 mRNA 3 1364 10051.001.1-T_at 0.560051 0.56005099 6.484118 2E−09 10051.001 NM_001002799. BC106033.1 mRNA 52 1365 7113.004.1-C_at −0.56001 0.56001252 6.483469 2E−09 7113.004. NM_005656.2 CQ976405.1 GENBANK_PATENT 2 1366 140885.010.2-F −0.55988 0.55988455 6.481311 2E−09 140885.01 NM_080792.2 CQ728313.1 GENBANK_PATENT 1 1367 29997.019.1-F_at −0.55983 0.55982573 6.480319 2E−09 29997.019 NM_015710.3 BF771953.1 EST 1 1368 2335.013.1-T_at 0.559752 0.55975189 6.479074 2E−09 2335.013. NM_212482.1 AL551632.3 EST 2 1369 7170.017.1-D_at 0.55967 0.55967009 6.477696 2E−09 7170.017. NM_153649.2 BF574676.1 EST 1 1370 219972.004.1-F −0.55958 0.55957847 6.476152 2E−09 219972.00 XM_166227.6 DA946058.1 EST 1 1371 22974.010.1-E_at 0.559421 0.55942061 6.473493 2E−09 22974.010 NM_012112.4 DB096591.1 EST 1 1372 2982.011.1-T_at −0.55932 0.55932229 6.471837 2E−09 2982.011. NM_000856.2 BX649180.1 mRNA 10 1373 152015.005.1-F −0.55929 0.55929021 6.471297 2E−09 152015.00 NM_001012337. CQ732372.1 GENBANK_PATENT 1 1374 3914.001.1-C_at −0.5592 0.55919902 6.469761 2E−09 3914.001. NM_000228.2 CQ921791.1 GENBANK_PATENT 2 1375 7168.012.2-B_at −0.55912 0.55911961 6.468425 2E−09 7168.012. NM_001018020. AK129882.1 mRNA 2 1376 1938.024.1-C_at −0.55904 0.55903817 6.467054 2E−09 1938.024. NM_001961.3 BE747136.1 EST 1 1377 10051.004.1-T_at 0.559001 0.55900072 6.466424 2E−09 10051.004 NM_001002799. DB144219.1 EST 1 1378 2335.006.1-B_at 0.55897 0.55897034 6.465913 2E−09 2335.006. NM_212482.1 CX785805.1 EST 1 1379 57447.028.1-E_at −0.55892 0.55891938 6.465056 2E−09 57447.028 NM_201535.1 DA205446.1 EST 1 1380 2893.001.1-T_at −0.5589 0.55890095 6.464746 2E−09 2893.001. NM_000829.1 DA258118.1 EST 1 1381 4288.005.1-F_at 0.558883 0.55888308 6.464445 2E−09 4288.005. NM_002417.2 BM455229.1 EST 1 1382 2938.007.1-T_at −0.55888 0.55887858 6.464369 2E−09 2938.007. NM_145740.2 AX477713.1 GENBANK_PATENT 1 1383 29127.020.1-T_at 0.558848 0.55884819 6.463858 2E−09 29127.020 NM_013277.2 DB089267.1 EST 1 1384 154810.002.1-T −0.55861 0.55861375 6.459916 2E−09 154810.00 NM_130847.1 AX886249.1 GENBANK_PATENT 1 1385 9232.001.1-T_at 0.558605 0.55860527 6.459774 2E−09 9232.001. NM_004219.2 CN285866.1 EST 1 1386 55214.004.1-T_at −0.55803 0.55802814 6.450079 3E−09 55214.004 NM_018192.2 DA953365.1 EST 1 1387 79971.002.1-B_at −0.55798 0.5579779 6.449236 3E−09 79971.002 NM_001002292. CQ720425.1 GENBANK_PATENT 1 1388 3977.002.1-T_at −0.55793 0.55793279 6.448479 3E−09 3977.002. NM_002310.3 DR005799.1 EST 1 1389 7170.028.1-F_at 0.557857 0.5578569 6.447206 3E−09 7170.028. NM_153649.2 BQ220396.1 EST 2 1390 1410.009.1-E_at −0.55785 0.55784993 6.447089 3E−09 1410.009. NM_001885.1 BQ437433.1 EST 2 1391 4781.004.1-T_at −0.55762 0.55762387 6.443297 3E−09 4781.004. NM_005596.1 BG742798.1 EST 4 1392 9413.002.2-T_at −0.55755 0.5575481 6.442026 3E−09 9413.002. NM_004816.2 AW779892.1 EST 1 1393 25925.005.1-T_at −0.55744 0.55744483 6.440295 3E−09 25925.005 NM_015461.1 DB285938.1 EST 1 1394 55366.002.1-T_at −0.55743 0.55743398 6.440113 3E−09 55366.002 NM_018490.1 BC033039.2 mRNA 3 1395 6288.001.1-E_at −0.55742 0.55742086 6.439893 3E−09 6288.001. NM_199161.1 AX899121.1 GENBANK_PATENT 2 1396 2335.025.2-C_at 0.557411 0.55741092 6.439727 3E−09 2335.025. NM_212482.1 CQ715726.1 GENBANK_PATENT 3 1397 2335.004.1-F_at 0.557345 0.55734468 6.438616 3E−09 2335.004. NM_212482.1 AU139388.1 EST 1 1398 7170.038.1-F_at 0.557344 0.55734423 6.438609 3E−09 7170.038. NM_153649.2 BG425254.1 EST 2 1399 7373.003.3-B_at −0.55728 0.55728249 6.437574 3E−09 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 1400 5744.003.2-B_at −0.55713 0.55713472 6.435099 3E−09 5744.003. NM_198965.1 BG680355.1 EST 1 1401 1164.001.1-F_at 0.556978 0.5569777 6.432469 3E−09 1164.001. NM_001827.1 AX971617.1 GENBANK_PATENT 1 1402 23266.005.1-T_at −0.55685 0.55685184 6.430362 3E−09 23266.005 NM_012302.2 DA764511.1 EST 1 1403 4601.015.2-F_at −0.55673 0.55673111 6.428342 3E−09 4601.015. NM_130439.3 DA279837.1 EST 1 1404 23092.009.1-D_at −0.55669 0.55668653 6.427596 3E−09 23092.009 NM_015071.2 BM045740.1 EST 1 1405 83699.004.1-T_at −0.55668 0.55667613 6.427422 3E−09 83699.004 NM_031469.1 AX980231.1 GENBANK_PATENT 1 1406 2982.013.1-T_at −0.55666 0.55665713 6.427104 3E−09 2982.013. NM_000856.2 CF594362.1 EST 1 1407 26289.013.1-F_at −0.55662 0.55662356 6.426543 3E−09 26289.013 NM_174858.1 CK024190.1 EST 1 1408 7113.003.1-F_at −0.55657 0.5565676 6.425607 3E−09 7113.003. NM_005656.2 CQ976404.1 GENBANK_PATENT 2 1409 390.003.1-T_at −0.55648 0.55648155 6.424167 3E−09 390.003.1 NM_005168.3 DA532407.1 EST 1 1410 6304.002.2-T_at −0.55641 0.55641323 6.423025 3E−09 6304.002. NM_002971.2 BC001744.1 mRNA 33 1411 6304.009.2-T_at −0.55633 0.55633335 6.42169 3E−09 6304.009. NM_002971.2 DA497369.1 EST 1 1412 3872.017.1-T_at −0.55631 0.55631309 6.421351 3E−09 3872.017. NM_000422.1 BX378477.2 EST 1 1413 2335.013.1-D_at 0.556298 0.55629818 6.421102 3E−09 2335.013. NM_212482.1 AL551632.3 EST 2 1414 6790.001.1-T_at 0.556293 0.55629311 6.421017 3E−09 6790.001. NM_198436.1 D84212.1 mRNA 8 1415 51201.007.1-B_at −0.55615 0.55614867 6.418603 3E−09 51201.007 NM_016353.2 BF541714.1 EST 1 1416 54443.009.1-T_at 0.55614 0.5561397 6.418453 3E−09 54443.009 NM_018685.2 DA242046.1 EST 1 1417 54443.012.1-F_at 0.556003 0.55600288 6.416167 3E−09 54443.012 NM_018685.2 BG167656.1 EST 1 1418 5608.003.1-D_at −0.55592 0.55592463 6.41486 3E−09 5608.003. NM_002758.2 BP220368.1 EST 1 1419 2.005.1-B_at −0.55591 0.55590928 6.414604 3E−09 2.005.1 NM_000014.4 BI493707.1 EST 1 1420 23015.010.2-F_at −0.55591 0.55590628 6.414554 3E−09 23015.010 NM_181076.2 XM_497449.1 REFSEQ 1 1421 25925.010.1-T_at −0.55586 0.55585644 6.413722 3E−09 25925.010 NM_015461.1 DA215395.1 EST 1 1422 79745.002.2-T_at −0.55584 0.55584433 6.413519 3E−09 79745.002 NM_024692.3 DB034631.1 EST 2 1423 23650.007.1-E_at −0.55581 0.55580568 6.412874 3E−09 23650.007 NM_058193.1 BX395679.2 EST 1 1424 953.013.1-B_at −0.55579 0.55578981 6.412609 3E−09 953.013.1 NM_001776.3 CQ721824.1 GENBANK_PATENT 1 1425 7153.002.5-C_at 0.555743 0.55574323 6.411832 3E−09 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 1426 4240.001.1-T_at −0.55574 0.55573744 6.411735 3E−09 4240.001. NM_005928.1 BF525404.1 EST 1 1427 58499.005.1-T_at −0.55571 0.55571242 6.411317 3E−09 58499.005 NM_021224.3 BI461756.1 EST 1 1428 7168.026.1-C_at −0.55559 0.55558982 6.409271 3E−09 7168.026. NM_001018020. CV810859.1 EST 1 1429 8404.026.1-T_at −0.55558 0.55558292 6.409156 3E−09 8404.026. NM_004684.2 BX647713.1 mRNA 141 1430 94274.002.1-D_at −0.55557 0.55557226 6.408978 3E−09 94274.002 NM_033256.1 CQ730829.1 GENBANK_PATENT 1 1431 301.008.1-C_at −0.55554 0.55553521 6.40836 3E−09 301.008.1 NM_000700.1 CD688703.1 EST 1 1432 3426.001.1-C_at −0.55549 0.55548513 6.407525 3E−09 3426.001. NM_000204.1 BC020718.1 mRNA 165 1433 2938.007.2-B_at −0.55543 0.55543318 6.406658 3E−09 2938.007. NM_145740.2 AX477713.1 GENBANK_PATENT 1 1434 7373.003.5-C_at −0.55538 0.55537917 6.405757 3E−09 7373.003. NM_021110.1 CQ716670.1 GENBANK_PATENT 1 1435 7169.001.2-F_at −0.55536 0.55535866 6.405415 3E−09 7169.001. NM_213674.1 BM809268.1 EST 4 1436 2119.007.1-F_at −0.55522 0.5552225 6.403145 3E−09 2119.007. NM_004454.1 BE408130.1 EST 1 1437 1959.001.2-T_at −0.55498 0.55498357 6.399162 3E−09 1959.001. NM_000399.2 DB086600.1 EST 1 1438 9824.006.1-T_at 0.55476 0.55475962 6.395432 3E−09 9824.006. NM_014783.2 CK903028.1 EST 2 1439 301.013.1-B_at −0.55475 0.55475105 6.395289 3E−09 301.013.1 NM_000700.1 BF130804.1 EST 1 1440 10124.004.1-B_at −0.55458 0.55458304 6.392491 3E−09 10124.004 NM_001037164. BU661374.1 EST 12 1441 140885.010.3-F −0.55438 0.55438483 6.389193 3E−09 140885.01 NM_080792.2 CQ728313.1 GENBANK_PATENT 1 1442 54443.012.1-B_at 0.554381 0.5543815 6.389137 3E−09 54443.012 NM_018685.2 BG167656.1 EST 1 1443 29997.008.1-F_at −0.55437 0.554365 6.388863 3E−09 29997.008 NM_015710.3 BI871613.1 EST 1 1444 23092.002.1-T_at −0.55436 0.55435963 6.388774 3E−09 23092.002 NM_015071.2 CQ732129.1 GENBANK_PATENT 1 1445 1308.009.1-E_at −0.55427 0.55427197 6.387315 3E−09 1308.009. NM_130778.1 DA425187.1 EST 1 1446 1308.004.1-C_at −0.55418 0.55418499 6.385868 3E−09 1308.004. NM_130778.1 BE615666.1 EST 1 1447 59342.003.1-B_at −0.55416 0.55416164 6.38548 3E−09 59342.003 NM_021626.1 DA821057.1 EST 1 1448 2119.006.1-F_at −0.55414 0.55413804 6.385088 3E−09 2119.006. NM_004454.1 DB094869.1 EST 1 1449 6304.011.2-T_at −0.55412 0.55411832 6.38476 3E−09 6304.011. NM_002971.2 BP359118.1 EST 1 1450 4288.006.2-D_at 0.553943 0.5539433 6.38185 3E−09 4288.006. NM_002417.2 BP363635.1 EST 1 1451 358.017.1-D_at −0.55393 0.5539341 6.381697 3E−09 358.017.1 NM_198098.1 AY312580.1 mRNA 1 1452 29994.009.1-D_at −0.55389 0.55388615 6.380901 4E−09 29994.009 NM_013450.1 DA218896.1 EST 1 1453 23650.006.1-T_at −0.55388 0.55387924 6.380786 4E−09 23650.006 NM_058193.1 BE304682.1 EST 1 1454 3945.024.1-T_at −0.5538 0.55379733 6.379425 4E−09 3945.024. NM_002300.3 BF127786.1 EST 1 1455 9073.003.1-T_at −0.55367 0.55367412 6.377378 4E−09 9073.003. NM_199328.1 BP276390.1 EST 1 1456 55165.004.1-B_at 0.553669 0.55366932 6.377298 4E−09 55165.004 NM_018131.3 BX416068.2 EST 1 1457 54928.003.1-C_at −0.55352 0.55352466 6.374896 4E−09 54928.003 NM_017813.2 DB283344.1 EST 1 1458 489.006.1-C_at −0.55341 0.55340971 6.372987 4E−09 489.006.1 NM_174958.1 CV379840.1 EST 1 1459 6122.030.1-T_at −0.55337 0.55337311 6.37238 4E−09 6122.030. NM_000967.3 BF315041.1 EST 1 1460 4781.014.2-T_at −0.55315 0.55315167 6.368705 4E−09 4781.014. NM_005596.1 DN918235.1 EST 1 1461 7168.014.3-B_at −0.55307 0.55307042 6.367357 4E−09 7168.014. NM_001018020. BP257563.1 EST 1 1462 4147.003.1-F_at −0.55281 0.55280885 6.36302 4E−09 4147.003. NM_002380.3 AY358895.1 mRNA 81 1463 57451.001.3-B_at −0.55273 0.55273245 6.361754 4E−09 57451.001 XM_931456.1 CS188752.1 GENBANK_PATENT 1 1464 9055.018.1-T_at 0.552521 0.55252074 6.358246 4E−09 9055.018. NM_003981.2 DA033856.1 EST 1 1465 4931.013.1-T_at 0.552443 0.552443 6.356958 4E−09 4931.013. NM_002533.2 BG771162.1 EST 1 1466 7169.001.1-T_at −0.55242 0.55241607 6.356513 4E−09 7169.001. NM_213674.1 BM809268.1 EST 4 1467 2568.005.1-B_at −0.55241 0.55241426 6.356483 4E−09 2568.005. NM_014211.1 AK055205.1 mRNA 11 1468 4435.001.1-T_at −0.5524 0.55240125 6.356267 4E−09 4435.001. NM_004143.2 AA317379.1 EST 1 1469 2335.006.1-F_at 0.552355 0.55235498 6.355501 4E−09 2335.006. NM_212482.1 CX785805.1 EST 1 1470 55294.007.1-T_at −0.55234 0.55234085 6.355267 4E−09 55294.007 NM_033632.2 BF380630.1 EST 1 1471 4288.006.2-B_at 0.55233 0.55233026 6.355092 4E−09 4288.006. NM_002417.2 BP363635.1 EST 1 1472 29089.003.1-F_at 0.552316 0.55231581 6.354852 4E−09 29089.003 NM_014176.1 AV740591.1 EST 1 1473 2335.032.1-F_at 0.55229 0.55228962 6.354419 4E−09 2335.032. NM_212482.1 DA647475.1 EST 1 1474 57162.003.1-T_at −0.55221 0.55220544 6.353025 4E−09 57162.003 NM_020651.2 BX380539.2 EST 3 1475 4288.005.1-B_at 0.552168 0.5521684 6.352412 4E−09 4288.005. NM_002417.2 BM455229.1 EST 1 1476 3860.004.1-T_at −0.55215 0.5521477 6.35207 4E−09 3860.004. NM_153490.1 DA763721.1 EST 1 1477 2.018.1-F_at −0.55206 0.55205696 6.350568 4E−09 2.018.1 NM_000014.4 DB090657.1 EST 1 1478 23015.010.2-C_at −0.55198 0.55198079 6.349308 4E−09 23015.010 NM_181076.2 XM_497449.1 REFSEQ 1 1479 6122.029.1-F_at −0.55188 0.55188275 6.347686 4E−09 6122.029. NM_000967.3 BG547902.1 EST 1 1480 7113.007.1-E_at −0.55181 0.55181118 6.346503 4E−09 7113.007. NM_005656.2 DR005196.1 EST 1 1481 2982.001.1-T_at −0.55178 0.55177855 6.345963 4E−09 2982.001. NM_000856.2 DA793192.1 EST 1 1482 56999.003.1-C_at −0.55176 0.55175685 6.345604 4E−09 56999.003 NM_182920.1 CQ721254.1 GENBANK_PATENT 1 1483 152015.005.1-B −0.55166 0.55165647 6.343945 4E−09 152015.00 NM_001012337. CQ732372.1 GENBANK_PATENT 1 1484 1410.002.1-T_at −0.55165 0.55165464 6.343914 4E−09 1410.002. NM_001885.1 AX899073.1 GENBANK_PATENT 4 1485 7373.004.1-B_at −0.55161 0.55160828 6.343148 4E−09 7373.004. NM_021110.1 M64109.1 mRNA 1 1486 492304.010.1-T −0.5516 0.55160004 6.343012 4E−09 492304.01 — — — — 1487 80034.003.2-T_at −0.55149 0.55148932 6.341182 4E−09 80034.003 NM_024969.2 CQ733306.1 GENBANK_PATENT 1 1488 4281.009.1-F_at −0.55134 0.55133895 6.338698 4E−09 4281.009. NM_033290.1 AY540014.1 mRNA 1 1489 301.011.1-B_at −0.5513 0.55130021 6.338058 4E−09 301.011.1 NM_000700.1 BG435248.1 EST 1 1490 90293.002.2-T_at −0.55112 0.55112335 6.335138 4E−09 90293.002 NM_033495.2 BP360232.1 EST 1 1491 800.013.1-C_at −0.55112 0.55112102 6.335099 4E−09 800.013.1 NM_033138.2 NM_033157.2 REFSEQ 151 1492 142.011.1-T_at 0.550921 0.55092062 6.331791 4E−09 142.011.1 NM_001618.2 DA757025.1 EST 1 1493 6876.017.1-T_at −0.55079 0.55078992 6.329635 4E−09 6876.017. NM_001001522. BX428130.2 EST 1 1494 825.021.1-D_at −0.55076 0.55076446 6.329215 4E−09 825.021.1 NM_212464.1 AV645796.1 EST 1 1495 714.002.1-F_at −0.5507 0.55069829 6.328124 4E−09 714.002.1 NM_172369.2 AX894785.1 GENBANK_PATENT 1 1496 2335.039.1-C_at 0.550688 0.55068782 6.327951 4E−09 2335.039. NM_212482.1 BP288118.1 EST 1 1497 2.024.2-D_at −0.55068 0.55068374 6.327884 4E−09 2.024.2 NM_000014.4 DB286897.1 EST 1 1498 9037.004.2-T_at −0.55067 0.55066904 6.327641 4E−09 9037.004. NM_003966.1 BF923022.1 EST 1 1499 4781.006.2-D_at −0.55052 0.55051889 6.325165 5E−09 4781.006. NM_005596.1 AK131233.1 mRNA 2 1500 4601.012.1-T_at −0.55051 0.55051321 6.325072 5E−09 4601.012. NM_130439.3 DA746301.1 EST 1 1501 4781.009.2-B_at −0.55048 0.55048372 6.324586 5E−09 4781.009. NM_005596.1 CQ732556.1 GENBANK_PATENT 1 1502 7169.004.1-F_at −0.55041 0.55041381 6.323433 5E−09 7169.004. NM_213674.1 BG027526.1 EST 1 1503 54443.010.1-C_at 0.550402 0.55040232 6.323244 5E−09 54443.010 NM_018685.2 DA196444.1 EST 1 1504 7818.023.1-F_at 0.550382 0.55038162 6.322903 5E−09 7818.023. NM_004632.2 BQ424083.1 EST 1 1505 79971.009.2-T_at −0.55036 0.5503562 6.322484 5E−09 79971.009 NM_001002292. DA264864.1 EST 1 1506 4601.007.1-T_at −0.55036 0.5503552 6.322467 5E−09 4601.007. NM_130439.3 DA009519.1 EST 1 1507 7113.011.2-D_at −0.55032 0.55031657 6.321831 5E−09 7113.011. NM_005656.2 DA868984.1 EST 1 1508 54443.008.1-B_at 0.550158 0.5501582 6.319222 5E−09 54443.008 NM_018685.2 DB172145.1 EST 1 1509 23092.009.2-D_at −0.55009 0.5500931 6.318149 5E−09 23092.009 NM_015071.2 BM045740.1 EST 1 1510 57447.006.1-E_at −0.55005 0.55004557 6.317367 5E−09 57447.006 NM_201535.1 DA283861.1 EST 4 1511 7170.035.2-B_at 0.549889 0.54988872 6.314784 5E−09 7170.035. NM_153649.2 BF575164.1 EST 1 1512 79971.010.1-T_at −0.54986 0.54986373 6.314373 5E−09 79971.010 NM_001002292. CB268343.1 EST 1 1513 4288.004.1-T_at 0.549863 0.54986337 6.314367 5E−09 4288.004. NM_002417.2 BP232141.1 EST 1 1514 59342.006.1-T_at −0.54953 0.54953056 6.308891 5E−09 59342.006 NM_021626.1 BP196952.1 EST 1 1515 4781.017.1-T_at −0.54938 0.54938028 6.30642 5E−09 4781.017. NM_005596.1 DR002043.1 EST 1 1516 4781.013.2-B_at −0.54937 0.54936792 6.306216 5E−09 4781.013. NM_005596.1 DA750893.1 EST 1 1517 23015.010.3-E_at −0.54933 0.54932704 6.305544 5E−09 23015.010 NM_181076.2 XM_497449.1 REFSEQ 1 1518 9055.013.1-B_at 0.548993 0.54899327 6.30006 5E−09 9055.013. NM_003981.2 CN348395.1 EST 1 1519 5621.003.1-T_at −0.54894 0.54894022 6.299188 5E−09 5621.003. NM_000311.2 BP218622.1 EST 1 1520 2893.006.1-T_at −0.5488 0.54880253 6.296927 5E−09 2893.006. NM_000829.1 BF669210.1 EST 1 1521 3161.007.1-F_at 0.548622 0.54862189 6.293962 5E−09 3161.007. NM_012484.1 BG198860.1 EST 1 1522 55107.001.1-T_at −0.54841 0.548412 6.290518 5E−09 55107.001 NM_018043.4 AY728143.1 mRNA 30 1523 2327.002.1-C_at −0.54819 0.54819208 6.286911 5E−09 2327.002. NM_001460.2 CD684429.1 EST 1 1524 3945.014.1-B_at −0.54812 0.54812393 6.285794 5E−09 3945.014. NM_002300.3 BG402389.1 EST 1 1525 151438.003.1-C −0.54801 0.54801484 6.284006 5E−09 151438.00 AK055877.1 DB124570.1 EST 2 1526 7113.013.1-E_at −0.54795 0.54795303 6.282993 5E−09 7113.013. NM_005656.2 DA627080.1 EST 1 1527 441417.001.1-B −0.54784 0.54783722 6.281095 5E−09 441417.00 XM_497039.2 XM_933326.1 REFSEQ 3 1528 2982.012.1-F_at −0.54781 0.54781217 6.280685 6E−09 2982.012. NM_000856.2 BC012627.1 mRNA 2 1529 7168.005.3-E_at −0.54767 0.54766942 6.278347 6E−09 7168.005. NM_001018020. BP373012.1 EST 1 1530 27338.001.1-B_at 0.547668 0.54766773 6.27832 6E−09 27338.001 NM_014501.1 BI198504.1 EST 3 1531 8404.028.1-B_at −0.54766 0.54766289 6.27824 6E−09 8404.028. NM_004684.2 CQ727530.1 GENBANK_PATENT 1 1532 4601.019.1-F_at −0.54764 0.54764478 6.277944 6E−09 4601.019. NM_130439.3 BQ425277.1 EST 1 1533 8404.008.1-B_at −0.54752 0.54751598 6.275835 6E−09 8404.008. NM_004684.2 DA342341.1 EST 1 1534 23266.008.3-F_at −0.54739 0.54739477 6.273851 6E−09 23266.008 NM_012302.2 CQ799210.1 GENBANK_PATENT 1 1535 4931.012.1-F_at 0.547302 0.54730211 6.272335 6E−09 4931.012. NM_002533.2 BQ930348.1 EST 1 1536 10010.007.1-E_at −0.54712 0.54711818 6.269326 6E−09 10010.007 NM_004180.2 AI525053.1 EST 1 1537 11065.003.1-B_at 0.54698 0.54697977 6.267063 6E−09 11065.003 NM_181802.1 CS138819.1 GENBANK_PATENT 5 1538 3925.016.1-C_at 0.546859 0.5468594 6.265095 6E−09 3925.016. NM_203399.1 BE888426.1 EST 1 1539 7170.017.1-C_at 0.546805 0.54680477 6.264203 6E−09 7170.017. NM_153649.2 BF574676.1 EST 1 1540 301.011.1-F_at −0.54668 0.54668114 6.262183 6E−09 301.011.1 NM_000700.1 BG435248.1 EST 1 1541 57685.005.2-T_at −0.54663 0.54663145 6.261371 6E−09 57685.005 NM_020925.1 CQ721664.1 GENBANK_PATENT 1 1542 23015.014.1-T_at −0.54659 0.54658979 6.26069 6E−09 23015.014 NM_181076.2 DA928720.1 EST 1 1543 7153.002.3-T_at 0.546559 0.54655896 6.260187 6E−09 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 1544 2568.005.2-D_at −0.5465 0.5464996 6.259217 6E−09 2568.005. NM_014211.1 AK055205.1 mRNA 11 1545 2335.039.1-F_at 0.546413 0.5464132 6.257806 6E−09 2335.039. NM_212482.1 BP288118.1 EST 1 1546 10124.002.1-F_at −0.5464 0.54640453 6.257665 6E−09 10124.002 NM_001037164. BG178114.1 EST 6 1547 283299.003.1-D −0.5461 0.54610398 6.252759 6E−09 283299.00 XM_498506.1 XM_932188.1 REFSEQ 1 1548 4781.013.1-T_at −0.54585 0.54585341 6.248672 6E−09 4781.013. NM_005596.1 DA750893.1 EST 1 1549 7170.012.2-D_at 0.545774 0.545774 6.247378 6E−09 7170.012. NM_153649.2 DA893534.1 EST 1 1550 667.014.1-T_at −0.54573 0.54572906 6.246645 6E−09 667.014.1 NM_183380.1 CQ851391.1 GENBANK_PATENT 1 1551 4781.009.2-D_at −0.54569 0.54568951 6.246 6E−09 4781.009. NM_005596.1 CQ732556.1 GENBANK_PATENT 1 1552 7169.001.1-D_at −0.54565 0.54565203 6.24539 6E−09 7169.001. NM_213674.1 BM809268.1 EST 4 1553 2161.001.1-T_at 0.545644 0.54564352 6.245251 6E−09 2161.001. NM_000505.2 AX147449.1 GENBANK_PATENT 30 1554 1308.001.1-F_at −0.5456 0.54560226 6.244578 6E−09 1308.001. NM_130778.1 BM773425.1 EST 1 1555 7168.012.2-D_at −0.54541 0.54540889 6.241428 7E−09 7168.012. NM_001018020. AK129882.1 mRNA 2 1556 10010.004.1-E_at −0.54541 0.54540884 6.241427 7E−09 10010.004 NM_004180.2 BM750784.1 EST 1 1557 54443.009.1-D_at 0.545394 0.54539371 6.241181 7E−09 54443.009 NM_018685.2 DA242046.1 EST 1 1558 7039.002.1-D_at −0.54538 0.54537813 6.240927 7E−09 7039.002. NM_003236.1 AF149096.1 mRNA 2 1559 57447.041.1-B_at −0.54524 0.54523712 6.23863 7E−09 57447.041 NM_201535.1 DA295124.1 EST 1 1560 4281.007.1-B_at −0.54521 0.54521491 6.238269 7E−09 4281.007. NM_033290.1 AY540023.1 mRNA 2 1561 301.009.1-T_at −0.54517 0.54516544 6.237463 7E−09 301.009.1 NM_000700.1 CD357777.1 EST 2 1562 9055.014.1-F_at 0.545101 0.54510063 6.236408 7E−09 9055.014. NM_003981.2 BE300335.1 EST 1 1563 79971.013.1-T_at −0.54495 0.54494911 6.233942 7E−09 79971.013 NM_001002292. DA878291.1 EST 1 1564 11065.003.2-T_at 0.544945 0.5449453 6.23388 7E−09 11065.003 NM_181802.1 CS138819.1 GENBANK_PATENT 5 1565 7113.009.1-E_at −0.54493 0.54493426 6.233701 7E−09 7113.009. NM_005656.2 DA873416.1 EST 1 1566 51203.002.2-T_at 0.544867 0.54486653 6.232599 7E−09 51203.002 NM_016359.2 AL561514.3 EST 1 1567 7170.006.1-B_at 0.54486 0.54486029 6.232497 7E−09 7170.006. NM_153649.2 DB003864.1 EST 1 1568 80034.002.1-T_at −0.54484 0.54484345 6.232223 7E−09 80034.002 NM_024969.2 DA769284.1 EST 1 1569 1345.012.1-D_at 0.544806 0.54480624 6.231618 7E−09 1345.012. NM_004374.2 DB564533.1 EST 1 1570 8321.004.1-T_at −0.54478 0.54477916 6.231178 7E−09 8321.004. NM_003505.1 AA249884.1 EST 1 1571 10461.001.1-T_at −0.54469 0.54468608 6.229664 7E−09 10461.001 NM_006343.2 CQ760423.1 GENBANK_PATENT 4 1572 4601.010.1-T_at −0.54466 0.54466418 6.229308 7E−09 4601.010. NM_130439.3 CS031066.1 GENBANK_PATENT 3 1573 3709.004.1-E_at −0.54444 0.54444277 6.225708 7E−09 3709.004. NM_002223.1 BP364657.1 EST 1 1574 4781.017.2-T_at −0.5444 0.54440035 6.225019 7E−09 4781.017. NM_005596.1 DR002043.1 EST 1 1575 5621.010.1-B_at −0.54431 0.54431029 6.223555 7E−09 5621.010. NM_000311.2 DA174560.1 EST 1 1576 54763.001.1-T_at −0.54431 0.54430594 6.223485 7E−09 54763.001 NM_017578.2 BI465233.1 EST 4 1577 306.003.1-B_at −0.54429 0.54428587 6.223159 7E−09 306.003.1 NM_005139.1 CQ721707.1 GENBANK_PATENT 1 1578 2335.035.1-C_at 0.544238 0.54423813 6.222383 7E−09 2335.035. NM_212482.1 CX755647.1 EST 1 1579 4601.015.1-T_at −0.54414 0.54413917 6.220776 7E−09 4601.015. NM_130439.3 DA279837.1 EST 1 1580 7168.038.1-D_at −0.54409 0.54408836 6.219951 7E−09 7168.038. NM_001018020. AK092573.1 mRNA 5 1581 55732.003.1-T_at 0.543852 0.54385205 6.216114 7E−09 55732.003 NM_018186.2 DA733233.1 EST 2 1582 23266.001.1-T_at −0.54381 0.54380864 6.21541 7E−09 23266.001 NM_012302.2 AK123422.1 mRNA 2 1583 4288.006.2-E_at 0.543777 0.54377742 6.214903 7E−09 4288.006. NM_002417.2 BP363635.1 EST 1 1584 4781.013.2-D_at −0.54375 0.54374747 6.214417 7E−09 4781.013. NM_005596.1 DA750893.1 EST 1 1585 259266.001.1-B 0.543672 0.54367202 6.213193 7E−09 259266.00 NM_018136.2 BC034607.1 mRNA 7 1586 7170.029.1-F_at 0.543574 0.54357435 6.211608 8E−09 7170.029. NM_153649.2 BM011010.1 EST 1 1587 51201.007.1-T_at −0.54346 0.5434567 6.2097 8E−09 51201.007 NM_016353.2 BF541714.1 EST 1 1588 7169.002.1-F_at −0.54328 0.54327991 6.206834 8E−09 7169.002. NM_213674.1 AL555921.3 EST 1 1589 8404.028.1-T_at −0.54323 0.5432313 6.206046 8E−09 8404.028. NM_004684.2 CQ727530.1 GENBANK_PATENT 1 1590 4781.015.1-T_at −0.54315 0.54314788 6.204695 8E−09 4781.015. NM_005596.1 DN995118.1 EST 1 1591 9055.012.1-T_at 0.543077 0.54307679 6.203543 8E−09 9055.012. NM_003981.2 BE298728.1 EST 1 1592 2893.004.1-T_at −0.5429 0.54289557 6.200607 8E−09 2893.004. NM_000829.1 DA066848.1 EST 1 1593 91653.015.1-T_at −0.54284 0.54283984 6.199705 8E−09 91653.015 NM_033254.2 R75666.1 EST 1 1594 10010.001.1-T_at −0.54281 0.54280637 6.199163 8E−09 10010.001 NM_004180.2 DA670701.1 EST 6 1595 1410.003.2-T_at −0.54281 0.54280581 6.199154 8E−09 1410.003. NM_001885.1 AX899079.1 GENBANK_PATENT 1 1596 6595.013.1-B_at −0.54268 0.54268082 6.19713 8E−09 6595.013. NM_003070.3 DA825858.1 EST 1 1597 4601.009.1-T_at −0.54264 0.54264498 6.19655 8E−09 4601.009. NM_130439.3 BE789186.1 EST 1 1598 23015.009.1-E_at −0.54245 0.5424498 6.193392 8E−09 23015.009 NM_181076.2 CA943083.1 EST 1 1599 2335.024.1-T_at 0.542425 0.54242468 6.192986 8E−09 2335.024. NM_212482.1 CQ731573.1 GENBANK_PATENT 1 1600 23650.009.1-F_at −0.54242 0.54242338 6.192965 8E−09 23650.009 NM_058193.1 BF836741.1 EST 1 1601 11254.001.1-F_at −0.54238 0.54237719 6.192217 8E−09 11254.001 NM_007231.1 BE819593.1 EST 1 1602 7286.002.1-T_at 0.542342 0.5423416 6.191642 8E−09 7286.002. NM_020127.1 BP315579.1 EST 1 1603 4931.004.1-T_at 0.54224 0.54223963 6.189993 8E−09 4931.004. NM_002533.2 BM693264.1 EST 1 1604 7113.005.1-E_at −0.54224 0.5422385 6.189974 8E−09 7113.005. NM_005656.2 DA865300.1 EST 1 1605 150572.004.1-F −0.54223 0.54222998 6.189837 8E−09 150572.00 NM_198274.2 BF790590.1 EST 1 1606 57447.002.1-C_at −0.54216 0.54215776 6.188669 8E−09 57447.002 NM_201535.1 BF526188.1 EST 1 1607 1410.002.2-T_at −0.54199 0.54198899 6.185941 8E−09 1410.002. NM_001885.1 AX899073.1 GENBANK_PATENT 4 1608 4316.001.1-F_at −0.54197 0.54197342 6.185689 8E−09 4316.001. NM_002423.3 CQ733055.1 GENBANK_PATENT 1 1609 254042.002.1-E −0.54193 0.54192668 6.184934 8E−09 254042.00 NM_199227.1 AX188221.1 GENBANK_PATENT 7 1610 79971.006.2-B_at −0.54193 0.54192511 6.184909 8E−09 79971.006 NM_001002292. DA048370.1 EST 1 1611 1396.001.1-T_at 0.54189 0.54189009 6.184343 8E−09 1396.001. NM_001311.3 N46592.1 EST 2 1612 7153.002.3-D_at 0.541626 0.54162631 6.180082 9E−09 7153.002. NM_001067.2 CQ735949.1 GENBANK_PATENT 114 1613 54443.001.1-F_at 0.541435 0.54143463 6.176988 9E−09 54443.001 NM_018685.2 BC070066.1 mRNA 10 1614 142.012.1-F_at 0.541335 0.54133459 6.175374 9E−09 142.012.1 NM_001618.2 BG900662.1 EST 1 1615 301.013.1-F_at −0.54115 0.54115484 6.172474 9E−09 301.013.1 NM_000700.1 BF130804.1 EST 1 1616 152015.004.1-E −0.54097 0.54096565 6.169423 9E−09 152015.00 NM_001012337. BC015413.1 mRNA 2 1617 8857.001.1-F_at −0.54089 0.54089094 6.168218 9E−09 8857.001. NM_003890.1 CQ730859.1 GENBANK_PATENT 1 1618 6203.002.1-B_at −0.54088 0.54087544 6.167968 9E−09 6203.002. NM_001013.3 AX969894.1 GENBANK_PATENT 1 1619 7168.010.1-D_at −0.54079 0.54078858 6.166568 9E−09 7168.010. NM_001018020. CD556048.1 EST 1 1620 57447.051.2-C_at −0.54076 0.54076391 6.166171 9E−09 57447.051 NM_201535.1 BX460053.2 EST 1 1621 4288.006.1-T_at 0.540756 0.54075554 6.166036 9E−09 4288.006. NM_002417.2 BP363635.1 EST 1 1622 54443.013.1-T_at 0.54066 0.54065959 6.16449 9E−09 54443.013 NM_018685.2 BX410228.2 EST 1 1623 9055.017.1-E_at 0.540557 0.54055744 6.162844 9E−09 9055.017. NM_003981.2 DB031145.1 EST 1 1624 55732.004.1-T_at 0.540487 0.54048721 6.161713 9E−09 55732.004 NM_018186.2 BF216714.1 EST 1 1625 9413.003.2-F_at −0.54047 0.5404689 6.161418 9E−09 9413.003. NM_004816.2 BX641153.1 mRNA 10 1626 4629.015.1-B_at −0.54046 0.5404569 6.161225 9E−09 4629.015. NM_022844.1 DB284318.1 EST 1 1627 84766.002.2-C_at −0.54045 0.54045424 6.161182 9E−09 84766.002 NM_032680.2 XM_498532.1 REFSEQ 1 1628 11065.008.1-T_at 0.540347 0.5403468 6.159452 9E−09 11065.008 NM_181802.1 NM_181800.1 REFSEQ 5 1629 81704.013.8-F_at −0.54034 0.5403434 6.159398 9E−09 81704.013 NM_203447.1 CQ723361.1 GENBANK_PATENT 1 1630 667.016.1-T_at −0.54033 0.54032607 6.159119 9E−09 667.016.1 NM_183380.1 DB013737.1 EST 1 1631 29997.004.1-F_at −0.5403 0.54030048 6.158707 1E−08 29997.004 NM_015710.3 BU154441.1 EST 1 1632 2824.001.3-B_at −0.5403 0.54029788 6.158665 1E−08 2824.001. NM_001001994. CQ717842.1 GENBANK_PATENT 1 1633 57447.004.1-B_at −0.54026 0.54025744 6.158014 1E−08 57447.004 NM_201535.1 CD515320.1 EST 2 1634 2982.003.1-T_at −0.54014 0.54014125 6.156144 1E−08 2982.003. NM_000856.2 DB179470.1 EST 1 1635 4288.005.1-T_at 0.539862 0.53986198 6.151651 1E−08 4288.005. NM_002417.2 BM455229.1 EST 1 1636 10957.018.1-F_at −0.53982 0.53982225 6.151012 1E−08 10957.018 NM_006813.1 AI547283.1 EST 1 1637 2568.006.2-B_at −0.53981 0.53980996 6.150815 1E−08 2568.006. NM_014211.1 CD385249.1 EST 1 1638 10051.015.2-F_at 0.539796 0.53979645 6.150597 1E−08 10051.015 NM_001002799. BM010546.1 EST 1 1639 2.007.1-F_at −0.53972 0.53972151 6.149392 1E−08 2.007.1 NM_000014.4 BG547500.1 EST 1 1640 5803.003.1-T_at −0.53965 0.53964973 6.148239 1E−08 5803.003. NM_002851.1 CD672822.1 EST 1 Table 3. Polynucleotides probe sets that harbor different values between malignant and benign tumors.

In order to find subsets of smaller amounts of polynucleotide probe sets to be used for classifying the benign or malignant status of tissues, prediction rules were constructed using the top 50, top 100, top 150 and top 200 polynucleotide probe sets of Table 4 (with identifiers no 1 to no 50, no 1 to no 100, no 1 to no 150 and no 1 to no 200). The estimated prediction accuracies by leave-one-out crossvalidation were as follows:

-   -   using the top 50 polynucleotide probe sets: 1 out of 24 patients         with benign status were misclassified and 7 out of 70 patients         with malignant status.     -   using the top 100 polynucleotide probe sets: 1 out of 24         patients with benign status were misclassified and 5 out of 70         patients with malignant status.     -   using the top 150 polynucleotide probe sets: 0 out of 24         patients with benign status were misclassified and 6 out of 70         patients with malignant status.     -   using the top 200 polynucleotide probe sets: 0 out of 24         patients with benign status were misclassified and 4 out of 70         patients with malignant status.

Table 5 contains the average profiles of the preferred 1,228 signature polynucleotide probe sets with p<10e-9 measured on the 24 benign and 70 malignant tissues of the training set. Thus, the preferred set of probes to be used for predicting the malignant status of a tissue of a future patient is reported here.

An additional 100 patients referred at the Institut Gustave Roussy for a clinical or radiological breast lesion in 2006-2007 for which a FNA was performed to assess the diagnosis of the breast lesion has been analyzed by exon profiling. The prediction rule using the preferred 1228 signature polynucleotide probe sets has been applied to this independent validation set.

The inventors have developed an optimal prediction rule based on the methodology reported previously. The preferred p-value threshold for defining signature genes was p<10e-9. When using leave-one-out cross-validation to estimate the prediction accuracy of the prediction rule with this particular threshold, the inventors accurately classified all the samples as shown in FIG. 4. This corresponds to a sensitivity of 100% and a specificity of 100%. Table 5 contains the average profiles of the preferred 1228 signature probe sets with p<10e-9 measured on the 20 benign and 74 malignant tissues of the training set. The probes with positive correlation are those which have increased expression in malignant tissues, those with negative correlation have increased expression in the benign tissues.

TABLE 4 Table 4. Probe sets used to construct molecular predictor (n = 1228). NO Probeset_Id Symbol RefSeq Location Transcrit Transcrit Transcrit2 Transcrit2 1 1756.022.2-C_at DMD NM_000109 Xp21.2 1756.022.2 10010.002.1 1756.22 1756.22 2 1756.029.1-D_at DMD NM_000110 Xp21.2 1756.029.1 10010.004.1 1756.29 1756.29 3 1756.026.1-C_at DMD NM_000111 Xp21.2 1756.026.1 10051.005.3 1756.26 1756.26 4 1756.022.4-T_at DMD NM_000112 Xp21.2 1756.022.4 10051.008.1 1756.22 1756.22 5 1756.011.1-B_at DMD NM_000113 Xp21.2 1756.011.1 10051.016.1 1756.11 1756.11 6 1308.008.1-C_at COL17A1 NM_000494 10q24.3 1308.008.1 10124.002.1 1308.8 1308.8 7 1756.022.3-F_at DMD NM_000114 Xp21.2 1756.022.3 10124.003.1 1756.22 3861.20 8 3861.020.1-D_at KRT14 NM_000526 17q12-q21 3861.020.1 10124.004.2 3861.20 4629.7 9 1756.011.1-F_at DMD NM_000115 Xp21.2 1756.011.1 10144.017.3 1756.11 1756.24 10 4629.007.1-F_at MYH11 NM_001040113 16p13.11 4629.007.1 10144.020.2 4629.7 3861.19 11 1756.022.4-B_at DMD NM_000116 Xp21.2 1756.022.4 10144.021.1 1756.22 3861.1 12 1756.024.1-F_at DMD NM_000117 Xp21.2 1756.024.1 10253.001.1 1756.24 4629.20 13 3861.019.1-T_at KRT14 NM_000526 17q12-q21 3861.019.1 10253.003.1 3861.19 1756.27 14 1756.026.1-T_at DMD NM_000118 Xp21.2 1756.026.1 10253.004.1 1756.26 3861.13 15 1756.022.1-B_at DMD NM_000119 Xp21.2 1756.022.1 1033.002.1 1756.22 3861.22 16 3861.001.1-T_at KRT14 NM_000526 17q12-q21 3861.001.1 10461.002.1 3861.1 3868.4 17 1308.008.1-T_at COL17A1 NM_000495 10q24.3 1308.008.1 10461.002.2 1308.8 4629.15 18 4629.020.1-C_at MYH11 NM_001040114 16p13.11 4629.020.1 1058.004.2 4629.20 6422.2 19 1756.027.1-T_at DMD NM_000120 Xp21.2 1756.027.1 10580.012.1 1756.27 1308.3 20 3861.013.1-T_at KRT14 NM_000526 17q12-q21 3861.013.1 1062.001.6 3861.13 3868.5 21 4629.020.1-F_at MYH11 NM_001040115 16p13.11 4629.020.1 1063.001.1 4629.20 1308.7 22 3861.001.1-B_at KRT14 NM_000526 17q12-q21 3861.001.1 1063.002.1 3861.1 1308.9 23 1756.022.4-F_at DMD NM_000121 Xp21.2 1756.022.4 11065.003.1 1756.22 3861.7 24 1756.026.1-F_at DMD NM_000122 Xp21.2 1756.026.1 11065.004.1 1756.26 4629.16 25 1756.022.2-T_at DMD NM_000123 Xp21.2 1756.022.2 11065.005.1 1756.22 3084.7 26 1756.022.2-F_at DMD NM_000124 Xp21.2 1756.022.2 11065.005.2 1756.22 26289.3 27 3861.022.1-B_at KRT14 NM_000526 17q12-q21 3861.022.1 11065.008.1 3861.22 1756.28 28 3868.004.1-D_at KRT16 NM_005557 17q12-q21 3868.004.1 11065.009.1 3868.4 4629.21 29 4629.015.1-C_at MYH11 NM_001040116 16p13.11 4629.015.1 11197.001.1 4629.15 5764.1 30 6422.002.1-E_at SFRP1 NM_003012 8p12-p11.1 6422.002.1 115207.002.1 6422.2 3815.2 31 3861.001.1-D_at KRT14 NM_000526 17q12-q21 3861.001.1 115908.002.1 3861.1 3852.20 32 1756.022.1-F_at DMD NM_000125 Xp21.2 1756.022.1 116369.006.4 1756.22 128553.3 33 1308.003.1-T_at COL17A1 NM_000496 10q24.3 1308.003.1 120.005.2 1308.3 4629.5 34 3868.005.1-B_at KRT16 NM_005557 17q12-q21 3868.005.1 1264.003.1 3868.5 4629.10 35 1308.007.1-F_at COL17A1 NM_000497 10q24.3 1308.007.1 1264.006.1 1308.7 6422.1 36 1308.009.1-F_at COL17A1 NM_000498 10q24.3 1308.009.1 1264.007.1 1308.9 3861.8 37 3861.007.1-E_at KRT14 NM_000526 17q12-q21 3861.007.1 128553.003.1 3861.7 1756.30 38 4629.016.1-D_at MYH11 NM_001040117 16p13.11 4629.016.1 130497.001.2 4629.16 3084.9 39 3084.007.1-F_at NRG1 NM_004495 8p12 3084.007.1 1308.001.1 3084.7 26289.2 40 3861.007.1-F_at KRT14 NM_000526 17q12-q21 3861.007.1 1308.002.1 3861.7 23336.1 41 26289.003.1- AK5 NM_012093 1p31 26289.003.1 1308.003.1 26289.3 3852.12 E_at 42 1756.028.1-T_at DMD NM_000126 Xp21.2 1756.028.1 1308.004.1 1756.28 26289.12 43 4629.021.1-E_at MYH11 NM_001040118 16p13.11 4629.021.1 1308.007.1 4629.21 23336.3 44 4629.020.1-D_at MYH11 NM_001040119 16p13.11 4629.020.1 1308.008.1 4629.20 26289.7 45 5764.001.1-F_at PTN NM_002825 7q33-q34 5764.001.1 1308.009.1 5764.1 84417.1 46 3815.002.3-F_at KIT NM_000222 4q11-q12 3815.002.3 1398.001.1 3815.2 3861.18 47 3852.020.1-T_at KRT5 NM_000424 12q12-q13 3852.020.1 140446.004.1 3852.20 3852.4 48 4629.007.1-E_at MYH11 NM_001040120 16p13.11 4629.007.1 140807.003.1 4629.7 90865.6 49 128553.003.1-F TSHZ2 NM_173485 20q13.2 128553.003.1 140885.010.1 128553.3 1264.3 50 26289.003.1- AK5 NM_012094 1p31 26289.003.1 140885.010.2 26289.3 26289.10 F_at 51 3815.002.2-F_at KIT NM_000223 4q11-q12 3815.002.2 140885.010.3 3815.2 1908.2 52 1756.029.1-B_at DMD NM_000127 Xp21.2 1756.029.1 140885.011.1 1756.29 3852.8 53 4629.005.1-E_at MYH11 NM_001040121 16p13.11 4629.005.1 140885.013.1 4629.5 4915.11 54 4629.010.1-B_at MYH11 NM_001040122 16p13.11 4629.010.1 140885.014.1 4629.10 5288.1 55 6422.001.1-T_at SFRP1 NM_003012 8p12-p11.1 6422.001.1 1410.001.1 6422.1 3852.6 56 5764.001.1-E_at PTN NM_002825 7q33-q34 5764.001.1 1410.002.2 5764.1 9413.3 57 3861.008.1-F_at KRT14 NM_000526 17q12-q21 3861.008.1 1410.003.2 3861.8 3815.1 58 1756.030.2-T_at DMD NM_000128 Xp21.2 1756.030.2 1410.004.2 1756.30 79937.1 59 3084.009.1-B_at NRG1 NM_004496 8p12 3084.009.1 1410.005.1 3084.9 4915.12 60 26289.002.1- AK5 NM_012095 1p31 26289.002.1 1410.006.1 26289.2 26289.5 T_at 61 1756.022.5-B_at DMD NM_000129 Xp21.2 1756.022.5 1410.007.1 1756.22 4311.9 62 4629.007.1-D_at MYH11 NM_001040123 16p13.11 4629.007.1 1410.007.2 4629.7 26289.6 63 23336.001.1- DMN NM_015286 15q26.3 23336.001.1 1410.008.1 23336.1 5288.3 C_at 64 1308.003.1-D_at COL17A1 NM_000499 10q24.3 1308.003.1 1410.009.1 1308.3 26289.4 65 1756.022.3-T_at DMD NM_000130 Xp21.2 1756.022.3 1410.010.1 1756.22 79192.2 66 3861.020.1-T_at KRT14 NM_000526 17q12-q21 3861.020.1 1410.011.1 3861.20 4638.6 67 3861.022.1-C_at KRT14 NM_000526 17q12-q21 3861.022.1 147495.005.1 3861.22 3084.8 68 3852.012.2-B_at KRT5 NM_000424 12q12-q13 3852.012.2 147495.006.1 3852.12 4311.1 69 26289.012.1- AK5 NM_012096 1p31 26289.012.1 147495.008.1 26289.12 3852.22 E_at 70 23336.003.1- DMN NM_015287 15q26.3 23336.003.1 147495.009.1 23336.3 23194.3 T_at 71 26289.007.1- AK5 NM_012097 1p31 26289.007.1 147804.004.1 26289.7 65983.9 B_at 72 84417.001.1- C2orf40 NM_032411 2q12.2 84417.001.1 152015.004.1 84417.1 1410.7 T_at 73 3861.018.1-D_at KRT14 NM_000526 17q12-q21 3861.018.1 152015.005.2 3861.18 7373.3 74 3852.004.1-B_at KRT5 NM_000424 12q12-q13 3852.004.1 162605.001.4 3852.4 10010.2 75 90865.006.1- IL33 NM_033439 9p24.1 90865.006.1 1717.007.1 90865.6 59.26 B_at 76 4629.021.1-F_at MYH11 NM_001040124 16p13.11 4629.021.1 1717.009.2 4629.21 3872.7 77 3861.018.1-T_at KRT14 NM_000526 17q12-q21 3861.018.1 1756.002.2 3861.18 84668.2 78 1756.022.1-T_at DMD NM_000131 Xp21.2 1756.022.1 1756.003.1 1756.22 1756.2 79 1264.003.1-B_at CNN1 NM_001299 19p13.2-p13.1 1264.003.1 1756.009.1 1264.3 57447.33 80 26289.010.1- AK5 NM_012098 1p31 26289.010.1 1756.011.1 26289.10 26289.9 E_at 81 3861.001.1-F_at KRT14 NM_000526 17q12-q21 3861.001.1 1756.013.1 3861.1 3872.6 82 1908.002.1-T_at EDN3 NM_001729 20q13.2-q13.3 1908.002.1 1756.022.1 1908.2 667.21 83 4629.007.1-C_at MYH11 NM_001040125 16p13.11 4629.007.1 1756.022.2 4629.7 57447.27 84 1756.022.5-T_at DMD NM_000132 Xp21.2 1756.022.5 1756.022.3 1756.22 56477.1 85 3815.002.4-B_at KIT NM_000224 4q11-q12 3815.002.4 1756.022.4 3815.2 26289.8 86 1756.022.2-B_at DMD NM_000133 Xp21.2 1756.022.2 1756.022.5 1756.22 59.24 87 1756.027.1-B_at DMD NM_000134 Xp21.2 1756.027.1 1756.024.1 1756.27 3084.4 88 3852.008.2-T_at KRT5 NM_000424 12q12-q13 3852.008.2 1756.026.1 3852.8 27122.14 89 6422.001.1-E_at SFRP1 NM_003012 8p12-p11.1 6422.001.1 1756.027.1 6422.1 286887.3 90 3861.022.1-F_at KRT14 NM_000526 17q12-q21 3861.022.1 1756.028.1 3861.22 3872.9 91 4915.011.1-D_at NTRK2 NM_001007097 9q22.1 4915.011.1 1756.029.1 4915.11 59.14 92 5288.001.1-F_at PIK3C2G NM_004570 12p12 5288.001.1 1756.030.2 5288.1 403340.1 93 3861.007.1-T_at KRT14 NM_000526 17q12-q21 3861.007.1 1908.001.1 3861.7 3852.14 94 3852.006.1-C_at KRT5 NM_000424 12q12-q13 3852.006.1 1908.002.1 3852.6 27122.1 95 9413.003.1-T_at C9orf61 NM_004816 9q13-q21 9413.003.1 1959.002.1 9413.3 8626.5 96 3861.020.1-C_at KRT14 NM_000526 17q12-q21 3861.020.1 1959.003.1 3861.20 84668.4 97 1308.008.1-D_at COL17A1 NM_000500 10q24.3 1308.008.1 2.002.1 1308.8 57447.31 98 23336.001.1- DMN NM_015288 15q26.3 23336.001.1 2.005.1 23336.1 3084.12 T_at 99 3815.001.1-F_at KIT NM_000225 4q11-q12 3815.001.1 2.013.1 3815.1 3852.5 100 1756.022.5-F_at DMD NM_000135 Xp21.2 1756.022.5 2.018.1 1756.22 3866.3 101 79937.001.1- CNTNAP3 NM_033655 9p13.1 79937.001.1 2.022.1 79937.1 3866.8 T_at 102 4915.012.1-E_at NTRK2 NM_001007098 9q22.1 4915.012.1 2.024.1 4915.12 3852.9 103 3861.022.1-T_at KRT14 NM_000526 17q12-q21 3861.022.1 2.025.1 3861.22 59.15 104 26289.005.1- AK5 NM_012099 1p31 26289.005.1 2115.001.2 26289.5 79937.2 T_at 105 3815.002.3-B_at KIT NM_000226 4q11-q12 3815.002.3 2115.003.1 3815.2 7153.2 106 4311.009.1-F_at MME NM_000902 3q25.1-q25.2 4311.009.1 2115.006.1 4311.9 4281.10 107 26289.006.1- AK5 NM_012100 1p31 26289.006.1 2115.007.1 26289.6 59.8 T_at 108 5288.003.1-F_at PIK3C2G NM_004570 12p12 5288.003.1 2115.008.1 5288.3 1264.7 109 4629.020.1-B_at MYH11 NM_001040126 16p13.11 4629.020.1 2115.011.1 4629.20 3084.2 110 26289.007.1- AK5 NM_012101 1p31 26289.007.1 2115.012.1 26289.7 5137.4 D_at 111 3815.002.1-B_at KIT NM_000227 4q11-q12 3815.002.1 2115.014.1 3815.2 4629.22 112 26289.004.1- AK5 NM_012102 1p31 26289.004.1 2115.015.1 26289.4 3852.13 T_at 113 79192.002.2- IRX1 NM_024337 5p15.3 79192.002.2 2119.005.1 79192.2 59.12 T_at 114 4638.006.1-D_at MYLK NM_005965 3q21 4638.006.1 2119.006.1 4638.6 23336.2 115 3084.008.1-F_at NRG1 NM_004497 8p12 3084.008.1 221120.006.1 3084.8 3866.11 116 4311.001.2-T_at MME NM_000903 3q25.1-q25.2 4311.001.2 2232.014.1 4311.1 59.31 117 3815.002.1-D_at KIT NM_000228 4q11-q12 3815.002.1 22974.007.1 3815.2 57447.30 118 4629.020.1-T_at MYH11 NM_001040127 16p13.11 4629.020.1 22974.008.1 4629.20 1410.3 119 1756.026.1-B_at DMD NM_000136 Xp21.2 1756.026.1 23092.004.1 1756.26 3866.9 120 3852.022.1-T_at KRT5 NM_000424 12q12-q13 3852.022.1 23194.003.1 3852.22 440421.1 121 4629.015.1-D_at MYH11 NM_001040128 16p13.11 4629.015.1 23266.001.3 4629.15 57447.41 122 26289.007.1- AK5 NM_012103 1p31 26289.007.1 23266.008.1 26289.7 3872.10 C_at 123 23194.003.1- FBXL7 NM_012304 5p15.1 23194.003.1 23266.008.2 23194.3 4629.6 C_at 124 3815.002.1-F_at KIT NM_000229 4q11-q12 3815.002.1 2327.002.1 3815.2 3866.12 125 26289.007.1- AK5 NM_012104 1p31 26289.007.1 2327.002.2 26289.7 57447.21 T_at 126 65983.009.1- GRAMD3 NM_023927 5q23.2 65983.009.1 2327.003.4 65983.9 8626.7 B_at 127 23336.001.1- DMN NM_015289 15q26.3 23336.001.1 23284.007.1 23336.1 72.1 F_at 128 1410.007.2-B_at CRYAB NM_001885 11q22.3-q23.1 1410.007.2 23321.014.1 1410.7 3866.6 129 1756.029.1-F_at DMD NM_000137 Xp21.2 1756.029.1 23336.001.1 1756.29 65983.8 130 7373.003.6-C_at COL14A1 NM_021110 8q23 7373.003.6 23336.002.1 7373.3 65983.13 131 10010.002.1- TANK NM_004180 2q24-q31 10010.002.1 23336.003.1 10010.2 27122.7 E_at 132 59.026.1-B_at ACTA2 NM_001613 10q23.3 59.026.1 2335.002.1 59.26 59.9 133 4915.011.1-F_at NTRK2 NM_001007099 9q22.1 4915.011.1 2335.005.1 4915.11 59.23 134 3872.007.1-D_at KRT17 NM_000422 17q12-q21 3872.007.1 2335.006.1 3872.7 1908.1 135 26289.002.1- AK5 NM_012105 1p31 26289.002.1 2335.006.2 26289.2 4915.8 D_at 136 84668.002.1- FAM126A NM_032581 7p15.3 84668.002.1 2335.009.1 84668.2 57447.35 C_at 137 1756.002.2-T_at DMD NM_000138 Xp21.2 1756.002.2 2335.013.1 1756.2 667.22 138 57447.033.1- NDRG2 NM_016250 14q11.2 57447.033.1 2335.016.1 57447.33 2115.1 C_at 139 26289.009.1- AK5 NM_012106 1p31 26289.009.1 2335.017.1 26289.9 27303.4 E_at 140 3872.006.1-F_at KRT17 NM_000422 17q12-q21 3872.006.1 2335.024.2 3872.6 59.3 141 3861.022.1-D_at KRT14 NM_000526 17q12-q21 3861.022.1 2335.025.1 3861.22 65983.4 142 3861.020.1-B_at KRT14 NM_000526 17q12-q21 3861.020.1 2335.025.3 3861.20 26289.13 143 667.021.1-B_at DST NM_001723 6p12.1 667.021.1 2335.027.1 667.21 3866.4 144 57447.027.1- NDRG2 NM_016251 14q11.2 57447.027.1 2335.028.1 57447.27 57447.37 F_at 145 56477.001.1- CCL28 NM_148672 5p12 56477.001.1 2335.032.1 56477.1 59.22 D_at 146 26289.008.1- AK5 NM_012107 1p31 26289.008.1 2335.035.1 26289.8 147495.8 F_at 147 59.024.2-D_at ACTA2 NM_001613 10q23.3 59.024.2 2335.045.1 59.24 2.18 148 4629.005.1-T_at MYH11 NM_001040129 16p13.11 4629.005.1 2335.053.1 4629.5 140807.3 149 3815.002.1-T_at KIT NM_000230 4q11-q12 3815.002.1 23650.003.1 3815.2 2115.8 150 23336.001.1- DMN NM_015290 15q26.3 23336.001.1 23650.005.1 23336.1 57447.34 B_at 151 3084.004.2-F_at NRG1 NM_004498 8p12 3084.004.2 23650.011.1 3084.4 3866.1 152 27122.014.2- DKK3 NM_001018057 11p15.2 27122.014.2 23650.011.2 27122.14 1959.3 T_at 153 26289.008.1- AK5 NM_012108 1p31 26289.008.1 23650.019.1 26289.8 389432.2 C_at 154 286887.003.2-B KRT6C NM_173086 12q13.13 286887.003.2 23650.020.1 286887.3 389734.1 155 4629.005.1-F_at MYH11 NM_001040130 16p13.11 4629.005.1 24137.004.1 4629.5 3855.1 156 3872.009.1-T_at KRT17 NM_000422 17q12-q21 3872.009.1 244.003.1 3872.9 3084.6 157 59.014.2-D_at ACTA2 NM_001613 10q23.3 59.014.2 244.011.1 59.14 2115.11 158 403340.001.2-B MGC70870 NM_203481 — 403340.001.2 244.012.1 403340.1 65983.5 159 3852.014.1-F_at KRT5 NM_000424 12q12-q13 3852.014.1 2487.001.1 3852.14 2119.6 160 27122.001.1- DKK3 NM_001018058 11p15.2 27122.001.1 2568.001.1 27122.1 3866.7 T_at 161 3815.002.3-T_at KIT NM_000231 4q11-q12 3815.002.3 2568.001.2 3815.2 3866.13 162 3852.008.1-E_at KRT5 NM_000424 12q12-q13 3852.008.1 2568.002.1 3852.8 27122.13 163 26289.012.1- AK5 NM_012109 1p31 26289.012.1 2568.002.2 26289.12 27122.6 T_at 164 26289.007.1- AK5 NM_012110 1p31 26289.007.1 2568.003.1 26289.7 4240.4 F_at 165 4638.006.1-T_at MYLK NM_005966 3q21 4638.006.1 2568.003.2 4638.6 3866.10 166 8626.005.1-B_at TP63 NM_003722 3q28 8626.005.1 2568.005.1 8626.5 7018.29 167 3815.002.4-T_at KIT NM_000232 4q11-q12 3815.002.4 2568.005.2 3815.2 1410.2 168 84668.004.1- FAM126A NM_032581 7p15.3 84668.004.1 2568.006.1 84668.4 59.34 F_at 169 3872.007.1-F_at KRT17 NM_000422 17q12-q21 3872.007.1 25802.003.1 3872.7 27122.19 170 57447.031.1- NDRG2 NM_016252 14q11.2 57447.031.1 25802.004.1 57447.31 5156.1 E_at 171 3084.012.3-T_at NRG1 NM_004499 8p12 3084.012.3 25802.008.1 3084.12 57447.10 172 3852.005.1-T_at KRT5 NM_000424 12q12-q13 3852.005.1 2582.007.2 3852.5 358.18 173 84417.001.2- C2orf40 NM_032411 2q12.2 84417.001.2 25925.001.1 84417.1 7373.1 T_at 174 3866.003.2-T_at KRT15 NM_002275 17q21.2 3866.003.2 25925.006.1 3866.3 57447.29 175 3866.008.1-C_at KRT15 NM_002275 17q21.2 3866.008.1 25925.007.1 3866.8 79068.10 176 3852.009.1-F_at KRT5 NM_000424 12q12-q13 3852.009.1 25925.008.1 3852.9 59.4 177 59.015.1-B_at ACTA2 NM_001613 10q23.3 59.015.1 25925.009.1 59.15 2115.12 178 79937.002.1- CNTNAP3 NM_033655 9p13.1 79937.002.1 25925.011.1 79937.2 2115.7 F_at 179 7153.002.6-F_at TOP2A NM_001067 17q21-q22 7153.002.6 259266.003.1 7153.2 59.40 180 4281.010.1-B_at MID1 NM_000381 Xp22 4281.010.1 26289.002.1 4281.10 130497.1 181 59.008.1-B_at ACTA2 NM_001613 10q23.3 59.008.1 26289.003.1 59.8 140885.14 182 1264.007.1-T_at CNN1 NM_001299 19p13.2-p13.1 1264.007.1 26289.004.1 1264.7 3866.5 183 3868.004.1-T_at KRT16 NM_005557 17q12-q21 3868.004.1 26289.005.1 3868.4 8404.28 184 3084.002.1-F_at NRG1 NM_004500 8p12 3084.002.1 26289.006.1 3084.2 3860.7 185 5137.004.2-T_at PDE1C NM_005020 7p15.1-p14.3 5137.004.2 26289.007.1 5137.4 4638.3 186 4629.022.1-T_at MYH11 NM_001040131 16p13.11 4629.022.1 26289.008.1 4629.22 25925.8 187 4915.011.1-T_at NTRK2 NM_001007100 9q22.1 4915.011.1 26289.009.1 4915.11 23650.11 188 3852.013.1-E_at KRT5 NM_000424 12q12-q13 3852.013.1 26289.010.1 3852.13 3852.17 189 59.012.2-T_at ACTA2 NM_001613 10q23.3 59.012.2 26289.012.1 59.12 4915.5 190 59.015.1-F_at ACTA2 NM_001613 10q23.3 59.015.1 26289.013.1 59.15 1756.3 191 4638.006.2-T_at MYLK NM_005967 3q21 4638.006.2 2707.002.1 4638.6 4638.14 192 23336.002.1- DMN NM_015291 15q26.3 23336.002.1 27122.001.1 23336.2 2707.2 B_at 193 3868.005.1-C_at KRT16 NM_005557 17q12-q21 3868.005.1 27122.002.1 3868.5 4638.11 194 3866.011.2-D_at KRT15 NM_002275 17q21.2 3866.011.2 27122.006.1 3866.11 7373.2 195 56477.001.1- CCL28 NM_148672 5p12 56477.001.1 27122.006.2 56477.1 5608.2 T_at 196 3815.001.1-T_at KIT NM_000233 4q11-q12 3815.001.1 27122.007.1 3815.1 1756.13 197 4311.001.1-T_at MME NM_000904 3q25.1-q25.2 4311.001.1 27122.013.1 4311.1 2115.6 198 1264.003.1-D_at CNN1 NM_001299 19p13.2-p13.1 1264.003.1 27122.014.1 1264.3 6376.1 199 59.031.1-T_at ACTA2 NM_001613 10q23.3 59.031.1 27122.014.2 59.31 8404.2 200 57447.030.1- NDRG2 NM_016253 14q11.2 57447.030.1 27122.016.1 57447.30 1264.6 B_at 201 1410.003.2-B_at CRYAB NM_001885 11q22.3-q23.1 1410.003.2 27122.017.1 1410.3 25925.1 202 3866.009.2-D_at KRT15 NM_002275 17q21.2 3866.009.2 27122.018.1 3866.9 8404.35 203 59.026.1-T_at ACTA2 NM_001613 10q23.3 59.026.1 27122.019.1 59.26 2.22 204 440421.001.1-T 440421.001.1 27303.004.1 440421.1 27122.16 205 1756.022.4-D_at DMD NM_000139 Xp21.2 1756.022.4 2824.001.2 1756.22 57447.25 206 65983.009.1- GRAMD3 NM_023927 5q23.2 65983.009.1 285203.001.2 65983.9 1717.7 D_at 207 57447.041.1- NDRG2 NM_016254 14q11.2 57447.041.1 286887.003.2 57447.41 9768.4 T_at 208 3872.010.2-D_at KRT17 NM_000422 17q12-q21 3872.010.2 2893.002.2 3872.10 1410.4 209 4629.006.2-T_at MYH11 NM_001040132 16p13.11 4629.006.2 2893.006.2 4629.6 2327.2 210 3861.018.1-F_at KRT14 NM_000526 17q12-q21 3861.018.1 29089.001.1 3861.18 1308.4 211 3815.002.2-T_at KIT NM_000234 4q11-q12 3815.002.2 29089.003.1 3815.2 2568.5 212 3866.012.2-D_at KRT15 NM_002275 17q21.2 3866.012.2 29127.002.1 3866.12 2568.1 213 57447.021.1- NDRG2 NM_016255 14q11.2 57447.021.1 29127.007.1 57447.21 2893.6 D_at 214 59.015.1-T_at ACTA2 NM_001613 10q23.3 59.015.1 29127.013.1 59.15 3872.16 215 8626.007.1-F_at TP63 NM_003722 3q28 8626.007.1 29127.019.1 8626.7 9413.6 216 5288.001.1-B_at PIK3C2G NM_004570 12p12 5288.001.1 29127.019.2 5288.1 72.5 217 72.001.1-B_at ACTG2 NM_001615 2p13.1 72.001.1 29127.022.1 72.1 27122.18 218 3866.006.2-D_at KRT15 NM_002275 17q21.2 3866.006.2 2938.001.1 3866.6 7153.5 219 3852.004.1-T_at KRT5 NM_000424 12q12-q13 3852.004.1 2982.002.1 3852.4 7018.26 220 4629.016.1-F_at MYH11 NM_001040133 16p13.11 4629.016.1 2982.012.1 4629.16 7402.14 221 4629.007.1-T_at MYH11 NM_001040134 16p13.11 4629.007.1 2982.013.2 4629.7 140446.4 222 65983.008.1- GRAMD3 NM_023927 5q23.2 65983.008.1 2982.014.1 65983.8 59.38 T_at 223 65983.013.1- GRAMD3 NM_023927 5q23.2 65983.013.1 2982.015.1 65983.13 4240.9 F_at 224 3084.004.1-F_at NRG1 NM_004501 8p12 3084.004.1 2995.001.1 3084.4 57447.8 225 27122.007.1- DKK3 NM_001018059 11p15.2 27122.007.1 29997.008.1 27122.7 2582.7 F_at 226 3866.008.1-D_at KRT15 NM_002275 17q21.2 3866.008.1 29997.012.1 3866.8 4638.9 227 26289.009.1- AK5 NM_012111 1p31 26289.009.1 29997.016.1 26289.9 3861.23 T_at 228 59.009.1-B_at ACTA2 NM_001613 10q23.3 59.009.1 301.004.1 59.9 5858.3 229 4629.010.1-D_at MYH11 NM_001040135 16p13.11 4629.010.1 301.005.1 4629.10 147495.5 230 59.023.1-B_at ACTA2 NM_001613 10q23.3 59.023.1 301.008.1 59.23 4915.4 231 26289.002.1- AK5 NM_012112 1p31 26289.002.1 301.013.1 26289.2 8626.2 F_at 232 1908.001.1-T_at EDN3 NM_001730 20q13.2-q13.3 1908.001.1 301.015.1 1908.1 59.42 233 4915.008.1-F_at NTRK2 NM_001007101 9q22.1 4915.008.1 3084.002.1 4915.8 4833.4 234 23336.002.1- DMN NM_015292 15q26.3 23336.002.1 3084.004.1 23336.2 2568.6 T_at 235 3861.008.1-C_at KRT14 NM_000526 17q12-q21 3861.008.1 3084.004.2 3861.8 57447.4 236 3861.008.1-D_at KRT14 NM_000526 17q12-q21 3861.008.1 3084.005.1 3861.8 27122.17 237 57447.035.1- NDRG2 NM_016256 14q11.2 57447.035.1 3084.006.1 57447.35 59.33 E_at 238 3861.018.1-C_at KRT14 NM_000526 17q12-q21 3861.018.1 3084.007.1 3861.18 27122.2 239 1308.003.1-B_at COL17A1 NM_000501 10q24.3 1308.003.1 3084.008.1 1308.3 3880.11 240 667.022.1-B_at DST NM_001724 6p12.1 667.022.1 3084.009.1 667.22 3872.14 241 3866.011.2-T_at KRT15 NM_002275 17q21.2 3866.011.2 3084.010.1 3866.11 162605.1 242 2115.001.2-F_at ETV1 NM_004956 7p21.3 2115.001.2 3084.011.1 2115.1 5858.1 243 3866.011.2-B_at KRT15 NM_002275 17q21.2 3866.011.2 3084.012.1 3866.11 65983.10 244 26289.010.1- AK5 NM_012113 1p31 26289.010.1 3084.012.2 26289.10 8404.5 T_at 245 27303.004.1- RBMS3 NM_001003792 3p24-p23 27303.004.1 3084.012.3 27303.4 2487.1 E_at 246 59.003.1-B_at ACTA2 NM_001613 10q23.3 59.003.1 3178.003.1 59.3 147495.9 247 4311.009.1-C_at MME NM_000905 3q25.1-q25.2 4311.009.1 3204.001.1 4311.9 65983.3 248 7373.003.6-B_at COL14A1 NM_021110 8q23 7373.003.6 338707.006.1 7373.3 1717.9 249 65983.004.1- GRAMD3 NM_023927 5q23.2 65983.004.1 339965.001.2 65983.4 140885.11 T_at 250 26289.013.1- AK5 NM_012114 1p31 26289.013.1 3426.001.1 26289.13 3832.2 D_at 251 3866.004.1-F_at KRT15 NM_002275 17q21.2 3866.004.1 3426.002.1 3866.4 3880.5 252 56477.001.1- CCL28 NM_148672 5p12 56477.001.1 3426.002.2 56477.1 6595.12 F_at 253 57447.037.1- NDRG2 NM_016257 14q11.2 57447.037.1 3459.005.1 57447.37 9768.5 F_at 254 59.022.2-T_at ACTA2 NM_001613 10q23.3 59.022.2 3479.003.1 59.22 285203.1 255 147495.008.1-F APCDD1 NM_153000 18p11.22 147495.008.1 358.012.1 147495.8 147495.6 256 2.018.1-T_at A2M NM_000014 12p13.3-p12.3 2.018.1 358.018.1 2.18 1959.2 257 140807.003.1-E KRT72 NM_080747 12q13.13 140807.003.1 3815.001.1 140807.3 7018.14 258 65983.009.1- GRAMD3 NM_023927 5q23.2 65983.009.1 3815.002.1 65983.9 5858.4 T_at 259 84668.002.1- FAM126A NM_032581 7p15.3 84668.002.1 3815.002.2 84668.2 8404.8 F_at 260 3872.007.1-C_at KRT17 NM_000422 17q12-q21 3872.007.1 3815.002.3 3872.7 4240.11 261 2115.008.1-T_at ETV1 NM_004956 7p21.3 2115.008.1 3815.002.4 2115.8 94274.2 262 65983.004.2- GRAMD3 NM_023927 5q23.2 65983.004.2 3832.002.1 65983.4 4638.15 T_at 263 57447.034.1- NDRG2 NM_016258 14q11.2 57447.034.1 3852.004.1 57447.34 57447.43 D_at 264 3866.001.1-F_at KRT15 NM_002275 17q21.2 3866.001.1 3852.005.1 3866.1 59.39 265 3866.008.1-T_at KRT15 NM_002275 17q21.2 3866.008.1 3852.006.1 3866.8 25802.3 266 1959.003.1-C_at EGR2 NM_000399 10q21.1 1959.003.1 3852.008.1 1959.3 57447.17 267 389432.002.1-T SAMD5 NM_001030060 6q24.3 389432.002.1 3852.008.2 389432.2 7018.28 268 389734.001.1-T 389734.001.1 3852.009.1 389734.1 57447.12 269 3855.001.2-D_at KRT7 NM_005556 12q12-q13 3855.001.2 3852.012.2 3855.1 57447.6 270 3866.003.1-T_at KRT15 NM_002275 17q21.2 3866.003.1 3852.013.1 3866.3 9493.6 271 3084.006.1-F_at NRG1 NM_004502 8p12 3084.006.1 3852.014.1 3084.6 9493.4 272 4915.008.1-B_at NTRK2 NM_001007102 9q22.1 4915.008.1 3852.017.1 4915.8 7169.15 273 2115.011.1-T_at ETV1 NM_004956 7p21.3 2115.011.1 3852.020.1 2115.11 57451.1 274 65983.005.1- GRAMD3 NM_023927 5q23.2 65983.005.1 3852.021.1 65983.5 8404.4 T_at 275 84668.004.1- FAM126A NM_032581 7p15.3 84668.004.1 3852.022.1 84668.4 3855.4 T_at 276 59.015.2-T_at ACTA2 NM_001613 10q23.3 59.015.2 3852.023.1 59.15 9452.1 277 2119.006.1-B_at ETV5 NM_004454 3q28 2119.006.1 3855.001.2 2119.6 57447.40 278 4638.006.2-F_at MYLK NM_005968 3q21 4638.006.2 3855.004.2 4638.6 3426.1 279 3866.007.2-D_at KRT15 NM_002275 17q21.2 3866.007.2 3860.007.1 3866.7 10253.1 280 59.014.1-T_at ACTA2 NM_001613 10q23.3 59.014.1 3860.008.1 59.14 9073.1 281 3866.001.2-F_at KRT15 NM_002275 17q21.2 3866.001.2 3861.001.1 3866.1 51201.5 282 1308.008.1-B_at COL17A1 NM_000502 10q24.3 1308.008.1 3861.007.1 1308.8 9477.6 283 59.026.1-F_at ACTA2 NM_001613 10q23.3 59.026.1 3861.008.1 59.26 57447.28 284 3866.013.1-T_at KRT15 NM_002275 17q21.2 3866.013.1 3861.013.1 3866.13 25925.7 285 1264.007.1-F_at CNN1 NM_001299 19p13.2-p13.1 1264.007.1 3861.018.1 1264.7 4281.8 286 3866.007.2-T_at KRT15 NM_002275 17q21.2 3866.007.2 3861.019.1 3866.7 90231.1 287 27122.013.1- DKK3 NM_001018060 11p15.2 27122.013.1 3861.020.1 27122.13 358.12 T_at 288 27122.006.2- DKK3 NM_001018061 11p15.2 27122.006.2 3861.022.1 27122.6 3852.21 T_at 289 3866.006.2-T_at KRT15 NM_002275 17q21.2 3866.006.2 3861.023.1 3866.6 57447.48 290 3866.009.2-T_at KRT15 NM_002275 17q21.2 3866.009.2 3866.001.1 3866.9 7018.25 291 4240.004.1-D_at MFGE8 NM_005928 15q25 4240.004.1 3866.001.2 4240.4 5608.4 292 3866.010.1-C_at KRT15 NM_002275 17q21.2 3866.010.1 3866.002.1 3866.10 4306.2 293 3866.009.2-B_at KRT15 NM_002275 17q21.2 3866.009.2 3866.003.1 3866.9 4288.4 294 3866.009.1-T_at KRT15 NM_002275 17q21.2 3866.009.1 3866.003.2 3866.9 57447.2 295 4629.006.1-T_at MYH11 NM_001040136 16p13.11 4629.006.1 3866.004.1 4629.6 4281.18 296 7018.029.1-B_at TF NM_001063 3q22.1 7018.029.1 3866.005.1 7018.29 10144.20 297 1410.002.2-B_at CRYAB NM_001885 11q22.3-q23.1 1410.002.2 3866.006.1 1410.2 6876.16 298 3866.012.1-T_at KRT15 NM_002275 17q21.2 3866.012.1 3866.006.2 3866.12 51203.4 299 59.034.2-D_at ACTA2 NM_001613 10q23.3 59.034.2 3866.007.1 59.34 2335.28 300 27122.019.1- DKK3 NM_001018062 11p15.2 27122.019.1 3866.007.2 27122.19 81557.6 F_at 301 5156.001.1-T_at PDGFRA NM_006206 4q11-q13 5156.001.1 3866.008.1 5156.1 3866.2 302 389734.001.2-T 389734.001.2 3866.009.1 389734.1 55107.6 303 27122.014.1- DKK3 NM_001018063 11p15.2 27122.014.1 3866.009.2 27122.14 57447.9 T_at 304 57447.010.3- NDRG2 NM_016259 14q11.2 57447.010.3 3866.010.1 57447.10 2115.15 T_at 305 358.018.1-F_at AQP1 NM_198098 7p14 358.018.1 3866.011.1 358.18 8404.1 306 3866.006.1-T_at KRT15 NM_002275 17q21.2 3866.006.1 3866.011.2 3866.6 57447.24 307 7373.001.1-T_at COL14A1 NM_021110 8q23 7373.001.1 3866.012.1 7373.1 79608.2 308 26289.012.1- AK5 NM_012115 1p31 26289.012.1 3866.012.2 26289.12 8404.23 B_at 309 57447.029.1- NDRG2 NM_016260 14q11.2 57447.029.1 3866.013.1 57447.29 3426.2 T_at 310 358.018.1-B_at AQP1 NM_198098 7p14 358.018.1 3868.004.1 358.18 2335.27 311 79068.010.1- FTO NM_001080432 16q12.2 79068.010.1 3868.005.1 79068.10 11065.9 B_at 312 59.024.1-B_at ACTA2 NM_001613 10q23.3 59.024.1 3872.005.1 59.24 140885.13 313 59.004.1-B_at ACTA2 NM_001613 10q23.3 59.004.1 3872.006.1 59.4 25802.4 314 3866.011.1-T_at KRT15 NM_002275 17q21.2 3866.011.1 3872.007.1 3866.11 5156.5 315 3866.013.1-E_at KRT15 NM_002275 17q21.2 3866.013.1 3872.009.1 3866.13 25802.8 316 3866.010.1-D_at KRT15 NM_002275 17q21.2 3866.010.1 3872.010.2 3866.10 7169.22 317 59.004.1-T_at ACTA2 NM_001613 10q23.3 59.004.1 3872.014.1 59.4 23266.1 318 2115.012.1-T_at ETV1 NM_004956 7p21.3 2115.012.1 3872.016.1 2115.12 29127.19 319 2.018.1-D_at A2M NM_000014 12p13.3-p12.3 2.018.1 3872.018.1 2.18 10253.4 320 2115.007.1-T_at ETV1 NM_004956 7p21.3 2115.007.1 3880.005.1 2115.7 10124.2 321 59.040.1-T_at ACTA2 NM_001613 10q23.3 59.040.1 3880.011.1 59.40 8404.32 322 130497.001.2-T OSR1 NM_145260 2p24.1 130497.001.2 389432.002.1 130497.1 84441.2 323 140885.014.1-T SIRPA NM_001040022 20p13 140885.014.1 389734.001.1 140885.14 2.13 324 3866.005.1-F_at KRT15 NM_002275 17q21.2 3866.005.1 389734.001.2 3866.5 2.24 325 7373.003.3-F_at COL14A1 NM_021110 8q23 7373.003.3 399687.001.1 7373.3 1756.9 326 8404.028.1-F_at SPARCL1 NM_004684 4q22.1 8404.028.1 403340.001.2 8404.28 7091.14 327 3860.007.1-D_at KRT13 NM_002274 17q12-q21.2 3860.007.1 4094.001.1 3860.7 115207.2 328 4638.003.1-C_at MYLK NM_005969 3q21 4638.003.1 4094.002.1 4638.3 4281.1 329 3872.009.1-E_at KRT17 NM_000422 17q12-q21 3872.009.1 4147.004.1 3872.9 57447.44 330 59.004.2-T_at ACTA2 NM_001613 10q23.3 59.004.2 4147.005.2 59.4 8626.6 331 3872.006.1-C_at KRT17 NM_000422 17q12-q21 3872.006.1 4147.011.1 3872.6 57447.51 332 3866.005.1-C_at KRT15 NM_002275 17q21.2 3866.005.1 4147.012.1 3866.5 1063.1 333 25925.008.1- ZNF521 NM_015461 18q11.2 25925.008.1 4240.001.1 25925.8 1308.1 T_at 334 23650.011.2- TRIM29 NM_012101 11q22-q23 23650.011.2 4240.004.1 23650.11 2115.14 T_at 335 3866.012.2-T_at KRT15 NM_002275 17q21.2 3866.012.2 4240.009.1 3866.12 5284.4 336 3852.017.1-D_at KRT5 NM_000424 12q12-q13 3852.017.1 4240.011.1 3852.17 2982.2 337 4915.005.1-T_at NTRK2 NM_001007103 9q22.1 4915.005.1 4240.011.3 4915.5 57447.47 338 4638.003.1-B_at MYLK NM_005970 3q21 4638.003.1 4240.015.1 4638.3 5803.6 339 1756.003.1-B_at DMD NM_000140 Xp21.2 1756.003.1 4281.001.1 1756.3 57447.39 340 4638.006.1-F_at MYLK NM_005971 3q21 4638.006.1 4281.008.2 4638.6 6876.11 341 57447.035.1- NDRG2 NM_016261 14q11.2 57447.035.1 4281.009.1 57447.35 9768.2 F_at 342 4638.014.1-T_at MYLK NM_005972 3q21 4638.014.1 4281.010.1 4638.14 140885.10 343 7373.003.4-T_at COL14A1 NM_021110 8q23 7373.003.4 4281.012.1 7373.3 4638.20 344 27122.014.2- DKK3 NM_001018064 11p15.2 27122.014.2 4281.012.2 27122.14 7373.4 D_at 345 3866.007.1-T_at KRT15 NM_002275 17q21.2 3866.007.1 4281.014.1 3866.7 4281.15 346 2707.002.1-E_at GJB3 NM_001005752 1p34 2707.002.1 4281.015.1 2707.2 8404.13 347 59.024.1-T_at ACTA2 NM_001613 10q23.3 59.024.1 4281.018.1 59.24 90293.1 348 23650.011.1- TRIM29 NM_012101 11q22-q23 23650.011.1 4281.023.1 23650.11 2335.6 T_at 349 4638.011.1-F_at MYLK NM_005973 3q21 4638.011.1 4288.004.1 4638.11 57447.22 350 7373.002.1-F_at COL14A1 NM_021110 8q23 7373.002.1 4288.005.1 7373.2 8404.30 351 3866.013.1-F_at KRT15 NM_002275 17q21.2 3866.013.1 4288.006.1 3866.13 5803.2 352 5608.002.1-T_at MAP2K6 NM_002758 17q24.3 5608.002.1 4288.006.2 5608.2 84441.5 353 3866.001.1-C_at KRT15 NM_002275 17q21.2 3866.001.1 4288.007.1 3866.1 7091.15 354 1756.013.1-B_at DMD NM_000141 Xp21.2 1756.013.1 4288.008.1 1756.13 2119.5 355 2115.006.1-E_at ETV1 NM_004956 7p21.3 2115.006.1 4288.009.1 2115.6 79608.8 356 6376.001.2-F_at CX3CL1 NM_002996 16q13 6376.001.2 4306.002.1 6376.1 8404.22 357 3084.004.1-B_at NRG1 NM_004503 8p12 3084.004.1 4311.001.1 3084.4 8404.34 358 3815.002.4-F_at KIT NM_000235 4q11-q12 3815.002.4 4311.001.2 3815.2 57447.49 359 8404.002.1-D_at SPARCL1 NM_004684 4q22.1 8404.002.1 4311.009.1 8404.2 5311.2 360 1264.006.1-T_at CNN1 NM_001299 19p13.2-p13.1 1264.006.1 440421.001.1 1264.6 2335.25 361 59.022.2-D_at ACTA2 NM_001613 10q23.3 59.022.2 4601.014.1 59.22 4147.12 362 25925.001.1- ZNF521 NM_015461 18q11.2 25925.001.1 4629.005.1 25925.1 301.15 T_at 363 4638.006.2-B_at MYLK NM_005974 3q21 4638.006.2 4629.006.1 4638.6 301.4 364 7373.003.5-B_at COL14A1 NM_021110 8q23 7373.003.5 4629.006.2 7373.3 7091.1 365 8404.035.1-B_at SPARCL1 NM_004684 4q22.1 8404.035.1 4629.007.1 8404.35 8404.21 366 59.012.1-T_at ACTA2 NM_001613 10q23.3 59.012.1 4629.010.1 59.12 53335.2 367 3852.017.1-T_at KRT5 NM_000424 12q12-q13 3852.017.1 4629.015.1 3852.17 5284.3 368 3866.012.2-B_at KRT15 NM_002275 17q21.2 3866.012.2 4629.016.1 3866.12 23650.20 369 2.022.1-B_at A2M NM_000014 12p13.3-p12.3 2.022.1 4629.020.1 2.22 57447.42 370 27122.016.1- DKK3 NM_001018065 11p15.2 27122.016.1 4629.021.1 27122.16 6876.23 F_at 371 4311.009.1-B_at MME NM_000906 3q25.1-q25.2 4311.009.1 4629.022.1 4311.9 6876.2 372 59.031.2-T_at ACTA2 NM_001613 10q23.3 59.031.2 4638.003.1 59.31 65983.7 373 4311.009.1-T_at MME NM_000907 3q25.1-q25.2 4311.009.1 4638.006.1 4311.9 152015.4 374 3866.006.2-B_at KRT15 NM_002275 17q21.2 3866.006.2 4638.006.2 3866.6 6285.1 375 57447.025.2- NDRG2 NM_016262 14q11.2 57447.025.2 4638.009.1 57447.25 6289.5 T_at 376 1717.007.1-F_at DHCR7 NM_001360 11q13.2-q13.5 1717.007.1 4638.011.1 1717.7 9232.2 377 59.004.2-D_at ACTA2 NM_001613 10q23.3 59.004.2 4638.014.1 59.4 3084.11 378 3866.007.2-B_at KRT15 NM_002275 17q21.2 3866.007.2 4638.015.1 3866.7 3872.5 379 3866.010.1-F_at KRT15 NM_002275 17q21.2 3866.010.1 4638.020.1 3866.10 81704.8 380 9768.004.1-D_at KIAA0101 NM_001029989 15q22.31 9768.004.1 4744.004.1 9768.4 338707.6 381 3084.012.2-T_at NRG1 NM_004504 8p12 3084.012.2 4751.002.1 3084.12 23266.8 382 1410.004.2-B_at CRYAB NM_001885 11q22.3-q23.1 1410.004.2 4781.002.2 1410.4 120.5 383 59.008.1-D_at ACTA2 NM_001613 10q23.3 59.008.1 4781.006.2 59.8 4281.9 384 57447.030.1- NDRG2 NM_016263 14q11.2 57447.030.1 4781.007.1 57447.30 4094.1 C_at 385 2327.002.1-D_at FMO2 NM_001460 1q23-q25 2327.002.1 4781.014.2 2327.2 2995.1 386 1308.004.1-B_at COL17A1 NM_000503 10q24.3 1308.004.1 4781.015.2 1308.4 2335.17 387 2568.005.2-B_at GABRP NM_014211 5q33-q34 2568.005.2 4781.016.1 2568.5 5284.1 388 2568.001.1-T_at GABRP NM_014211 5q33-q34 2568.001.1 4833.004.1 2568.1 8404.26 389 3084.004.2-T_at NRG1 NM_004505 8p12 3084.004.2 4833.010.1 3084.4 2335.9 390 7373.003.4-B_at COL14A1 NM_021110 8q23 7373.003.4 4915.004.1 7373.3 10461.2 391 7153.002.2-D_at TOP2A NM_001067 17q21-q22 7153.002.2 4915.005.1 7153.2 7091.10 392 2893.006.2-T_at GRIA4 NM_000829 11q22 2893.006.2 4915.008.1 2893.6 79895.1 393 3872.016.1-D_at KRT17 NM_000422 17q12-q21 3872.016.1 4915.011.1 3872.16 57447.38 394 9413.006.1-F_at C9orf61 NM_004816 9q13-q21 9413.006.1 4915.012.1 9413.6 7373.8 395 59.023.2-B_at ACTA2 NM_001613 10q23.3 59.023.2 501.006.1 59.23 4744.4 396 72.005.1-B_at ACTG2 NM_001615 2p13.1 72.005.1 51062.008.1 72.5 8404.15 397 4915.011.1-C_at NTRK2 NM_001007104 9q22.1 4915.011.1 51201.005.1 4915.11 4281.14 398 27122.018.1- DKK3 NM_001018066 11p15.2 27122.018.1 51201.007.1 27122.18 4288.6 F_at 399 3852.006.1-B_at KRT5 NM_000424 12q12-q13 3852.006.1 51203.002.2 3852.6 25925.9 400 4638.006.2-D_at MYLK NM_005975 3q21 4638.006.2 51203.003.1 4638.6 667.10 401 7153.005.1-E_at TOP2A NM_001067 17q21-q22 7153.005.1 51203.004.1 7153.5 57447.11 402 7373.001.2-T_at COL14A1 NM_021110 8q23 7373.001.2 51203.009.1 7373.1 8404.24 403 7018.026.1-B_at TF NM_001063 3q22.1 7018.026.1 5137.004.2 7018.26 57447.32 404 7402.014.1-B_at UTRN NM_007124 6q24 7402.014.1 5156.001.1 7402.14 51062.8 405 57447.010.3- NDRG2 NM_016264 14q11.2 57447.010.3 5156.005.1 57447.10 2335.13 D_at 406 140446.004.1-T 140446.004.1 5213.024.1 140446.4 7170.5 407 59.026.2-T_at ACTA2 NM_001613 10q23.3 59.026.2 5284.001.1 59.26 2568.3 408 59.038.1-B_at ACTA2 NM_001613 10q23.3 59.038.1 5284.003.1 59.38 9898.15 409 4240.009.1-C_at MFGE8 NM_005928 15q25 4240.009.1 5284.003.2 4240.9 7018.13 410 57447.030.1- NDRG2 NM_016265 14q11.2 57447.030.1 5284.004.1 57447.30 7170.34 F_at 411 9768.004.1-B_at KIAA0101 NM_001029990 15q22.31 9768.004.1 5288.001.1 9768.4 2.2 412 57447.008.1- NDRG2 NM_016266 14q11.2 57447.008.1 5288.001.2 57447.8 57447.50 T_at 413 59.014.2-T_at ACTA2 NM_001613 10q23.3 59.014.2 5288.001.3 59.14 2335.32 414 4915.012.1-T_at NTRK2 NM_001007105 9q22.1 4915.012.1 5288.003.1 4915.12 51203.3 415 3866.004.1-T_at KRT15 NM_002275 17q21.2 3866.004.1 5311.002.1 3866.4 9493.1 416 2582.007.2-C_at GALE NM_000403 1p36-p35 2582.007.2 5311.003.1 2582.7 80034.3 417 7153.002.5-T_at TOP2A NM_001067 17q21-q22 7153.002.5 53335.002.1 7153.2 7170.16 418 4638.009.1-T_at MYLK NM_005976 3q21 4638.009.1 53829.001.2 4638.9 57447.26 419 3861.023.1-T_at KRT14 NM_000526 17q12-q21 3861.023.1 54443.006.2 3861.23 301.8 420 5858.003.3-C_at PZP NM_002864 12p13-p12.2 5858.003.3 54443.011.1 5858.3 80034.2 421 3861.020.1-F_at KRT14 NM_000526 17q12-q21 3861.020.1 54443.012.1 3861.20 3852.23 422 147495.005.1-T APCDD1 NM_153000 18p11.22 147495.005.1 54443.013.1 147495.5 10124.3 423 4638.006.2-C_at MYLK NM_005977 3q21 4638.006.2 54829.001.1 4638.6 23650.19 424 1308.004.1-F_at COL17A1 NM_000504 10q24.3 1308.004.1 54928.003.1 1308.4 7170.27 425 4915.004.1-F_at NTRK2 NM_001007106 9q22.1 4915.004.1 54997.002.2 4915.4 54928.3 426 3866.008.1-B_at KRT15 NM_002275 17q21.2 3866.008.1 55107.006.2 3866.8 3084.10 427 8626.002.1-E_at TP63 NM_003722 3q28 8626.002.1 55366.001.1 8626.2 2115.3 428 1264.003.1-T_at CNN1 NM_001299 19p13.2-p13.1 1264.003.1 55366.001.2 1264.3 8404.9 429 59.042.1-F_at ACTA2 NM_001613 10q23.3 59.042.1 55656.007.3 59.42 6289.3 430 4833.004.1-C_at NME4 NM_005009 16p13.3 4833.004.1 55732.003.2 4833.4 7170.25 431 2568.006.1-B_at GABRP NM_014211 5q33-q34 2568.006.1 5608.002.1 2568.6 22974.7 432 57447.004.2- NDRG2 NM_016267 14q11.2 57447.004.2 5608.004.1 57447.4 4147.11 T_at 433 59.014.2-B_at ACTA2 NM_001613 10q23.3 59.014.2 5621.002.2 59.14 23650.3 434 3084.012.1-T_at NRG1 NM_004506 8p12 3084.012.1 5621.008.1 3084.12 64168.10 435 27122.017.1- DKK3 NM_001018067 11p15.2 27122.017.1 5627.002.1 27122.17 25925.11 T_at 436 3852.012.2-T_at KRT5 NM_000424 12q12-q13 3852.012.2 56477.001.1 3852.12 9232.4 437 59.033.1-T_at ACTA2 NM_001613 10q23.3 59.033.1 57162.010.1 59.33 4147.5 438 27122.002.1- DKK3 NM_001018068 11p15.2 27122.002.1 57447.002.1 27122.2 147804.4 C_at 439 3880.011.1-B_at KRT19 NM_002276 17q21.2 3880.011.1 57447.004.1 3880.11 81704.13 440 65983.013.1- GRAMD3 NM_023927 5q23.2 65983.013.1 57447.004.2 65983.13 54443.13 T_at 441 3872.014.1-T_at KRT17 NM_000422 17q12-q21 3872.014.1 57447.006.1 3872.14 1410.5 442 162605.001.4-C KRT28 NM_181535 17q21.2 162605.001.4 57447.008.1 162605.1 3204.1 443 59.031.2-B_at ACTA2 NM_001613 10q23.3 59.031.2 57447.008.2 59.31 29997.12 444 3084.012.2-B_at NRG1 NM_004507 8p12 3084.012.2 57447.009.1 3084.12 2.5 445 5858.001.2-C_at PZP NM_002864 12p13-p12.2 5858.001.2 57447.010.1 5858.1 1063.2 446 65983.010.1- GRAMD3 NM_023927 5q23.2 65983.010.1 57447.010.2 65983.10 10144.21 T_at 447 7373.003.5-F_at COL14A1 NM_021110 8q23 7373.003.5 57447.010.3 7373.3 8404.25 448 3866.010.1-T_at KRT15 NM_002275 17q21.2 3866.010.1 57447.011.1 3866.10 6876.20 449 8404.005.1-B_at SPARCL1 NM_004684 4q22.1 8404.005.1 57447.012.1 8404.5 7170.6 450 3866.005.1-T_at KRT15 NM_002275 17q21.2 3866.005.1 57447.012.2 3866.5 10051.16 451 59.003.1-F_at ACTA2 NM_001613 10q23.3 59.003.1 57447.017.1 59.3 5627.2 452 7153.002.5-F_at TOP2A NM_001067 17q21-q22 7153.002.5 57447.021.1 7153.2 399687.1 453 2487.001.1-T_at FRZB NM_001463 2qter 2487.001.1 57447.022.1 2487.1 54997.2 454 3866.010.1-B_at KRT15 NM_002275 17q21.2 3866.010.1 57447.024.1 3866.10 57561.1 455 147495.009.1-T APCDD1 NM_153000 18p11.22 147495.009.1 57447.025.1 147495.9 8404.31 456 65983.003.2- GRAMD3 NM_023927 5q23.2 65983.003.2 57447.025.2 65983.3 2.25 T_at 457 59.040.1-D_at ACTA2 NM_001613 10q23.3 59.040.1 57447.026.1 59.40 699.2 458 59.024.2-T_at ACTA2 NM_001613 10q23.3 59.024.2 57447.027.1 59.24 9055.13 459 1717.009.2-B_at DHCR7 NM_001360 11q13.2-q13.5 1717.009.2 57447.028.1 1717.9 10051.5 460 1756.027.1-F_at DMD NM_000142 Xp21.2 1756.027.1 57447.029.1 1756.27 2568.2 461 59.042.1-B_at ACTA2 NM_001613 10q23.3 59.042.1 57447.030.1 59.42 4147.4 462 7153.002.5-D_at TOP2A NM_001067 17q21-q22 7153.002.5 57447.031.1 7153.2 2938.1 463 57447.031.1- NDRG2 NM_016268 14q11.2 57447.031.1 57447.032.1 57447.31 2982.12 F_at 464 140885.011.1-C SIRPA NM_001040023 20p13 140885.011.1 57447.033.1 140885.11 2893.2 465 59.003.1-T_at ACTA2 NM_001613 10q23.3 59.003.1 57447.034.1 59.3 116369.6 466 3832.002.1-D_at KIF11 NM_004523 10q24.1 3832.002.1 57447.035.1 3832.2 6304.7 467 3880.005.1-D_at KRT19 NM_002276 17q21.2 3880.005.1 57447.037.1 3880.5 2335.35 468 3084.012.1-F_at NRG1 NM_004508 8p12 3084.012.1 57447.038.1 3084.12 4751.2 469 6595.012.1-B_at SMARCA2 NM_003070 9p22.3 6595.012.1 57447.039.1 6595.12 64151.1 470 59.012.2-D_at ACTA2 NM_001613 10q23.3 59.012.2 57447.040.1 59.12 29089.3 471 57447.034.1- NDRG2 NM_016269 14q11.2 57447.034.1 57447.041.1 57447.34 3860.8 C_at 472 56477.001.1- CCL28 NM_148672 5p12 56477.001.1 57447.042.1 56477.1 25925.6 B_at 473 57447.041.1- NDRG2 NM_016270 14q11.2 57447.041.1 57447.043.1 57447.41 59.49 D_at 474 9768.005.1-B_at KIAA0101 NM_001029991 15q22.31 9768.005.1 57447.044.1 9768.5 6289.2 475 285203.001.2-C C3orf64 NM_173654 3p14.1 285203.001.2 57447.047.1 285203.1 244.3 476 147495.006.1-B APCDD1 NM_153000 18p11.22 147495.006.1 57447.048.1 147495.6 11065.8 477 7018.029.1-D_at TF NM_001063 3q22.1 7018.029.1 57447.048.2 7018.29 7091.6 478 3852.009.1-T_at KRT5 NM_000424 12q12-q13 3852.009.1 57447.049.1 3852.9 79608.9 479 59.023.2-D_at ACTA2 NM_001613 10q23.3 59.023.2 57447.050.1 59.23 9413.2 480 1959.002.1-D_at EGR2 NM_000399 10q21.1 1959.002.1 57447.051.1 1959.2 7431.64 481 7018.014.1-D_at TF NM_001063 3q22.1 7018.014.1 57447.051.2 7018.14 8404.29 482 5858.004.1-F_at PZP NM_002864 12p13-p12.2 5858.004.1 57451.001.3 5858.4 301.5 483 79192.002.2- IRX1 NM_024337 5p15.3 79192.002.2 57451.002.3 79192.2 9055.14 D_at 484 59.008.2-B_at ACTA2 NM_001613 10q23.3 59.008.2 57451.004.1 59.8 4281.23 485 8404.008.1-E_at SPARCL1 NM_004684 4q22.1 8404.008.1 57561.001.1 8404.8 1062.1 486 59.008.1-F_at ACTA2 NM_001613 10q23.3 59.008.1 57561.002.1 59.8 5858.5 487 4240.011.1-B_at MFGE8 NM_005928 15q25 4240.011.1 5764.001.1 4240.11 51201.7 488 94274.002.1- PPP1R14A NM_033256 19q13.1 94274.002.1 5803.002.1 94274.2 4240.1 C_at 489 4638.015.1-T_at MYLK NM_005978 3q21 4638.015.1 5803.002.2 4638.15 9413.1 490 6376.001.1-T_at CX3CL1 NM_002996 16q13 6376.001.1 5803.006.1 6376.1 11197.1 491 57447.043.1- NDRG2 NM_016271 14q11.2 57447.043.1 58499.005.2 57447.43 6285.2 F_at 492 59.039.1-T_at ACTA2 NM_001613 10q23.3 59.039.1 5858.001.2 59.39 7169.1 493 4638.006.1-B_at MYLK NM_005979 3q21 4638.006.1 5858.003.3 4638.6 4601.14 494 25802.003.1- LMOD1 NM_012134 1q32 25802.003.1 5858.004.1 25802.3 51203.2 F_at 495 57447.025.1- NDRG2 NM_016272 14q11.2 57447.025.1 5858.005.1 57447.25 7018.22 T_at 496 57447.017.1- NDRG2 NM_016273 14q11.2 57447.017.1 59.003.1 57447.17 4288.9 T_at 497 7018.026.1-C_at TF NM_001063 3q22.1 7018.026.1 59.004.1 7018.26 8321.4 498 7018.028.1-E_at TF NM_001063 3q22.1 7018.028.1 59.004.2 7018.28 8564.4 499 4915.008.1-C_at NTRK2 NM_001007107 9q22.1 4915.008.1 59.008.1 4915.8 29127.13 500 358.018.1-C_at AQP1 NM_198098 7p14 358.018.1 59.008.2 358.18 1058.4 501 7153.002.6-B_at TOP2A NM_001067 17q21-q22 7153.002.6 59.009.1 7153.2 2232.14 502 57447.012.1- NDRG2 NM_016274 14q11.2 57447.012.1 59.012.1 57447.12 23650.5 T_at 503 59.040.1-B_at ACTA2 NM_001613 10q23.3 59.040.1 59.012.2 59.40 5621.2 504 57447.006.1- NDRG2 NM_016275 14q11.2 57447.006.1 59.014.1 57447.6 54443.12 T_at 505 9493.006.1-F_at KIF23 NM_004856 15q23 9493.006.1 59.014.2 9493.6 3479.3 506 57447.004.1- NDRG2 NM_016276 14q11.2 57447.004.1 59.015.1 57447.4 94274.3 T_at 507 57447.004.2- NDRG2 NM_016277 14q11.2 57447.004.2 59.015.2 57447.4 84668.3 B_at 508 7373.001.2-D_at COL14A1 NM_021110 8q23 7373.001.2 59.016.1 7373.1 22974.8 509 9493.004.1-B_at KIF23 NM_004856 15q23 9493.004.1 59.022.1 9493.4 55656.7 510 2568.005.2-C_at GABRP NM_014211 5q33-q34 2568.005.2 59.022.2 2568.5 29127.2 511 7018.029.1-F_at TF NM_001063 3q22.1 7018.029.1 59.023.1 7018.29 4281.12 512 26289.013.1- AK5 NM_012116 1p31 26289.013.1 59.023.2 26289.13 79627.3 B_at 513 7169.015.1-B_at TPM2 NM_003289 9p13.2-p13.1 7169.015.1 59.024.1 7169.15 2982.14 514 57451.001.3- ODZ2 NM_001080428 5q34-q35.1 57451.001.3 59.024.2 57451.1 2335.53 F_at 515 2568.005.2-F_at GABRP NM_014211 5q33-q34 2568.005.2 59.026.1 2568.5 667.1 516 57447.004.2- NDRG2 NM_016278 14q11.2 57447.004.2 59.026.2 57447.4 55366.1 F_at 517 8404.004.1-D_at SPARCL1 NM_004684 4q22.1 8404.004.1 59.029.1 8404.4 5311.3 518 3855.004.2-D_at KRT7 NM_005556 12q12-q13 3855.004.2 59.031.1 3855.4 6304.11 519 3872.014.1-F_at KRT17 NM_000422 17q12-q21 3872.014.1 59.031.2 3872.14 7373.7 520 57447.033.1- NDRG2 NM_016279 14q11.2 57447.033.1 59.033.1 57447.33 1410.9 F_at 521 9452.001.1-T_at ITM2A NM_004867 Xq13.3-Xq21.2 9452.001.1 59.033.2 9452.1 79745.4 522 59.033.2-T_at ACTA2 NM_001613 10q23.3 59.033.2 59.034.1 59.33 24137.4 523 3084.009.1-T_at NRG1 NM_004509 8p12 3084.009.1 59.034.2 3084.9 6241.13 524 57447.040.1- NDRG2 NM_016280 14q11.2 57447.040.1 59.038.1 57447.40 1410.1 T_at 525 4833.004.1-T_at NME4 NM_005009 16p13.3 4833.004.1 59.039.1 4833.4 4781.15 526 3426.001.1-F_at CFI NM_000204 4q25 3426.001.1 59.040.1 3426.1 72.2 527 59.034.1-B_at ACTA2 NM_001613 10q23.3 59.034.1 59.042.1 59.34 2982.13 528 10253.001.1- SPRY2 NM_005842 13q31.1 10253.001.1 59.049.1 10253.1 79971.12 E_at 529 9073.001.1-C_at CLDN8 NM_199328 21q22.11 9073.001.1 6122.037.1 9073.1 7169.4 530 51201.005.1- ZDHHC2 NM_016353 8p21.3-p22 51201.005.1 6122.046.1 51201.5 2335.16 T_at 531 9477.006.1-C_at MED20 NM_004275 6p21.1 9477.006.1 6241.013.1 9477.6 259266.3 532 57447.028.1- NDRG2 NM_016281 14q11.2 57447.028.1 6285.001.1 57447.28 9055.20 T_at 533 25925.007.1- ZNF521 NM_015461 18q11.2 25925.007.1 6285.002.1 25925.7 7091.16 T_at 534 59.024.2-B_at ACTA2 NM_001613 10q23.3 59.024.2 6285.003.1 59.24 57162.10 535 2.022.1-T_at A2M NM_000014 12p13.3-p12.3 2.022.1 6286.001.1 2.22 4781.2 536 4281.008.2-B_at MID1 NM_000382 Xp22 4281.008.2 6288.001.1 4281.8 6122.37 537 90231.001.1- KIAA2013 NM_138346 1p36.22 90231.001.1 6288.004.1 90231.1 4240.15 C_at 538 358.012.1-D_at AQP1 NM_198098 7p14 358.012.1 6289.001.1 358.12 6304.2 539 3852.021.1-T_at KRT5 NM_000424 12q12-q13 3852.021.1 6289.001.2 3852.21 301.13 540 7373.003.4-D_at COL14A1 NM_021110 8q23 7373.003.4 6289.002.1 7373.3 6304.12 541 57447.048.1- NDRG2 NM_016282 14q11.2 57447.048.1 6289.002.2 57447.48 11065.5 T_at 542 358.012.1-B_at AQP1 NM_198098 7p14 358.012.1 6289.003.1 358.12 29997.16 543 7018.025.1-C_at TF NM_001063 3q22.1 7018.025.1 6289.003.2 7018.25 1410.11 544 5608.004.1-T_at MAP2K6 NM_002758 17q24.3 5608.004.1 6289.005.1 5608.4 7170.40 545 3084.012.2-F_at NRG1 NM_004510 8p12 3084.012.2 6289.006.1 3084.12 7170.41 546 4306.002.1-C_at NR3C2 NM_000901 4q31.1 4306.002.1 6304.002.1 4306.2 4094.2 547 4288.004.1-D_at MKI67 NM_002417 10q25-qter 4288.004.1 6304.006.2 4288.4 7113.11 548 57447.002.1- NDRG2 NM_016283 14q11.2 57447.002.1 6304.007.1 57447.2 7170.2 F_at 549 4281.018.1-T_at MID1 NM_000383 Xp22 4281.018.1 6304.007.2 4281.18 8404.17 550 10144.020.2- FAM13A1 NM_001015045 4q22.1 10144.020.2 6304.011.1 10144.20 59.29 B_at 551 6876.016.1-E_at TAGLN NM_001001522 11q23.2 6876.016.1 6304.012.1 6876.16 29089.1 552 57447.008.2- NDRG2 NM_016284 14q11.2 57447.008.2 6376.001.1 57447.8 9134.1 T_at 553 51203.004.1- NUSAP1 NM_016359 15q15.1 51203.004.1 6376.001.2 51203.4 1410.10 T_at 554 2335.028.1-B_at FN1 NM_002026 2q34 2335.028.1 64151.001.2 2335.28 2327.3 555 7018.028.1-F_at TF NM_001063 3q22.1 7018.028.1 64168.010.1 7018.28 6289.1 556 7373.003.5-T_at COL14A1 NM_021110 8q23 7373.003.5 6422.001.1 7373.3 1410.6 557 81557.006.1- MAGED4B NM_030801 — 81557.006.1 6422.002.1 81557.6 80034.4 C_at 558 3866.002.1-D_at KRT15 NM_002275 17q21.2 3866.002.1 6441.004.1 3866.2 1410.8 559 3866.001.1-B_at KRT15 NM_002275 17q21.2 3866.001.1 6595.012.1 3866.1 6288.1 560 55107.006.2- TMEM16A NM_018043 11q13.3 55107.006.2 65983.003.1 55107.6 8404.20 T_at 561 79068.010.1- FTO NM_001080432 16q12.2 79068.010.1 65983.003.2 79068.10 3459.5 D_at 562 57447.009.1- NDRG2 NM_016285 14q11.2 57447.009.1 65983.004.1 57447.9 83539.1 T_at 563 2115.015.1-T_at ETV1 NM_004956 7p21.3 2115.015.1 65983.004.2 2115.15 6288.4 564 1756.013.1-C_at DMD NM_000143 Xp21.2 1756.013.1 65983.005.1 1756.13 4781.16 565 7169.015.1-F_at TPM2 NM_003290 9p13.2-p13.1 7169.015.1 65983.007.1 7169.15 53829.1 566 65983.013.2- GRAMD3 NM_023927 5q23.2 65983.013.2 65983.008.1 65983.13 10051.8 F_at 567 8404.001.1-B_at SPARCL1 NM_004684 4q22.1 8404.001.1 65983.009.1 8404.1 1033.2 568 4240.004.1-B_at MFGE8 NM_005928 15q25 4240.004.1 65983.010.1 4240.4 2335.5 569 57447.012.2- NDRG2 NM_016286 14q11.2 57447.012.2 65983.013.1 57447.12 7113.9 T_at 570 57447.024.1- NDRG2 NM_016287 14q11.2 57447.024.1 65983.013.2 57447.24 7168.3 F_at 571 358.018.1-T_at AQP1 NM_198098 7p14 358.018.1 667.001.1 358.18 79608.1 572 57447.048.2- NDRG2 NM_016288 14q11.2 57447.048.2 667.010.1 57447.48 7113.10 T_at 573 59.031.1-C_at ACTA2 NM_001613 10q23.3 59.031.1 667.021.1 59.31 4781.14 574 3860.007.1-F_at KRT13 NM_002275 17q12-q21.2 3860.007.1 667.022.1 3860.7 11065.3 575 8404.028.1-C_at SPARCL1 NM_004684 4q22.1 8404.028.1 6876.002.1 8404.28 3084.5 576 4240.011.3-E_at MFGE8 NM_005928 15q25 4240.011.3 6876.011.1 4240.11 6285.3 577 59.022.2-B_at ACTA2 NM_001613 10q23.3 59.022.2 6876.016.1 59.22 54829.1 578 3866.002.1-F_at KRT15 NM_002275 17q21.2 3866.002.1 6876.016.2 3866.2 9055.11 579 3866.002.1-T_at KRT15 NM_002275 17q21.2 3866.002.1 6876.020.1 3866.2 4288.8 580 4915.005.1-B_at NTRK2 NM_001007108 9q22.1 4915.005.1 6876.023.1 4915.5 4781.7 581 8404.008.1-F_at SPARCL1 NM_004684 4q22.1 8404.008.1 699.002.1 8404.8 9055.17 582 79608.002.1- RIC3 NM_024557 11p15.4 79608.002.1 7018.013.1 79608.2 7170.18 F_at 583 8404.023.1-D_at SPARCL1 NM_004684 4q22.1 8404.023.1 7018.014.1 8404.23 10253.3 584 3426.002.1-D_at CFI NM_000204 4q25 3426.002.1 7018.022.1 3426.2 2982.15 585 2335.027.1-T_at FN1 NM_002027 2q34 2335.027.1 7018.025.1 2335.27 10124.4 586 11065.009.1- UBE2C NM_007019 20q13.12 11065.009.1 7018.026.1 11065.9 7091.5 T_at 587 140885.013.1-F SIRPA NM_001040024 20p13 140885.013.1 7018.028.1 140885.13 501.6 588 57447.021.1- NDRG2 NM_016289 14q11.2 57447.021.1 7018.029.1 57447.21 244.12 B_at 589 25802.004.1- LMOD1 NM_012134 1q32 25802.004.1 7091.001.1 25802.4 3872.18 C_at 590 4638.014.1-F_at MYLK NM_005980 3q21 4638.014.1 7091.005.1 4638.14 10144.17 591 9493.004.1-F_at KIF23 NM_004856 15q23 9493.004.1 7091.006.1 9493.4 29127.7 592 8404.004.1-B_at SPARCL1 NM_004684 4q22.1 8404.004.1 7091.010.1 8404.4 10010.4 593 8404.004.2-T_at SPARCL1 NM_004684 4q22.1 8404.004.2 7091.014.1 8404.4 4781.6 594 57447.010.2- NDRG2 NM_016290 14q11.2 57447.010.2 7091.015.1 57447.10 23092.4 T_at 595 57447.010.3- NDRG2 NM_016291 14q11.2 57447.010.3 7091.016.1 57447.10 2335.2 B_at 596 27122.006.1- DKK3 NM_001018069 11p15.2 27122.006.1 7113.001.1 27122.6 6304.6 T_at 597 5156.005.1-T_at PDGFRA NM_006206 4q11-q13 5156.005.1 7113.009.1 5156.5 9055.19 598 5858.004.1-E_at PZP NM_002864 12p13-p12.2 5858.004.1 7113.010.1 5858.4 1398.1 599 25802.008.1- LMOD1 NM_012134 1q32 25802.008.1 7113.011.1 25802.8 339965.1 D_at 600 2327.002.2-T_at FMO2 NM_001460 1q23-q25 2327.002.2 7153.002.2 2327.2 7113.1 601 3852.004.1-C_at KRT5 NM_000424 12q12-q13 3852.004.1 7153.002.3 3852.4 4833.10 602 59.026.2-F_at ACTA2 NM_001613 10q23.3 59.026.2 7153.002.4 59.26 79971.13 603 57447.029.1- NDRG2 NM_016292 14q11.2 57447.029.1 7153.002.5 57447.29 152015.5 C_at 604 7169.022.1-D_at TPM2 NM_003291 9p13.2-p13.1 7169.022.1 7153.002.6 7169.22 4288.5 605 23266.001.3- LPHN2 NM_012302 1p31.1 23266.001.3 7153.005.1 23266.1 6441.4 B_at 606 3084.012.1-B_at NRG1 NM_004511 8p12 3084.012.1 7168.003.1 3084.12 6122.46 607 29127.019.2- RACGAP1 NM_013277 12q13.13 29127.019.2 7169.001.1 29127.19 115908.2 T_at 608 10253.004.1- SPRY2 NM_005842 13q31.1 10253.004.1 7169.004.1 10253.4 9481.1 T_at 609 10124.002.1- ARL4A NM_001037164 7p21-p15.3 10124.002.1 7169.015.1 10124.2 2335.24 D_at 610 3861.013.1-D_at KRT14 NM_000526 17q12-q21 3861.013.1 7169.022.1 3861.13 891.7 611 8404.032.1-T_at SPARCL1 NM_004684 4q22.1 8404.032.1 7170.002.1 8404.32 57451.4 612 84441.002.1- MAML2 NM_032427 11q21 84441.002.1 7170.005.2 84441.2 6286.1 E_at 613 2.013.1-E_at A2M NM_000014 12p13.3-p12.3 2.013.1 7170.006.1 2.13 10580.12 614 3084.004.1-T_at NRG1 NM_004512 8p12 3084.004.1 7170.007.1 3084.4 23321.14 615 5288.001.2-F_at PIK3C2G NM_004570 12p12 5288.001.2 7170.014.1 5288.1 2824.1 616 57447.017.1- NDRG2 NM_016293 14q11.2 57447.017.1 7170.016.3 57447.17 29127.22 F_at 617 3084.006.1-T_at NRG1 NM_004513 8p12 3084.006.1 7170.018.2 3084.6 54443.11 618 59.039.1-F_at ACTA2 NM_001613 10q23.3 59.039.1 7170.025.1 59.39 29997.8 619 2.024.1-T_at A2M NM_000014 12p13.3-p12.3 2.024.1 7170.027.1 2.24 57561.2 620 3815.002.2-E_at KIT NM_000236 4q11-q12 3815.002.2 7170.034.2 3815.2 57451.2 621 1756.009.1-D_at DMD NM_000144 Xp21.2 1756.009.1 7170.040.1 1756.9 5213.24 622 7091.014.1-B_at TLE4 NM_007005 9q21.31 7091.014.1 7170.041.1 7091.14 11065.4 623 4629.015.1-F_at MYH11 NM_001040137 16p13.11 4629.015.1 72.001.1 4629.15 6289.6 624 59.008.2-F_at ACTA2 NM_001613 10q23.3 59.008.2 72.002.1 59.8 23284.7 625 2568.005.2-T_at GABRP NM_014211 5q33-q34 2568.005.2 72.005.1 2568.5 79971.9 626 115207.002.1-T KCTD12 NM_138444 13q22.3 115207.002.1 7373.001.1 115207.2 51203.9 627 4281.001.1-T_at MID1 NM_000384 Xp22 4281.001.1 7373.001.2 4281.1 1308.2 628 84668.002.2- FAM126A NM_032581 7p15.3 84668.002.2 7373.002.1 84668.2 4288.7 T_at 629 4240.004.1-F_at MFGE8 NM_005928 15q25 4240.004.1 7373.003.1 4240.4 244.11 630 8404.005.1-D_at SPARCL1 NM_004684 4q22.1 8404.005.1 7373.003.2 8404.5 3178.3 631 8404.032.1-B_at SPARCL1 NM_004684 4q22.1 8404.032.1 7373.003.3 8404.32 9055.12 632 57447.044.1- NDRG2 NM_016294 14q11.2 57447.044.1 7373.003.4 57447.44 9232.1 E_at 633 8626.006.2-F_at TP63 NM_003722 3q28 8626.006.2 7373.003.5 8626.6 79068.11 634 57447.051.2- NDRG2 NM_016295 14q11.2 57447.051.2 7373.003.6 57447.51 7534.1 B_at 635 1063.001.1-T_at CENPF NM_016343 1q32-q41 1063.001.1 7373.004.1 1063.1 79971.14 636 3426.002.1-T_at CFI NM_000204 4q25 3426.002.1 7373.007.1 3426.2 5621.8 637 1308.001.1-T_at COL17A1 NM_000505 10q24.3 1308.001.1 7373.008.1 1308.1 55732.3 638 389432.002.1-F SAMD5 NM_001030060 6q24.3 389432.002.1 7402.014.1 389432.2 221120.6 639 57447.017.1- NDRG2 NM_016296 14q11.2 57447.017.1 7431.064.1 57447.17 2335.45 B_at 640 2115.014.1-F_at ETV1 NM_004956 7p21.3 2115.014.1 7534.001.1 2115.14 7170.7 641 5284.004.1-T_at PIGR NM_002644 1q31-q41 5284.004.1 79068.010.1 5284.4 9055.10 642 57447.029.1- NDRG2 NM_016297 14q11.2 57447.029.1 79068.011.2 57447.29 58499.5 F_at 643 8626.006.1-F_at TP63 NM_003722 3q28 8626.006.1 79192.002.2 8626.6 54443.6 644 2982.002.1-C_at GUCY1A3 NM_000856 4q31.3-q33| 2982.002.1 79608.001.1 2982.2 59.16 4q31.1-q31.2 645 57447.047.1- NDRG2 NM_016298 14q11.2 57447.047.1 79608.002.1 57447.47 7170.14 T_at 646 5803.006.1-E_at PTPRZ1 NM_002851 7q31.3 5803.006.1 79608.008.1 5803.6 647 57447.021.1- NDRG2 NM_016299 14q11.2 57447.021.1 79608.008.2 57447.21 F_at 648 57447.039.1- NDRG2 NM_016300 14q11.2 57447.039.1 79608.009.1 57447.39 205 genes F_at 649 4281.008.2-F_at MID1 NM_000385 Xp22 4281.008.2 79627.003.1 4281.8 645 transcrits 650 57447.029.1- NDRG2 NM_016301 14q11.2 57447.029.1 79745.004.3 57447.29 1228 D_at probesets 651 65983.013.1- GRAMD3 NM_023927 5q23.2 65983.013.1 79895.001.1 65983.13 B_at 652 5284.004.1-E_at PIGR NM_002644 1q31-q41 5284.004.1 79937.001.1 5284.4 653 4240.011.1-D_at MFGE8 NM_005928 15q25 4240.011.1 79937.002.1 4240.11 654 57447.024.1- NDRG2 NM_016302 14q11.2 57447.024.1 79971.009.1 57447.24 T_at 655 6876.011.1-B_at TAGLN NM_001001523 11q23.2 6876.011.1 79971.012.1 6876.11 656 7373.003.2-T_at COL14A1 NM_021110 8q23 7373.003.2 79971.013.2 7373.3 657 3852.014.1-D_at KRT5 NM_000424 12q12-q13 3852.014.1 79971.014.1 3852.14 658 4915.005.1-D_at NTRK2 NM_001007109 9q22.1 4915.005.1 80034.002.2 4915.5 659 9768.002.2-B_at KIAA0101 NM_001029992 15q22.31 9768.002.2 80034.003.4 9768.2 660 140885.010.1-D SIRPA NM_001040025 20p13 140885.010.1 80034.004.1 140885.10 661 4638.020.1-E_at MYLK NM_005981 3q21 4638.020.1 81557.006.1 4638.20 662 57447.017.1- NDRG2 NM_016303 14q11.2 57447.017.1 81704.008.1 57447.17 C_at 663 7373.004.1-T_at COL14A1 NM_021110 8q23 7373.004.1 81704.013.1 7373.4 664 3852.008.2-E_at KRT5 NM_000424 12q12-q13 3852.008.2 8321.004.1 3852.8 665 4281.015.1-E_at MID1 NM_000386 Xp22 4281.015.1 83539.001.1 4281.15 666 8404.013.1-C_at SPARCL1 NM_004684 4q22.1 8404.013.1 8404.001.1 8404.13 667 90293.001.3- KLHL13 NM_033495 Xq23-q24 90293.001.3 8404.002.1 90293.1 T_at 668 57447.044.1- NDRG2 NM_016304 14q11.2 57447.044.1 8404.004.1 57447.44 T_at 669 23650.011.2- TRIM29 NM_012101 11q22-q23 23650.011.2 8404.004.2 23650.11 D_at 670 2335.006.1-D_at FN1 NM_002028 2q34 2335.006.1 8404.005.1 2335.6 671 57447.022.1- NDRG2 NM_016305 14q11.2 57447.022.1 8404.008.1 57447.22 T_at 672 8404.032.1-D_at SPARCL1 NM_004684 4q22.1 8404.032.1 8404.009.1 8404.32 673 8404.030.1-F_at SPARCL1 NM_004684 4q22.1 8404.030.1 8404.013.1 8404.30 674 5803.002.2-T_at PTPRZ1 NM_002851 7q31.3 5803.002.2 8404.015.1 5803.2 675 8404.004.2-C_at SPARCL1 NM_004684 4q22.1 8404.004.2 8404.017.1 8404.4 676 84441.005.1- MAML2 NM_032427 11q21 84441.005.1 8404.017.2 84441.5 C_at 677 7091.015.1-F_at TLE4 NM_007005 9q21.31 7091.015.1 8404.020.1 7091.15 678 2119.005.1-D_at ETV5 NM_004454 3q28 2119.005.1 8404.021.1 2119.5 679 7373.003.6-F_at COL14A1 NM_021110 8q23 7373.003.6 8404.022.1 7373.3 680 79608.008.1- RIC3 NM_024557 11p15.4 79608.008.1 8404.023.1 79608.8 T_at 681 3852.008.1-T_at KRT5 NM_000424 12q12-q13 3852.008.1 8404.024.1 3852.8 682 8626.007.1-T_at TP63 NM_003722 3q28 8626.007.1 8404.025.1 8626.7 683 8404.022.1-T_at SPARCL1 NM_004684 4q22.1 8404.022.1 8404.026.1 8404.22 684 8404.034.1-T_at SPARCL1 NM_004684 4q22.1 8404.034.1 8404.028.1 8404.34 685 57447.049.1- NDRG2 NM_016306 14q11.2 57447.049.1 8404.028.3 57447.49 T_at 686 5311.002.1-B_at PKD2 NM_000297 4q21-q23 5311.002.1 8404.029.1 5311.2 687 2335.025.3-T_at FN1 NM_002029 2q34 2335.025.3 8404.030.1 2335.25 688 4147.012.1-T_at MATN2 NM_002380 8q22 4147.012.1 8404.031.1 4147.12 689 301.015.1-T_at ANXA1 NM_000700 9q12-q21.2| 301.015.1 8404.032.1 301.15 9q12-q21.2 690 301.004.1-T_at ANXA1 NM_000700 9q12-q21.2| 301.004.1 8404.034.1 301.4 9q12-q21.2 691 3426.002.2-F_at CFI NM_000204 4q25 3426.002.2 8404.035.1 3426.2 692 7091.001.1-C_at TLE4 NM_007005 9q21.31 7091.001.1 84417.001.1 7091.1 693 8404.021.1-D_at SPARCL1 NM_004684 4q22.1 8404.021.1 84417.001.2 8404.21 694 7153.002.3-B_at TOP2A NM_001067 17q21-q22 7153.002.3 84441.002.1 7153.2 695 53335.002.1- BCL11A NM_018014 2p16.1 53335.002.1 84441.005.1 53335.2 E_at 696 5284.003.2-T_at PIGR NM_002644 1q31-q41 5284.003.2 84668.002.1 5284.3 697 4306.002.1-F_at NR3C2 NM_000901 4q31.1 4306.002.1 84668.002.2 4306.2 698 5284.003.2-D_at PIGR NM_002644 1q31-q41 5284.003.2 84668.003.1 5284.3 699 5803.002.1-T_at PTPRZ1 NM_002851 7q31.3 5803.002.1 84668.004.1 5803.2 700 10253.004.1- SPRY2 NM_005842 13q31.1 10253.004.1 8564.004.1 10253.4 E_at 701 23650.020.1- TRIM29 NM_012101 11q22-q23 23650.020.1 8626.002.1 23650.20 T_at 702 57447.042.1- NDRG2 NM_016307 14q11.2 57447.042.1 8626.005.1 57447.42 T_at 703 6876.023.1-F_at TAGLN NM_001001524 11q23.2 6876.023.1 8626.006.1 6876.23 704 7169.015.1-C_at TPM2 NM_003292 9p13.2-p13.1 7169.015.1 8626.006.2 7169.15 705 7153.002.4-F_at TOP2A NM_001067 17q21-q22 7153.002.4 8626.007.1 7153.2 706 4629.016.1-B_at MYH11 NM_001040138 16p13.11 4629.016.1 891.007.1 4629.16 707 6876.002.1-C_at TAGLN NM_001001525 11q23.2 6876.002.1 90231.001.1 6876.2 708 65983.007.1- GRAMD3 NM_023927 5q23.2 65983.007.1 90293.001.3 65983.7 T_at 709 7373.003.2-F_at COL14A1 NM_021110 8q23 7373.003.2 9055.010.1 7373.3 710 152015.004.1-T ROPN1B NM_001012337 3q21.2 152015.004.1 9055.011.1 152015.4 711 8404.004.2-B_at SPARCL1 NM_004684 4q22.1 8404.004.2 9055.012.1 8404.4 712 6285.001.1-B_at S100B NM_006272 21q22.3 6285.001.1 9055.013.1 6285.1 713 2115.007.1-E_at ETV1 NM_004956 7p21.3 2115.007.1 9055.014.1 2115.7 714 2.013.1-T_at A2M NM_000014 12p13.3-p12.3 2.013.1 9055.017.1 2.13 715 6289.005.1-T_at SAA2 NM_030754 11p15.1-p14 6289.005.1 9055.019.1 6289.5 716 9232.002.1-T_at PTTG1 NM_004219 5q35.1 9232.002.1 9055.020.1 9232.2 717 59.014.1-B_at ACTA2 NM_001613 10q23.3 59.014.1 9073.001.1 59.14 718 59.031.1-F_at ACTA2 NM_001613 10q23.3 59.031.1 90865.006.1 59.31 719 3084.011.1-T_at NRG1 NM_004514 8p12 3084.011.1 9134.001.1 3084.11 720 3872.005.1-F_at KRT17 NM_000422 17q12-q21 3872.005.1 9232.001.1 3872.5 721 3084.012.3-F_at NRG1 NM_004515 8p12 3084.012.3 9232.002.1 3084.12 722 81704.008.1- DOCK8 NM_203447 9p24.3 81704.008.1 9232.004.1 81704.8 F_at 723 140885.010.2-C SIRPA NM_001040026 20p13 140885.010.2 9413.001.1 140885.10 724 338707.006.1-E B4GALNT4 NM_178537 11p15.5 338707.006.1 9413.001.2 338707.6 725 23266.008.2- LPHN2 NM_012302 1p31.1 23266.008.2 9413.002.1 23266.8 T_at 726 120.005.2-E_at ADD3 NM_001121 10q24.2-q24.3 120.005.2 9413.003.1 120.5 727 4281.009.1-E_at MID1 NM_000387 Xp22 4281.009.1 9413.006.1 4281.9 728 4094.001.1-T_at MAF NM_001031804 16q22-q23 4094.001.1 94274.002.1 4094.1 729 2995.001.1-T_at GYPC NM_002101 2q14-q21 2995.001.1 94274.003.1 2995.1 730 4638.011.1-T_at MYLK NM_005982 3q21 4638.011.1 9452.001.1 4638.11 731 2335.017.1-T_at FN1 NM_002030 2q34 2335.017.1 9477.006.1 2335.17 732 5284.001.1-F_at PIGR NM_002644 1q31-q41 5284.001.1 9481.001.1 5284.1 733 8404.026.1-D_at SPARCL1 NM_004684 4q22.1 8404.026.1 9493.001.1 8404.26 734 2335.009.1-D_at FN1 NM_002031 2q34 2335.009.1 9493.004.1 2335.9 735 10461.002.2- MERTK NM_006343 2q14.1 10461.002.2 9493.006.1 10461.2 F_at 736 84441.002.1- MAML2 NM_032427 11q21 84441.002.1 9768.002.2 84441.2 T_at 737 147495.006.1-T APCDD1 NM_153000 18p11.22 147495.006.1 9768.004.1 147495.6 738 7091.010.1-B_at TLE4 NM_007005 9q21.31 7091.010.1 9768.005.1 7091.10 739 8404.008.1-C_at SPARCL1 NM_004684 4q22.1 8404.008.1 9898.015.2 8404.8 740 6376.001.2-C_at CX3CL1 NM_002996 16q13 6376.001.2 6376.1 741 3832.002.1-B_at KIF11 NM_004523 10q24.1 3832.002.1 3832.2 742 59.034.2-T_at ACTA2 NM_001613 10q23.3 59.034.2 59.34 743 147495.005.1-B APCDD1 NM_153000 18p11.22 147495.005.1 147495.5 744 3872.005.1-T_at KRT17 NM_000422 17q12-q21 3872.005.1 3872.5 745 79895.001.1- ATP8B4 NM_024837 15q21.2 79895.001.1 79895.1 D_at 746 57447.038.1- NDRG2 NM_016308 14q11.2 57447.038.1 57447.38 T_at 747 7373.008.1-T_at COL14A1 NM_021110 8q23 7373.008.1 7373.8 748 4744.004.1-C_at NEFH NM_021076 22q12.2 4744.004.1 4744.4 749 140885.010.1-T SIRPA NM_001040027 20p13 140885.010.1 140885.10 750 6876.016.2-E_at TAGLN NM_001001526 11q23.2 6876.016.2 6876.16 751 8404.015.1-T_at SPARCL1 NM_004684 4q22.1 8404.015.1 8404.15 752 4281.014.1-T_at MID1 NM_000388 Xp22 4281.014.1 4281.14 753 4288.006.1-F_at MKI67 NM_002417 10q25-qter 4288.006.1 4288.6 754 25925.009.1- ZNF521 NM_015461 18q11.2 25925.009.1 25925.9 E_at 755 4240.009.1-B_at MFGE8 NM_005928 15q25 4240.009.1 4240.9 756 667.010.1-E_at DST NM_001725 6p12.1 667.010.1 667.10 757 3866.005.1-B_at KRT15 NM_002275 17q21.2 3866.005.1 3866.5 758 57447.011.1- NDRG2 NM_016309 14q11.2 57447.011.1 57447.11 T_at 759 57447.034.1- NDRG2 NM_016310 14q11.2 57447.034.1 57447.34 B_at 760 25802.004.1- LMOD1 NM_012134 1q32 25802.004.1 25802.4 B_at 761 8404.024.1-T_at SPARCL1 NM_004684 4q22.1 8404.024.1 8404.24 762 57447.032.1- NDRG2 NM_016311 14q11.2 57447.032.1 57447.32 T_at 763 667.021.1-F_at DST NM_001726 6p12.1 667.021.1 667.21 764 5858.001.2-F_at PZP NM_002864 12p13-p12.2 5858.001.2 5858.1 765 51062.008.1- SPG3A NM_015915 14q22.1 51062.008.1 51062.8 T_at 766 2335.013.1-F_at FN1 NM_002032 2q34 2335.013.1 2335.13 767 2568.001.2-T_at GABRP NM_014211 5q33-q34 2568.001.2 2568.1 768 7170.005.2-D_at TPM3 NM_001043351 1q21.2 7170.005.2 7170.5 769 57447.034.1- NDRG2 NM_016312 14q11.2 57447.034.1 57447.34 F_at 770 7153.002.6-C_at TOP2A NM_001067 17q21-q22 7153.002.6 7153.2 771 2568.003.1-T_at GABRP NM_014211 5q33-q34 2568.003.1 2568.3 772 59.008.2-T_at ACTA2 NM_001613 10q23.3 59.008.2 59.8 773 9898.015.2-B_at UBAP2L NM_014847 1q21.3 9898.015.2 9898.15 774 7018.013.1-T_at TF NM_001063 3q22.1 7018.013.1 7018.13 775 7170.034.2-D_at TPM3 NM_001043352 1q21.2 7170.034.2 7170.34 776 3866.004.1-E_at KRT15 NM_002275 17q21.2 3866.004.1 3866.4 777 5284.001.1-T_at PIGR NM_002644 1q31-q41 5284.001.1 5284.1 778 2.002.1-C_at A2M NM_000014 12p13.3-p12.3 2.002.1 2.2 779 57447.050.1- NDRG2 NM_016313 14q11.2 57447.050.1 57447.50 T_at 780 7018.014.1-F_at TF NM_001063 3q22.1 7018.014.1 7018.14 781 2335.032.1-D_at FN1 NM_002033 2q34 2335.032.1 2335.32 782 3866.002.1-C_at KRT15 NM_002275 17q21.2 3866.002.1 3866.2 783 57447.043.1- NDRG2 NM_016314 14q11.2 57447.043.1 57447.43 T_at 784 51201.005.1- ZDHHC2 NM_016353 8p21.3-p22 51201.005.1 51201.5 D_at 785 51203.003.1- NUSAP1 NM_016360 15q15.1 51203.003.1 51203.3 T_at 786 9493.001.1-F_at KIF23 NM_004856 15q23 9493.001.1 9493.1 787 57447.024.1- NDRG2 NM_016315 14q11.2 57447.024.1 57447.24 B_at 788 80034.003.4- FAM130A2 NM_024969 2q24.3 80034.003.4 80034.3 B_at 789 7170.016.3-C_at TPM3 NM_001043353 1q21.2 7170.016.3 7170.16 790 65983.003.1- GRAMD3 NM_023927 5q23.2 65983.003.1 65983.3 T_at 791 57447.026.1- NDRG2 NM_016316 14q11.2 57447.026.1 57447.26 T_at 792 440421.001.1-F 440421.001.1 440421.1 793 301.008.1-D_at ANXA1 NM_000700 9q12-q21.2| 301.008.1 301.8 9q12-q21.2 794 80034.002.2- FAM130A2 NM_024969 2q24.3 80034.002.2 80034.2 T_at 795 7153.002.5-B_at TOP2A NM_001067 17q21-q22 7153.002.5 7153.2 796 3852.023.1-T_at KRT5 NM_000424 12q12-q13 3852.023.1 3852.23 797 8404.013.1-F_at SPARCL1 NM_004684 4q22.1 8404.013.1 8404.13 798 2.018.1-C_at A2M NM_000014 12p13.3-p12.3 2.018.1 2.18 799 10124.003.1- ARL4A NM_001037165 7p21-p15.3 10124.003.1 10124.3 B_at 800 3852.008.2-F_at KRT5 NM_000424 12q12-q13 3852.008.2 3852.8 801 4288.006.2-T_at MKI67 NM_002417 10q25-qter 4288.006.2 4288.6 802 8404.026.1-C_at SPARCL1 NM_004684 4q22.1 8404.026.1 8404.26 803 23650.019.1- TRIM29 NM_012101 11q22-q23 23650.019.1 23650.19 C_at 804 7170.027.1-T_at TPM3 NM_001043354 1q21.2 7170.027.1 7170.27 805 54928.003.1- IMPAD1 NM_017813 8q12.1 54928.003.1 54928.3 E_at 806 2335.025.1-B_at FN1 NM_002034 2q34 2335.025.1 2335.25 807 3084.010.1-T_at NRG1 NM_004516 8p12 3084.010.1 3084.10 808 57447.051.1- NDRG2 NM_016317 14q11.2 57447.051.1 57447.51 T_at 809 80034.003.4- FAM130A2 NM_024969 2q24.3 80034.003.4 80034.3 T_at 810 2568.005.1-D_at GABRP NM_014211 5q33-q34 2568.005.1 2568.5 811 8404.032.1-F_at SPARCL1 NM_004684 4q22.1 8404.032.1 8404.32 812 2115.003.1-E_at ETV1 NM_004956 7p21.3 2115.003.1 2115.3 813 57447.035.1- NDRG2 NM_016318 14q11.2 57447.035.1 57447.35 T_at 814 8404.009.1-T_at SPARCL1 NM_004684 4q22.1 8404.009.1 8404.9 815 8404.028.3-B_at SPARCL1 NM_004684 4q22.1 8404.028.3 8404.28 816 6289.003.1-B_at SAA2 NM_030754 11p15.1-p14 6289.003.1 6289.3 817 7170.025.1-F_at TPM3 NM_001043355 1q21.2 7170.025.1 7170.25 818 8404.030.1-D_at SPARCL1 NM_004684 4q22.1 8404.030.1 8404.30 819 8404.009.1-F_at SPARCL1 NM_004684 4q22.1 8404.009.1 8404.9 820 2335.009.1-T_at FN1 NM_002035 2q34 2335.009.1 2335.9 821 22974.007.1- TPX2 NM_012112 20q11.2 22974.007.1 22974.7 F_at 822 3426.002.1-B_at CFI NM_000204 4q25 3426.002.1 3426.2 823 4638.003.1-D_at MYLK NM_005983 3q21 4638.003.1 4638.3 824 4147.011.1-T_at MATN2 NM_002381 8q22 4147.011.1 4147.11 825 6876.016.2-T_at TAGLN NM_001001527 11q23.2 6876.016.2 6876.16 826 23650.003.1- TRIM29 NM_012101 11q22-q23 23650.003.1 23650.3 F_at 827 4744.004.1-E_at NEFH NM_021076 22q12.2 4744.004.1 4744.4 828 64168.010.1- EFCBP1 NM_022351 8q21.3 64168.010.1 64168.10 F_at 829 9073.001.1-F_at CLDN8 NM_199328 21q22.11 9073.001.1 9073.1 830 5288.001.3-B_at PIK3C2G NM_004570 12p12 5288.001.3 5288.1 831 3866.005.1-D_at KRT15 NM_002275 17q21.2 3866.005.1 3866.5 832 8404.021.1-T_at SPARCL1 NM_004684 4q22.1 8404.021.1 8404.21 833 25925.011.1- ZNF521 NM_015461 18q11.2 25925.011.1 25925.11 E_at 834 23266.001.3- LPHN2 NM_012302 1p31.1 23266.001.3 23266.1 F_at 835 9232.004.1-F_at PTTG1 NM_004219 5q35.1 9232.004.1 9232.4 836 4147.005.2-F_at MATN2 NM_002382 8q22 4147.005.2 4147.5 837 2335.025.3-B_at FN1 NM_002036 2q34 2335.025.3 2335.25 838 4638.006.1-C_at MYLK NM_005984 3q21 4638.006.1 4638.6 839 147804.004.1-T LOC147804 NM_001010856 19q13.41 147804.004.1 147804.4 840 81704.013.1- DOCK8 NM_203447 9p24.3 81704.013.1 81704.13 D_at 841 54443.013.1- ANLN NM_018685 7p15-p14 54443.013.1 54443.13 B_at 842 1410.005.1-T_at CRYAB NM_001885 11q22.3-q23.1 1410.005.1 1410.5 843 25925.009.1- ZNF521 NM_015461 18q11.2 25925.009.1 25925.9 T_at 844 3204.001.1-T_at HOXA7 NM_006896 7p15-p14 3204.001.1 3204.1 845 29997.012.1- GLTSCR2 NM_015710 19q13.3 29997.012.1 29997.12 F_at 846 2.005.1-C_at A2M NM_000014 12p13.3-p12.3 2.005.1 2.5 847 140885.011.1-F SIRPA NM_001040028 20p13 140885.011.1 140885.11 848 7153.002.3-F_at TOP2A NM_001067 17q21-q22 7153.002.3 7153.2 849 1063.002.1-F_at CENPF NM_016343 1q32-q41 1063.002.1 1063.2 850 10144.021.1- FAM13A1 NM_001015046 4q22.1 10144.021.1 10144.21 F_at 851 8404.025.1-E_at SPARCL1 NM_004684 4q22.1 8404.025.1 8404.25 852 6876.020.1-B_at TAGLN NM_001001528 11q23.2 6876.020.1 6876.20 853 7170.006.1-C_at TPM3 NM_001043356 1q21.2 7170.006.1 7170.6 854 10051.016.1- SMC4 NM_001002799 3q26.1 10051.016.1 10051.16 T_at 855 5288.001.2-D_at PIK3C2G NM_004570 12p12 5288.001.2 5288.1 856 7018.029.1-T_at TF NM_001063 3q22.1 7018.029.1 7018.29 857 5627.002.1-B_at PROS1 NM_000313 3q11.2 5627.002.1 5627.2 858 57447.037.1- NDRG2 NM_016319 14q11.2 57447.037.1 57447.37 T_at 859 4147.005.2-D_at MATN2 NM_002383 8q22 4147.005.2 4147.5 860 8404.023.1-T_at SPARCL1 NM_004684 4q22.1 8404.023.1 8404.23 861 3872.006.1-D_at KRT17 NM_000422 17q12-q21 3872.006.1 3872.6 862 399687.001.1-C MYO18A NM_078471 17q11.2 399687.001.1 399687.1 863 3815.002.4-D_at KIT NM_000237 4q11-q12 3815.002.4 3815.2 864 59.034.2-B_at ACTA2 NM_001613 10q23.3 59.034.2 59.34 865 8404.035.1-T_at SPARCL1 NM_004684 4q22.1 8404.035.1 8404.35 866 8404.030.1-T_at SPARCL1 NM_004684 4q22.1 8404.030.1 8404.30 867 54997.002.2- TESC NM_017899 12q24.22 54997.002.2 54997.2 T_at 868 57561.001.1- ARRDC3 NM_020801 5q14.3 57561.001.1 57561.1 F_at 869 8404.031.1-T_at SPARCL1 NM_004684 4q22.1 8404.031.1 8404.31 870 2.025.1-E_at A2M NM_000014 12p13.3-p12.3 2.025.1 2.25 871 699.002.1-F_at BUB1 NM_004336 2q14 699.002.1 699.2 872 57447.041.1- NDRG2 NM_016320 14q11.2 57447.041.1 57447.41 F_at 873 9055.013.1-D_at PRC1 NM_003981 15q26.1 9055.013.1 9055.13 874 8404.008.1-D_at SPARCL1 NM_004684 4q22.1 8404.008.1 8404.8 875 7018.028.1-T_at TF NM_001063 3q22.1 7018.028.1 7018.28 876 2568.005.1-T_at GABRP NM_014211 5q33-q34 2568.005.1 2568.5 877 10051.005.3- SMC4 NM_001002800 3q26.1 10051.005.3 10051.5 T_at 878 2568.002.2-T_at GABRP NM_014211 5q33-q34 2568.002.2 2568.2 879 4147.004.1-F_at MATN2 NM_002384 8q22 4147.004.1 4147.4 880 2938.001.1-T_at GSTA1 NM_145740 6p12.1 2938.001.1 2938.1 881 1308.007.1-E_at COL17A1 NM_000506 10q24.3 1308.007.1 1308.7 882 2982.012.1-T_at GUCY1A3 NM_000856 4q31.3-q33| 2982.012.1 2982.12 4q31.1-q31.2 883 8404.028.1-D_at SPARCL1 NM_004684 4q22.1 8404.028.1 8404.28 884 7373.001.2-B_at COL14A1 NM_021110 8q23 7373.001.2 7373.1 885 2893.002.2-B_at GRIA4 NM_000829 11q22 2893.002.2 2893.2 886 116369.006.4-C SLC26A8 NM_052961 6p21 116369.006.4 116369.6 887 6304.007.1-T_at SATB1 NM_002971 3p23 6304.007.1 6304.7 888 2335.035.1-T_at FN1 NM_002037 2q34 2335.035.1 2335.35 889 4751.002.1-T_at NEK2 NM_002497 1q32.2-q41 4751.002.1 4751.2 890 64151.001.2- NCAPG NM_022346 4p15.33 64151.001.2 64151.1 T_at 891 29089.003.1- UBE2T NM_014176 1q32.1 29089.003.1 29089.3 T_at 892 59.031.1-B_at ACTA2 NM_001613 10q23.3 59.031.1 59.31 893 7018.025.1-T_at TF NM_001063 3q22.1 7018.025.1 7018.25 894 3860.008.1-T_at KRT13 NM_002276 17q12-q21.2 3860.008.1 3860.8 895 5858.003.3-F_at PZP NM_002864 12p13-p12.2 5858.003.3 5858.3 896 8404.009.1-C_at SPARCL1 NM_004684 4q22.1 8404.009.1 8404.9 897 7169.022.1-T_at TPM2 NM_003293 9p13.2-p13.1 7169.022.1 7169.22 898 25925.006.1- ZNF521 NM_015461 18q11.2 25925.006.1 25925.6 T_at 899 59.049.1-F_at ACTA2 NM_001613 10q23.3 59.049.1 59.49 900 5284.003.1-T_at PIGR NM_002644 1q31-q41 5284.003.1 5284.3 901 2982.002.1-F_at GUCY1A3 NM_000856 4q31.3-q33| 2982.002.1 2982.2 4q31.1-q31.2 902 2568.002.1-T_at GABRP NM_014211 5q33-q34 2568.002.1 2568.2 903 301.004.1-B_at ANXA1 NM_000700 9q12-q21.2| 301.004.1 301.4 9q12-q21.2 904 25925.011.1- ZNF521 NM_015461 18q11.2 25925.011.1 25925.11 F_at 905 59.004.1-F_at ACTA2 NM_001613 10q23.3 59.004.1 59.4 906 6289.002.1-B_at SAA2 NM_030754 11p15.1-p14 6289.002.1 6289.2 907 244.003.1-C_at ANXA8L2 NM_001630 10q11.22 244.003.1 244.3 908 11065.008.1- UBE2C NM_007020 20q13.12 11065.008.1 11065.8 C_at 909 7091.006.1-T_at TLE4 NM_007005 9q21.31 7091.006.1 7091.6 910 79608.009.1- RIC3 NM_024557 11p15.4 79608.009.1 79608.9 F_at 911 9413.002.1-T_at C9orf61 NM_004816 9q13-q21 9413.002.1 9413.2 912 7431.064.1-C_at VIM NM_003380 10p13 7431.064.1 7431.64 913 8404.029.1-E_at SPARCL1 NM_004684 4q22.1 8404.029.1 8404.29 914 6876.020.1-T_at TAGLN NM_001001529 11q23.2 6876.020.1 6876.20 915 301.005.1-T_at ANXA1 NM_000700 9q12-q21.2| 301.005.1 301.5 9q12-q21.2 916 9055.014.1-T_at PRC1 NM_003982 15q26.1 9055.014.1 9055.14 917 4281.023.1-T_at MID1 NM_000389 Xp22 4281.023.1 4281.23 918 3868.005.1-D_at KRT16 NM_005557 17q12-q21 3868.005.1 3868.5 919 1062.001.6-B_at CENPE NM_001813 4q24-q25 1062.001.6 1062.1 920 5858.005.1-T_at PZP NM_002864 12p13-p12.2 5858.005.1 5858.5 921 51201.007.1- ZDHHC2 NM_016353 8p21.3-p22 51201.007.1 51201.7 F_at 922 4240.001.1-B_at MFGE8 NM_005928 15q25 4240.001.1 4240.1 923 8404.029.1-T_at SPARCL1 NM_004684 4q22.1 8404.029.1 8404.29 924 9413.001.1-T_at C9orf61 NM_004816 9q13-q21 9413.001.1 9413.1 925 9768.005.1-T_at KIAA0101 NM_001029993 15q22.31 9768.005.1 9768.5 926 11197.001.1- WIF1 NM_007191 12q14.3 11197.001.1 11197.1 T_at 927 6285.002.1-T_at S100B NM_006272 21q22.3 6285.002.1 6285.2 928 2335.006.2-F_at FN1 NM_002038 2q34 2335.006.2 2335.6 929 7169.001.1-C_at TPM2 NM_003294 9p13.2-p13.1 7169.001.1 7169.1 930 9493.004.1-T_at KIF23 NM_004856 15q23 9493.004.1 9493.4 931 4601.014.1-T_at MXI1 NM_001008541 10q24-q25 4601.014.1 4601.14 932 51203.002.2- NUSAP1 NM_016361 15q15.1 51203.002.2 51203.2 F_at 933 7018.022.1-F_at TF NM_001063 3q22.1 7018.022.1 7018.22 934 4288.009.1-F_at MKI67 NM_002417 10q25-qter 4288.009.1 4288.9 935 8321.004.1-D_at FZD1 NM_003505 7q21 8321.004.1 8321.4 936 8564.004.1-E_at KMO NM_003679 1q42-q44 8564.004.1 8564.4 937 7169.022.1-C_at TPM2 NM_003295 9p13.2-p13.1 7169.022.1 7169.22 938 29127.013.1- RACGAP1 NM_013277 12q13.13 29127.013.1 29127.13 T_at 939 2.018.1-B_at A2M NM_000014 12p13.3-p12.3 2.018.1 2.18 940 2.005.1-D_at A2M NM_000014 12p13.3-p12.3 2.005.1 2.5 941 1058.004.2-T_at CENPA NM_001042426 2p24-p21 1058.004.2 1058.4 942 2232.014.1-C_at FDXR NM_004110 17q24-q25 2232.014.1 2232.14 943 23650.005.1- TRIM29 NM_012101 11q22-q23 23650.005.1 23650.5 E_at 944 5621.002.2-T_at PRNP NM_000311 20p13 5621.002.2 5621.2 945 51201.005.1- ZDHHC2 NM_016353 8p21.3-p22 51201.005.1 51201.5 B_at 946 667.022.1-F_at DST NM_001727 6p12.1 667.022.1 667.22 947 54443.012.1- ANLN NM_018685 7p15-p14 54443.012.1 54443.12 C_at 948 25802.003.1- LMOD1 NM_012134 1q32 25802.003.1 25802.3 C_at 949 3479.003.1-T_at IGF1 NM_000618 12q22-q23 3479.003.1 3479.3 950 94274.003.1- PPP1R14A NM_033256 19q13.1 94274.003.1 94274.3 D_at 951 84668.003.1- FAM126A NM_032581 7p15.3 84668.003.1 84668.3 T_at 952 22974.008.1- TPX2 NM_012112 20q11.2 22974.008.1 22974.8 E_at 953 55656.007.3- INTS8 NM_017864 8q22.1 55656.007.3 55656.7 B_at 954 29127.002.1- RACGAP1 NM_013277 12q13.13 29127.002.1 29127.2 T_at 955 4281.012.2-T_at MID1 NM_000390 Xp22 4281.012.2 4281.12 956 2335.013.1-B_at FN1 NM_002039 2q34 2335.013.1 2335.13 957 79627.003.1- OGFRL1 NM_024576 6q13 79627.003.1 79627.3 B_at 958 2982.014.1-T_at GUCY1A3 NM_000856 4q31.3-q33| 2982.014.1 2982.14 4q31.1-q31.2 959 2335.053.1-T_at FN1 NM_002040 2q34 2335.053.1 2335.53 960 667.001.1-F_at DST NM_001728 6p12.1 667.001.1 667.1 961 8404.030.1-B_at SPARCL1 NM_004684 4q22.1 8404.030.1 8404.30 962 2335.025.1-C_at FN1 NM_002041 2q34 2335.025.1 2335.25 963 140885.010.3-D SIRPA NM_001040029 20p13 140885.010.3 140885.10 964 55366.001.2- LGR4 NM_018490 11p14-p13 55366.001.2 55366.1 F_at 965 7169.015.1-D_at TPM2 NM_003296 9p13.2-p13.1 7169.015.1 7169.15 966 57447.002.1- NDRG2 NM_016321 14q11.2 57447.002.1 57447.2 B_at 967 22974.008.1- TPX2 NM_012112 20q11.2 22974.008.1 22974.8 T_at 968 6876.011.1-C_at TAGLN NM_001001530 11q23.2 6876.011.1 6876.11 969 4281.008.2-D_at MID1 NM_000391 Xp22 4281.008.2 4281.8 970 59.008.1-T_at ACTA2 NM_001613 10q23.3 59.008.1 59.8 971 23266.008.1- LPHN2 NM_012302 1p31.1 23266.008.1 23266.8 F_at 972 2568.003.2-T_at GABRP NM_014211 5q33-q34 2568.003.2 2568.3 973 5311.003.1-T_at PKD2 NM_000297 4q21-q23 5311.003.1 5311.3 974 6304.011.1-T_at SATB1 NM_002971 3p23 6304.011.1 6304.11 975 3861.008.1-B_at KRT14 NM_000526 17q12-q21 3861.008.1 3861.8 976 7018.013.1-B_at TF NM_001063 3q22.1 7018.013.1 7018.13 977 8404.005.1-F_at SPARCL1 NM_004684 4q22.1 8404.005.1 8404.5 978 7170.027.1-C_at TPM3 NM_001043357 1q21.2 7170.027.1 7170.27 979 8404.023.1-C_at SPARCL1 NM_004684 4q22.1 8404.023.1 8404.23 980 7373.007.1-C_at COL14A1 NM_021110 8q23 7373.007.1 7373.7 981 1410.009.1-T_at CRYAB NM_001885 11q22.3-q23.1 1410.009.1 1410.9 982 79745.004.3- CLIP4 NM_024692 2p23.2 79745.004.3 79745.4 D_at 983 24137.004.1- KIF4A NM_012310 Xq13.1 24137.004.1 24137.4 T_at 984 6241.013.1-B_at RRM2 NM_001034 2p25-p24 6241.013.1 6241.13 985 1410.001.1-T_at CRYAB NM_001885 11q22.3-q23.1 1410.001.1 1410.1 986 4781.015.2-B_at NFIB NM_005596 9p24.1 4781.015.2 4781.15 987 72.002.1-T_at ACTG2 NM_001615 2p13.1 72.002.1 72.2 988 4833.004.1-D_at NME4 NM_005009 16p13.3 4833.004.1 4833.4 989 57447.024.1- NDRG2 NM_016322 14q11.2 57447.024.1 57447.24 D_at 990 2982.013.2-T_at GUCY1A3 NM_000856 4q31.3-q33| 2982.013.2 2982.13 4q31.1-q31.2 991 79971.012.1- GPR177 NM_001002292 1p31.3 79971.012.1 79971.12 T_at 992 8404.028.3-C_at SPARCL1 NM_004684 4q22.1 8404.028.3 8404.28 993 4638.011.1-E_at MYLK NM_005985 3q21 4638.011.1 4638.11 994 7169.004.1-C_at TPM2 NM_003297 9p13.2-p13.1 7169.004.1 7169.4 995 4288.004.1-F_at MKI67 NM_002417 10q25-qter 4288.004.1 4288.4 996 59.012.2-C_at ACTA2 NM_001613 10q23.3 59.012.2 59.12 997 301.008.1-B_at ANXA1 NM_000700 9q12-q21.2| 301.008.1 301.8 9q12-q21.2 998 4281.012.1-T_at MID1 NM_000381; Xp22 4281.012.1 4281.12 999 2335.016.1-F_at FN1 NM_002042 2q34 2335.016.1 2335.16 1000 259266.003.1-C ASPM NM_018136 1q31 259266.003.1 259266.3 1001 9055.020.1-T_at PRC1 NM_003983 15q26.1 9055.020.1 9055.20 1002 7091.016.1-T_at TLE4 NM_007005 9q21.31 7091.016.1 7091.16 1003 59.023.1-T_at ACTA2 NM_001613 10q23.3 59.023.1 59.23 1004 57162.010.1- PELI1 NM_020651 2p13.3 57162.010.1 57162.10 B_at 1005 4781.002.2-D_at NFIB NM_005596 9p24.1 4781.002.2 4781.2 1006 6122.037.1-T_at RPL3 NM_000967 22q13 6122.037.1 6122.37 1007 4240.015.1-B_at MFGE8 NM_005928 15q25 4240.015.1 4240.15 1008 59.034.1-T_at ACTA2 NM_001613 10q23.3 59.034.1 59.34 1009 8404.004.2-D_at SPARCL1 NM_004684 4q22.1 8404.004.2 8404.4 1010 9413.001.2-T_at C9orf61 NM_004816 9q13-q21 9413.001.2 9413.1 1011 2.005.1-F_at A2M NM_000014 12p13.3-p12.3 2.005.1 2.5 1012 6304.002.1-T_at SATB1 NM_002971 3p23 6304.002.1 6304.2 1013 3852.005.1-C_at KRT5 NM_000424 12q12-q13 3852.005.1 3852.5 1014 7170.027.1-B_at TPM3 NM_001043358 1q21.2 7170.027.1 7170.27 1015 301.013.1-T_at ANXA1 NM_000700 9q12-q21.2| 301.013.1 301.13 9q12-q21.2 1016 6304.012.1-F_at SATB1 NM_002971 3p23 6304.012.1 6304.12 1017 57447.051.2- NDRG2 NM_016323 14q11.2 57447.051.2 57447.51 T_at 1018 11065.005.1- UBE2C NM_007021 20q13.12 11065.005.1 11065.5 C_at 1019 6422.002.1-F_at SFRP1 NM_003012 8p12-p11.1 6422.002.1 6422.2 1020 6241.013.1-F_at RRM2 NM_001034 2p25-p24 6241.013.1 6241.13 1021 2335.032.1-T_at FN1 NM_002043 2q34 2335.032.1 2335.32 1022 11065.005.2- UBE2C NM_007022 20q13.12 11065.005.2 11065.5 T_at 1023 2335.028.1-D_at FN1 NM_002044 2q34 2335.028.1 2335.28 1024 29997.016.1- GLTSCR2 NM_015710 19q13.3 29997.016.1 29997.16 F_at 1025 7018.014.1-T_at TF NM_001063 3q22.1 7018.014.1 7018.14 1026 1410.011.1-E_at CRYAB NM_001885 11q22.3-q23.1 1410.011.1 1410.11 1027 7170.040.1-E_at TPM3 NM_001043359 1q21.2 7170.040.1 7170.40 1028 6289.002.2-F_at SAA2 NM_030754 11p15.1-p14 6289.002.2 6289.2 1029 7373.003.4-C_at COL14A1 NM_021110 8q23 7373.003.4 7373.3 1030 7170.041.1-E_at TPM3 NM_001043360 1q21.2 7170.041.1 7170.41 1031 128553.003.1-B TSHZ2 NM_173485 20q13.2 128553.003.1 128553.3 1032 4094.002.1-D_at MAF NM_001031805 16q22-q23 4094.002.1 4094.2 1033 7113.011.1-T_at TMPRSS2 NM_005656 21q22.3 7113.011.1 7113.11 1034 7170.002.1-C_at TPM3 NM_001043361 1q21.2 7170.002.1 7170.2 1035 8404.017.2-T_at SPARCL1 NM_004684 4q22.1 8404.017.2 8404.17 1036 59.029.1-T_at ACTA2 NM_001613 10q23.3 59.029.1 59.29 1037 29089.001.1- UBE2T NM_014176 1q32.1 29089.001.1 29089.1 T_at 1038 358.012.1-T_at AQP1 NM_198098 7p14 358.012.1 358.12 1039 9134.001.1-B_at CCNE2 NM_057735 8q22.1 9134.001.1 9134.1 1040 2335.013.1-C_at FN1 NM_002045 2q34 2335.013.1 2335.13 1041 1410.010.1-T_at CRYAB NM_001885 11q22.3-q23.1 1410.010.1 1410.10 1042 2327.003.4-F_at FMO2 NM_001460 1q23-q25 2327.003.4 2327.3 1043 59.042.1-T_at ACTA2 NM_001613 10q23.3 59.042.1 59.42 1044 6304.007.2-T_at SATB1 NM_002971 3p23 6304.007.2 6304.7 1045 8404.031.1-B_at SPARCL1 NM_004684 4q22.1 8404.031.1 8404.31 1046 6289.001.1-F_at SAA2 NM_030754 11p15.1-p14 6289.001.1 6289.1 1047 1410.006.1-T_at CRYAB NM_001885 11q22.3-q23.1 1410.006.1 1410.6 1048 80034.004.1- FAM130A2 NM_024969 2q24.3 80034.004.1 80034.4 T_at 1049 1410.008.1-T_at CRYAB NM_001885 11q22.3-q23.1 1410.008.1 1410.8 1050 57447.051.2- NDRG2 NM_016324 14q11.2 57447.051.2 57447.51 D_at 1051 7170.016.3-B_at TPM3 NM_001043362 1q21.2 7170.016.3 7170.16 1052 4240.001.1-C_at MFGE8 NM_005928 15q25 4240.001.1 4240.1 1053 6288.001.1-T_at SAA1 NM_000331 11p15.1 6288.001.1 6288.1 1054 7018.014.1-C_at TF NM_001063 3q22.1 7018.014.1 7018.14 1055 8404.020.1-T_at SPARCL1 NM_004684 4q22.1 8404.020.1 8404.20 1056 6289.001.2-F_at SAA2 NM_030754 11p15.1-p14 6289.001.2 6289.1 1057 6876.011.1-F_at TAGLN NM_001001531 11q23.2 6876.011.1 6876.11 1058 8404.031.1-C_at SPARCL1 NM_004684 4q22.1 8404.031.1 8404.31 1059 57447.010.1- NDRG2 NM_016325 14q11.2 57447.010.1 57447.10 T_at 1060 1410.007.2-C_at CRYAB NM_001885 11q22.3-q23.1 1410.007.2 1410.7 1061 59.012.2-B_at ACTA2 NM_001613 10q23.3 59.012.2 59.12 1062 3459.005.1-T_at IFNGR1 NM_000416 6q23-q24 3459.005.1 3459.5 1063 301.013.1-C_at ANXA1 NM_000700 9q12-q21.2| 301.013.1 301.13 9q12-q21.2 1064 83539.001.1- CHST9 NM_031422 18q11.2 83539.001.1 83539.1 D_at 1065 6288.004.1-F_at SAA1 NM_000332 11p15.1 6288.004.1 6288.4 1066 4781.016.1-E_at NFIB NM_005596 9p24.1 4781.016.1 4781.16 1067 29997.012.1- GLTSCR2 NM_015710 19q13.3 29997.012.1 29997.12 E_at 1068 57447.021.1- NDRG2 NM_016326 14q11.2 57447.021.1 57447.21 T_at 1069 3426.002.1-C_at CFI NM_000204 4q25 3426.002.1 3426.2 1070 53829.001.2- P2RY13 NM_023914 3q24 53829.001.2 53829.1 T_at 1071 2115.001.2-B_at ETV1 NM_004956 7p21.3 2115.001.2 2115.1 1072 10051.008.1- SMC4 NM_001002801 3q26.1 10051.008.1 10051.8 T_at 1073 1033.002.1-T_at CDKN3 NM_005192 14q22 1033.002.1 1033.2 1074 2335.005.1-D_at FN1 NM_002046 2q34 2335.005.1 2335.5 1075 7113.009.1-T_at TMPRSS2 NM_005656 21q22.3 7113.009.1 7113.9 1076 3866.002.1-B_at KRT15 NM_002275 17q21.2 3866.002.1 3866.2 1077 140885.014.1-D SIRPA NM_001040030 20p13 140885.014.1 140885.14 1078 7168.003.1-T_at TPM1 NM_000366 15q22.1 7168.003.1 7168.3 1079 79608.001.1- RIC3 NM_024557 11p15.4 79608.001.1 79608.1 T_at 1080 79608.008.2- RIC3 NM_024557 11p15.4 79608.008.2 79608.8 F_at 1081 1410.001.1-B_at CRYAB NM_001885 11q22.3-q23.1 1410.001.1 1410.1 1082 7113.010.1-T_at TMPRSS2 NM_005656 21q22.3 7113.010.1 7113.10 1083 4781.014.2-B_at NFIB NM_005596 9p24.1 4781.014.2 4781.14 1084 2335.016.1-E_at FN1 NM_002047 2q34 2335.016.1 2335.16 1085 11065.003.1- UBE2C NM_007023 20q13.12 11065.003.1 11065.3 T_at 1086 3872.006.1-T_at KRT17 NM_000422 17q12-q21 3872.006.1 3872.6 1087 3084.005.1-F_at NRG1 NM_004517 8p12 3084.005.1 3084.5 1088 6285.003.1-T_at S100B NM_006272 21q22.3 6285.003.1 6285.3 1089 6876.016.2-F_at TAGLN NM_001001532 11q23.2 6876.016.2 6876.16 1090 8404.004.1-T_at SPARCL1 NM_004684 4q22.1 8404.004.1 8404.4 1091 54829.001.1- ASPN NM_017680 9q22 54829.001.1 54829.1 F_at 1092 8404.001.1-T_at SPARCL1 NM_004684 4q22.1 8404.001.1 8404.1 1093 9055.011.1-E_at PRC1 NM_003984 15q26.1 9055.011.1 9055.11 1094 6289.003.2-F_at SAA2 NM_030754 11p15.1-p14 6289.003.2 6289.3 1095 22974.007.1- TPX2 NM_012112 20q11.2 22974.007.1 22974.7 T_at 1096 59.023.2-T_at ACTA2 NM_001613 10q23.3 59.023.2 59.23 1097 7169.015.1-T_at TPM2 NM_003298 9p13.2-p13.1 7169.015.1 7169.15 1098 6289.002.1-F_at SAA2 NM_030754 11p15.1-p14 6289.002.1 6289.2 1099 4288.008.1-B_at MKI67 NM_002417 10q25-qter 4288.008.1 4288.8 1100 4781.007.1-B_at NFIB NM_005596 9p24.1 4781.007.1 4781.7 1101 6876.023.1-T_at TAGLN NM_001001533 11q23.2 6876.023.1 6876.23 1102 9055.017.1-F_at PRC1 NM_003985 15q26.1 9055.017.1 9055.17 1103 7170.018.2-D_at TPM3 NM_001043363 1q21.2 7170.018.2 7170.18 1104 4781.014.2-D_at NFIB NM_005596 9p24.1 4781.014.2 4781.14 1105 7170.025.1-T_at TPM3 NM_001043364 1q21.2 7170.025.1 7170.25 1106 7018.025.1-B_at TF NM_001063 3q22.1 7018.025.1 7018.25 1107 10253.003.1- SPRY2 NM_005842 13q31.1 10253.003.1 10253.3 T_at 1108 57447.039.1- NDRG2 NM_016327 14q11.2 57447.039.1 57447.39 D_at 1109 59.022.1-T_at ACTA2 NM_001613 10q23.3 59.022.1 59.22 1110 2982.015.1-F_at GUCY1A3 NM_000856 4q31.3-q33| 2982.015.1 2982.15 4q31.1-q31.2 1111 10124.004.2- ARL4A NM_001037166 7p21-p15.3 10124.004.2 10124.4 F_at 1112 6289.001.1-B_at SAA2 NM_030754 11p15.1-p14 6289.001.1 6289.1 1113 7091.005.1-F_at TLE4 NM_007005 9q21.31 7091.005.1 7091.5 1114 501.006.1-B_at ALDH7A1 NM_001182 5q31 501.006.1 501.6 1115 1410.001.1-C_at CRYAB NM_001885 11q22.3-q23.1 1410.001.1 1410.1 1116 57447.021.1- NDRG2 NM_016328 14q11.2 57447.021.1 57447.21 C_at 1117 244.012.1-B_at ANXA8L2 NM_001630 10q11.22 244.012.1 244.12 1118 7018.026.1-F_at TF NM_001063 3q22.1 7018.026.1 7018.26 1119 3872.018.1-T_at KRT17 NM_000422 17q12-q21 3872.018.1 3872.18 1120 10144.017.3- FAM13A1 NM_001015047 4q22.1 10144.017.3 10144.17 T_at 1121 11197.001.1- WIF1 NM_007191 12q14.3 11197.001.1 11197.1 F_at 1122 29127.007.1- RACGAP1 NM_013277 12q13.13 29127.007.1 29127.7 B_at 1123 10010.004.1- TANK NM_004181 2q24-q31 10010.004.1 10010.4 F_at 1124 81704.013.1- DOCK8 NM_203447 9p24.3 81704.013.1 81704.13 C_at 1125 4781.006.2-B_at NFIB NM_005596 9p24.1 4781.006.2 4781.6 1126 7373.003.1-F_at COL14A1 NM_021110 8q23 7373.003.1 7373.3 1127 8404.009.1-D_at SPARCL1 NM_004684 4q22.1 8404.009.1 8404.9 1128 23092.004.1- ARHGAP26 NM_015071 5q31 23092.004.1 23092.4 T_at 1129 2335.002.1-F_at FN1 NM_002048 2q34 2335.002.1 2335.2 1130 8404.031.1-F_at SPARCL1 NM_004684 4q22.1 8404.031.1 8404.31 1131 6304.006.2-T_at SATB1 NM_002971 3p23 6304.006.2 6304.6 1132 1410.008.1-E_at CRYAB NM_001885 11q22.3-q23.1 1410.008.1 1410.8 1133 9055.019.1-F_at PRC1 NM_003986 15q26.1 9055.019.1 9055.19 1134 1398.001.1-D_at CRK NM_000509 17p13.3 1398.001.1 1398.1 1135 57447.051.1- NDRG2 NM_016329 14q11.2 57447.051.1 57447.51 E_at 1136 339965.001.2-B FLJ25770 NM_001042784 4q21.1 339965.001.2 339965.1 1137 7113.001.1-C_at TMPRSS2 NM_005656 21q22.3 7113.001.1 7113.1 1138 4240.009.1-D_at MFGE8 NM_005928 15q25 4240.009.1 4240.9 1139 7153.002.4-B_at TOP2A NM_001067 17q21-q22 7153.002.4 7153.2 1140 7169.004.1-D_at TPM2 NM_003299 9p13.2-p13.1 7169.004.1 7169.4 1141 1410.001.1-D_at CRYAB NM_001885 11q22.3-q23.1 1410.001.1 1410.1 1142 59.015.2-B_at ACTA2 NM_001613 10q23.3 59.015.2 59.15 1143 4833.010.1-T_at NME4 NM_005009 16p13.3 4833.010.1 4833.10 1144 7169.022.1-B_at TPM2 NM_003300 9p13.2-p13.1 7169.022.1 7169.22 1145 11065.005.1- UBE2C NM_007024 20q13.12 11065.005.1 11065.5 T_at 1146 7170.018.2-T_at TPM3 NM_001043365 1q21.2 7170.018.2 7170.18 1147 79971.013.2- GPR177 NM_001002293 1p31.3 79971.013.2 79971.13 F_at 1148 152015.005.2-F ROPN1B NM_001012337 3q21.2 152015.005.2 152015.5 1149 4288.005.1-D_at MKI67 NM_002417 10q25-qter 4288.005.1 4288.5 1150 8404.002.1-T_at SPARCL1 NM_004684 4q22.1 8404.002.1 8404.2 1151 6441.004.1-E_at SFTPD NM_003019 10q22.2-q23.1 6441.004.1 6441.4 1152 6122.046.1-B_at RPL3 NM_000967 22q13 6122.046.1 6122.46 1153 115908.002.1-T CTHRC1 NM_138455 8q22.3 115908.002.1 115908.2 1154 9481.001.1-F_at SLC25A27 NM_004277 6p11.2-q12 9481.001.1 9481.1 1155 8404.008.1-T_at SPARCL1 NM_004684 4q22.1 8404.008.1 8404.8 1156 1410.007.1-D_at CRYAB NM_001885 11q22.3-q23.1 1410.007.1 1410.7 1157 8404.030.1-C_at SPARCL1 NM_004684 4q22.1 8404.030.1 8404.30 1158 57447.039.1- NDRG2 NM_016330 14q11.2 57447.039.1 57447.39 T_at 1159 4147.004.1-E_at MATN2 NM_002385 8q22 4147.004.1 4147.4 1160 2335.024.2-F_at FN1 NM_002049 2q34 2335.024.2 2335.24 1161 891.007.1-T_at CCNB1 NM_031966 5q12 891.007.1 891.7 1162 2335.002.1-T_at FN1 NM_002050 2q34 2335.002.1 2335.2 1163 8404.017.1-T_at SPARCL1 NM_004684 4q22.1 8404.017.1 8404.17 1164 57451.004.1- ODZ2 NM_001080428 5q34-q35.1 57451.004.1 57451.4 B_at 1165 8404.001.1-F_at SPARCL1 NM_004684 4q22.1 8404.001.1 8404.1 1166 8626.006.2-B_at TP63 NM_003722 3q28 8626.006.2 8626.6 1167 2335.025.1-T_at FN1 NM_002051 2q34 2335.025.1 2335.25 1168 6286.001.1-T_at S100P NM_005980 4p16 6286.001.1 6286.1 1169 10580.012.1- SORBS1 NM_001034954 10q23.3-q24.1 10580.012.1 10580.12 C_at 1170 23321.014.1- TRIM2 NM_015271 4q31.3 23321.014.1 23321.14 T_at 1171 2824.001.2-B_at GPM6B NM_001001994 Xp22.2 2824.001.2 2824.1 1172 29127.022.1- RACGAP1 NM_013277 12q13.13 29127.022.1 29127.22 T_at 1173 6289.003.1-F_at SAA2 NM_030754 11p15.1-p14 6289.003.1 6289.3 1174 7170.005.2-B_at TPM3 NM_001043366 1q21.2 7170.005.2 7170.5 1175 54443.011.1- ANLN NM_018685 7p15-p14 54443.011.1 54443.11 F_at 1176 29127.019.1- RACGAP1 NM_013277 12q13.13 29127.019.1 29127.19 T_at 1177 6288.004.1-T_at SAA1 NM_000333 11p15.1 6288.004.1 6288.4 1178 29997.008.1- GLTSCR2 NM_015710 19q13.3 29997.008.1 29997.8 C_at 1179 57447.039.1- NDRG2 NM_016331 14q11.2 57447.039.1 57447.39 B_at 1180 3872.007.1-B_at KRT17 NM_000422 17q12-q21 3872.007.1 3872.7 1181 57561.002.1- ARRDC3 NM_020801 5q14.3 57561.002.1 57561.2 T_at 1182 57451.002.3- ODZ2 NM_001080428 5q34-q35.1 57451.002.3 57451.2 B_at 1183 5213.024.1-B_at PFKM NM_000289 12q13.3 5213.024.1 5213.24 1184 2.005.1-T_at A2M NM_000014 12p13.3-p12.3 2.005.1 2.5 1185 11065.004.1- UBE2C NM_007025 20q13.12 11065.004.1 11065.4 C_at 1186 1410.006.1-C_at CRYAB NM_001885 11q22.3-q23.1 1410.006.1 1410.6 1187 6289.006.1-T_at SAA2 NM_030754 11p15.1-p14 6289.006.1 6289.6 1188 55366.001.1- LGR4 NM_018490 11p14-p13 55366.001.1 55366.1 T_at 1189 23284.007.1- LPHN3 NM_015236 4q13.1 23284.007.1 23284.7 F_at 1190 79971.009.1- GPR177 NM_001002294 1p31.3 79971.009.1 79971.9 T_at 1191 6288.004.1-E_at SAA1 NM_000334 11p15.1 6288.004.1 6288.4 1192 11065.004.1- UBE2C NM_007026 20q13.12 11065.004.1 11065.4 T_at 1193 51203.009.1- NUSAP1 NM_016362 15q15.1 51203.009.1 51203.9 T_at 1194 1410.010.1-E_at CRYAB NM_001885 11q22.3-q23.1 1410.010.1 1410.10 1195 57447.030.1- NDRG2 NM_016332 14q11.2 57447.030.1 57447.30 D_at 1196 1308.002.1-T_at COL17A1 NM_000507 10q24.3 1308.002.1 1308.2 1197 4288.007.1-C_at MKI67 NM_002417 10q25-qter 4288.007.1 4288.7 1198 244.011.1-T_at ANXA8L2 NM_001630 10q11.22 244.011.1 244.11 1199 94274.003.1- PPP1R14A NM_033256 19q13.1 94274.003.1 94274.3 B_at 1200 3178.003.1-E_at HNRNPA1 NM_002136 12q13.1 3178.003.1 3178.3 1201 7153.002.4-T_at TOP2A NM_001067 17q21-q22 7153.002.4 7153.2 1202 9055.012.1-D_at PRC1 NM_003987 15q26.1 9055.012.1 9055.12 1203 9232.001.1-E_at PTTG1 NM_004219 5q35.1 9232.001.1 9232.1 1204 79068.011.2- FTO NM_001080432 16q12.2 79068.011.2 79068.11 B_at 1205 120.005.2-F_at ADD3 NM_001122 10q24.2-q24.3 120.005.2 120.5 1206 7534.001.1-C_at YWHAZ NM_003406 8q23.1 7534.001.1 7534.1 1207 120.005.2-T_at ADD3 NM_001123 10q24.2-q24.3 120.005.2 120.5 1208 7373.003.3-C_at COL14A1 NM_021110 8q23 7373.003.3 7373.3 1209 57447.004.2- NDRG2 NM_016333 14q11.2 57447.004.2 57447.4 D_at 1210 2568.005.1-F_at GABRP NM_014211 5q33-q34 2568.005.1 2568.5 1211 1308.001.1-E_at COL17A1 NM_000508 10q24.3 1308.001.1 1308.1 1212 6876.020.1-F_at TAGLN NM_001001534 11q23.2 6876.020.1 6876.20 1213 79971.014.1- GPR177 NM_001002295 1p31.3 79971.014.1 79971.14 D_at 1214 5621.008.1-D_at PRNP NM_000312 20p13 5621.008.1 5621.8 1215 55732.003.2- C1orf112 NM_018186 1q24.2 55732.003.2 55732.3 T_at 1216 221120.006.1-D ALKBH3 NM_139178 11p11.2 221120.006.1 221120.6 1217 23266.008.1- LPHN2 NM_012302 1p31.1 23266.008.1 23266.8 T_at 1218 2335.045.1-F_at FN1 NM_002052 2q34 2335.045.1 2335.45 1219 7170.007.1-F_at TPM3 NM_001043367 1q21.2 7170.007.1 7170.7 1220 10461.002.1- MERTK NM_006343 2q14.1 10461.002.1 10461.2 B_at 1221 59.031.2-F_at ACTA2 NM_001613 10q23.3 59.031.2 59.31 1222 9055.010.1-T_at PRC1 NM_003988 15q26.1 9055.010.1 9055.10 1223 58499.005.2- ZNF462 NM_021224 9q31.2 58499.005.2 58499.5 F_at 1224 54443.006.2- ANLN NM_018685 7p15-p14 54443.006.2 54443.6 F_at 1225 59.016.1-B_at ACTA2 NM_001613 10q23.3 59.016.1 59.16 1226 4288.004.1-C_at MKI67 NM_002417 10q25-qter 4288.004.1 4288.4 1227 7170.014.1-C_at TPM3 NM_001043368 1q21.2 7170.014.1 7170.14 1228 7170.007.1-D_at TPM3 NM_001043369 1q21.2 7170.007.1 7170.7

TABLE 5 Table 5. Average profiles of the preferred 1,228 signature probe set on the 24 benign and 70 malignant tissues of the training set. NO Probeset_Id benign profile malignant profile 1 1756.022.2-C_at 7.77577583 3.59039694 2 1756.029.1-D_at 7.04295703 3.513387741 3 1756.026.1-C_at 6.95161337 3.464276589 4 1756.022.4-T_at 6.48188081 3.420868252 5 1756.011.1-B_at 6.86417826 3.496864254 6 1308.008.1-C_at 7.57956334 3.687873002 7 1756.022.3-F_at 6.51097796 3.58405119 8 3861.020.1-D_at 6.22316661 3.499798722 9 1756.011.1-F_at 6.46286419 3.439670248 10 4629.007.1-F_at 7.83187958 4.047826786 11 1756.022.4-B_at 5.66870747 3.376207029 12 1756.024.1-F_at 5.6343038 3.538881886 13 3861.019.1-T_at 6.68378293 3.662794206 14 1756.026.1-T_at 5.75006153 3.403683849 15 1756.022.1-B_at 5.5659674 3.347255374 16 3861.001.1-T_at 8.03618493 4.233009236 17 1308.008.1-T_at 7.11931893 3.582324909 18 4629.020.1-C_at 5.83439993 3.404790946 19 1756.027.1-T_at 5.61961823 3.38354471 20 3861.013.1-T_at 6.54371337 3.606451019 21 4629.020.1-F_at 8.29507715 4.572815098 22 3861.001.1-B_at 6.22211499 3.452593672 23 1756.022.4-F_at 5.86145739 3.406465282 24 1756.026.1-F_at 5.60288028 3.360497686 25 1756.022.2-T_at 5.58253289 3.54186397 26 1756.022.2-F_at 5.61962239 3.502994928 27 3861.022.1-B_at 7.02845041 3.87855387 28 3868.004.1-D_at 7.74158414 4.319798082 29 4629.015.1-C_at 7.25657837 3.723809766 30 6422.002.1-E_at 8.94850792 4.159424522 31 3861.001.1-D_at 6.09123229 3.432322015 32 1756.022.1-F_at 5.69246198 3.544494185 33 1308.003.1-T_at 7.94010542 4.370493824 34 3868.005.1-B_at 8.74334588 5.189519553 35 1308.007.1-F_at 6.53872712 4.045429995 36 1308.009.1-F_at 6.89532626 4.071167435 37 3861.007.1-E_at 6.32900696 3.492862508 38 4629.016.1-D_at 6.54432919 3.640775643 39 3084.007.1-F_at 5.24077491 3.36157297 40 3861.007.1-F_at 8.80010947 5.27987695 41 26289.003.1-E_at 5.86287574 3.533159027 42 1756.028.1-T_at 5.51782565 3.40968711 43 4629.021.1-E_at 5.66627575 3.423025757 44 4629.020.1-D_at 6.44086194 3.546901356 45 5764.001.1-F_at 8.69561376 4.488059326 46 3815.002.3-F_at 7.51289238 3.849064631 47 3852.020.1-T_at 6.42797621 4.732898695 48 4629.007.1-E_at 6.02756027 3.473012819 49 128553.003.1-F 5.53321089 3.635562107 50 26289.003.1-F_at 7.91558754 4.209493355 51 3815.002.2-F_at 7.57464628 4.354458317 52 1756.029.1-B_at 5.14699565 3.349809112 53 4629.005.1-E_at 7.84091036 4.284271836 54 4629.010.1-B_at 6.24893878 4.055036115 55 6422.001.1-T_at 7.16633034 3.787746012 56 5764.001.1-E_at 7.41150914 3.725088834 57 3861.008.1-F_at 7.02710456 4.066582177 58 1756.030.2-T_at 4.94195769 3.327396148 59 3084.009.1-B_at 5.68938525 3.45247142 60 26289.002.1-T_at 7.40948494 4.099092499 61 1756.022.5-B_at 5.43279988 3.481330797 62 4629.007.1-D_at 6.12853852 3.536108886 63 23336.001.1-C_at 6.64495461 3.668475185 64 1308.003.1-D_at 5.60928126 3.379520915 65 1756.022.3-T_at 5.52680369 3.62832307 66 3861.020.1-T_at 7.58427914 5.411375294 67 3861.022.1-C_at 5.51190841 3.385538085 68 3852.012.2-B_at 8.68398341 6.89513729 69 26289.012.1-E_at 7.90570335 4.172489159 70 23336.003.1-T_at 7.08201667 4.814503945 71 26289.007.1-B_at 7.72470925 4.152306769 72 84417.001.1-T_at 5.09011844 3.400475459 73 3861.018.1-D_at 5.42966542 3.382067375 74 3852.004.1-B_at 6.45366587 4.048382242 75 90865.006.1-B_at 6.73968166 3.990889311 76 4629.021.1-F_at 7.91177883 5.2531203 77 3861.018.1-T_at 6.93768003 4.389579877 78 1756.022.1-T_at 5.49427991 3.678236167 79 1264.003.1-B_at 6.59427618 3.644806029 80 26289.010.1-E_at 7.89895995 4.173752776 81 3861.001.1-F_at 8.22227254 5.365451942 82 1908.002.1-T_at 5.89142159 3.76026543 83 4629.007.1-C_at 5.95159281 3.449026103 84 1756.022.5-T_at 7.41985492 5.430396438 85 3815.002.4-B_at 6.82005827 3.837481838 86 1756.022.2-B_at 5.20019167 3.394669911 87 1756.027.1-B_at 4.8537932 3.389107204 88 3852.008.2-T_at 6.48445207 3.985807972 89 6422.001.1-E_at 7.27907161 3.874506745 90 3861.022.1-F_at 6.81336417 5.057032572 91 4915.011.1-D_at 5.90431076 3.64199141 92 5288.001.1-F_at 5.44594693 3.485884155 93 3861.007.1-T_at 7.95368914 5.49032736 94 3852.006.1-C_at 6.13678531 3.559093796 95 9413.003.1-T_at 5.34538697 3.552156816 96 3861.020.1-C_at 5.55692471 3.41004352 97 1308.008.1-D_at 5.59542139 3.406938539 98 23336.001.1-T_at 6.50954711 4.440969009 99 3815.001.1-F_at 7.00089122 3.951400817 100 1756.022.5-F_at 6.87448959 4.663598998 101 79937.001.1-T_at 6.15393538 4.110481521 102 4915.012.1-E_at 8.0872096 4.146795298 103 3861.022.1-T_at 6.45943061 3.91885164 104 26289.005.1-T_at 6.42663922 4.148293882 105 3815.002.3-B_at 5.54627639 3.429691278 106 4311.009.1-F_at 7.16081204 4.100265304 107 26289.006.1-T_at 8.56062669 4.815103599 108 5288.003.1-F_at 5.50819433 3.507713463 109 4629.020.1-B_at 5.84433404 3.602970173 110 26289.007.1-D_at 8.97225664 4.739722032 111 3815.002.1-B_at 6.95057351 3.834713723 112 26289.004.1-T_at 6.34773713 4.19513007 113 79192.002.2-T_at 6.05826364 3.842242343 114 4638.006.1-D_at 7.26387248 4.23337548 115 3084.008.1-F_at 4.91747714 3.337620462 116 4311.001.2-T_at 7.0894017 4.083336035 117 3815.002.1-D_at 5.62489378 3.413633401 118 4629.020.1-T_at 6.54528254 4.292670552 119 1756.026.1-B_at 5.04408715 3.401481888 120 3852.022.1-T_at 6.17920917 3.949400375 121 4629.015.1-D_at 6.8794921 4.903440037 122 26289.007.1-C_at 7.11737708 3.991072006 123 23194.003.1-C_at 6.62756369 4.216361434 124 3815.002.1-F_at 5.96350065 3.577775017 125 26289.007.1-T_at 9.05284176 5.053614074 126 65983.009.1-B_at 4.92316734 3.543080498 127 23336.001.1-F_at 6.76043292 4.496928377 128 1410.007.2-B_at 6.13154201 3.800315965 129 1756.029.1-F_at 4.74778319 3.336087634 130 7373.003.6-C_at 6.42568489 3.893070602 131 10010.002.1-E_at 4.95595545 3.398356655 132 59.026.1-B_at 5.82098007 3.829661839 133 4915.011.1-F_at 6.93603667 3.88986704 134 3872.007.1-D_at 6.20605492 3.672782211 135 26289.002.1-D_at 4.95771354 3.437272763 136 84668.002.1-C_at 7.73745334 4.885593169 137 1756.002.2-T_at 7.42432799 4.334919851 138 57447.033.1-C_at 6.98508503 4.791930475 139 26289.009.1-E_at 8.95673913 4.746268267 140 3872.006.1-F_at 8.33069501 5.239623762 141 3861.022.1-D_at 4.91710968 3.325488578 142 3861.020.1-B_at 5.32314912 3.412709023 143 667.021.1-B_at 6.18631919 3.841433137 144 57447.027.1-F_at 7.08539045 4.241139039 145 56477.001.1-D_at 6.55969728 3.814097685 146 26289.008.1-F_at 8.97978495 4.925626071 147 59.024.2-D_at 7.22299753 4.423928704 148 4629.005.1-T_at 8.60305039 5.554148468 149 3815.002.1-T_at 8.34708459 4.557379602 150 23336.001.1-B_at 7.9283908 5.377785469 151 3084.004.2-F_at 4.90868361 3.371411318 152 27122.014.2-T_at 5.66296874 3.671915992 153 26289.008.1-C_at 6.19905784 3.792605417 154 286887.003.2-B 6.65960082 4.217906735 155 4629.005.1-F_at 7.92220509 5.827308726 156 3872.009.1-T_at 8.11749997 4.97186016 157 59.014.2-D_at 7.2803688 4.475411666 158 403340.001.2-B 6.5225278 3.953645308 159 3852.014.1-F_at 6.65504418 4.502352655 160 27122.001.1-T_at 6.70494956 4.219728495 161 3815.002.3-T_at 5.79983719 3.546807083 162 3852.008.1-E_at 7.70698375 4.778195426 163 26289.012.1-T_at 6.44372459 3.808594574 164 26289.007.1-F_at 6.33764826 3.835752254 165 4638.006.1-T_at 7.48416583 4.880628209 166 8626.005.1-B_at 6.0506832 3.689171001 167 3815.002.4-T_at 7.18867318 3.947318855 168 84668.004.1-F_at 6.36068084 4.024117755 169 3872.007.1-F_at 8.15990919 5.039544664 170 57447.031.1-E_at 6.98413461 4.847264949 171 3084.012.3-T_at 5.1724186 3.372130258 172 3852.005.1-T_at 6.15177089 3.953202014 173 84417.001.2-T_at 4.88905487 3.400666252 174 3866.003.2-T_at 7.33197079 4.76008241 175 3866.008.1-C_at 6.52361561 3.762190903 176 3852.009.1-F_at 7.29388376 4.138971389 177 59.015.1-B_at 5.98286286 3.912382525 178 79937.002.1-F_at 4.55998542 3.353847089 179 7153.002.6-F_at 5.25845229 8.105836861 180 4281.010.1-B_at 5.89302118 3.740600544 181 59.008.1-B_at 5.76124199 3.852970764 182 1264.007.1-T_at 5.63801742 3.838276262 183 3868.004.1-T_at 5.66410876 3.79017218 184 3084.002.1-F_at 4.98674566 3.360938629 185 5137.004.2-T_at 4.64089266 3.34890403 186 4629.022.1-T_at 4.75765246 3.480568786 187 4915.011.1-T_at 6.94354411 3.915112838 188 3852.013.1-E_at 6.01894366 3.617314683 189 59.012.2-T_at 8.08522667 5.172148648 190 59.015.1-F_at 6.50494881 4.765128611 191 4638.006.2-T_at 7.26086954 4.714147988 192 23336.002.1-B_at 5.95183375 3.957277561 193 3868.005.1-C_at 8.63446621 7.297975458 194 3866.011.2-D_at 8.77838405 4.522564109 195 56477.001.1-T_at 8.14939865 5.06922736 196 3815.001.1-T_at 6.03901568 3.756819456 197 4311.001.1-T_at 7.11420453 4.238075405 198 1264.003.1-D_at 5.1912565 3.354675255 199 59.031.1-T_at 7.4628458 4.949828067 200 57447.030.1-B_at 6.45843286 3.891549539 201 1410.003.2-B_at 6.05784067 3.779422009 202 3866.009.2-D_at 8.80361998 4.576378265 203 59.026.1-T_at 7.29639751 4.650053313 204 440421.001.1-T 9.24293713 6.596812139 205 1756.022.4-D_at 5.07768477 3.476314006 206 65983.009.1-D_at 6.39596028 4.086911291 207 57447.041.1-T_at 6.95593663 4.149259947 208 3872.010.2-D_at 8.56203536 5.425416269 209 4629.006.2-T_at 8.90925918 6.221775982 210 3861.018.1-F_at 6.8430596 5.185870988 211 3815.002.2-T_at 5.28733127 3.421518659 212 3866.012.2-D_at 8.67083494 4.478603969 213 57447.021.1-D_at 6.98727375 4.930757851 214 59.015.1-T_at 7.34935329 4.513251269 215 8626.007.1-F_at 7.17503293 5.028534466 216 5288.001.1-B_at 5.02652959 3.42608729 217 72.001.1-B_at 6.05804544 3.853258443 218 3866.006.2-D_at 8.65913916 4.490509023 219 3852.004.1-T_at 6.78881411 4.012650025 220 4629.016.1-F_at 5.16326314 3.700432446 221 4629.007.1-T_at 5.80150326 4.040994731 222 65983.008.1-T_at 6.32502917 4.219582217 223 65983.013.1-F_at 5.56252368 3.731459395 224 3084.004.1-F_at 4.93700193 3.399738343 225 27122.007.1-F_at 6.83642294 4.356100082 226 3866.008.1-D_at 8.70576582 4.517001787 227 26289.009.1-T_at 8.23631259 5.882347434 228 59.009.1-B_at 7.1080566 4.810790662 229 4629.010.1-D_at 5.14795762 3.377019173 230 59.023.1-B_at 5.9667058 4.241472412 231 26289.002.1-F_at 6.02532667 4.093116116 232 1908.001.1-T_at 5.67746805 3.733518249 233 4915.008.1-F_at 7.26142834 4.642285716 234 23336.002.1-T_at 6.49776495 4.343732056 235 3861.008.1-C_at 5.95153563 3.602851161 236 3861.008.1-D_at 5.29062466 3.396003998 237 57447.035.1-E_at 6.91652713 4.662107171 238 3861.018.1-C_at 5.20378802 3.40238733 239 1308.003.1-B_at 6.04491667 4.20754377 240 667.022.1-B_at 9.21855078 6.264675763 241 3866.011.2-T_at 9.26272502 4.964885149 242 2115.001.2-F_at 4.89563967 3.419126266 243 3866.011.2-B_at 8.90774202 5.955221725 244 26289.010.1-T_at 6.53182588 3.913556066 245 27303.004.1-E_at 5.37295265 3.543582523 246 59.003.1-B_at 7.93270751 4.980983024 247 4311.009.1-C_at 5.83645359 3.593262545 248 7373.003.6-B_at 5.10650551 3.591717587 249 65983.004.1-T_at 6.08803336 4.309048954 250 26289.013.1-D_at 6.4702967 4.168098993 251 3866.004.1-F_at 8.69085999 5.161823428 252 56477.001.1-F_at 6.84530786 4.144567561 253 57447.037.1-F_at 6.50794623 4.008371243 254 59.022.2-T_at 8.05648541 5.423260634 255 147495.008.1-F 4.79759981 3.504777229 256 2.018.1-T_at 6.94869173 4.521707124 257 140807.003.1-E 7.78013704 4.939516908 258 65983.009.1-T_at 5.82469201 4.038349093 259 84668.002.1-F_at 6.10679619 3.911726506 260 3872.007.1-C_at 6.89188543 4.236245481 261 2115.008.1-T_at 4.99544075 3.646690809 262 65983.004.2-T_at 6.08050374 4.312433521 263 57447.034.1-D_at 6.936035 4.801981821 264 3866.001.1-F_at 9.09052167 5.099093334 265 3866.008.1-T_at 9.07318081 5.048805174 266 1959.003.1-C_at 5.09323093 3.511681612 267 389432.002.1-T 5.08376017 3.428817257 268 389734.001.1-T 5.43078503 3.868151914 269 3855.001.2-D_at 7.00167453 4.478486691 270 3866.003.1-T_at 7.28560994 4.919439752 271 3084.006.1-F_at 4.88762029 3.435292071 272 4915.008.1-B_at 9.33812372 6.600441272 273 2115.011.1-T_at 4.96772945 3.573388451 274 65983.005.1-T_at 5.18666491 3.68451349 275 84668.004.1-T_at 5.6127121 3.643748216 276 59.015.2-T_at 7.37091506 4.589962999 277 2119.006.1-B_at 5.29804773 3.689885023 278 4638.006.2-F_at 6.94711133 4.982563544 279 3866.007.2-D_at 8.65600661 4.653097355 280 59.014.1-T_at 6.68646455 4.640934588 281 3866.001.2-F_at 8.99732872 5.069416275 282 1308.008.1-B_at 5.17775427 3.436187546 283 59.026.1-F_at 6.20953542 4.590760008 284 3866.013.1-T_at 8.10955622 4.736748894 285 1264.007.1-F_at 4.75311015 3.431422638 286 3866.007.2-T_at 9.11439411 5.094569305 287 27122.013.1-T_at 6.62548583 4.301605936 288 27122.006.2-T_at 6.55351463 4.265429835 289 3866.006.2-T_at 9.06546704 5.104948803 290 3866.009.2-T_at 9.95142456 5.435454431 291 4240.004.1-D_at 6.56591292 3.971193091 292 3866.010.1-C_at 9.93993743 5.314895513 293 3866.009.2-B_at 8.95840788 6.023022151 294 3866.009.1-T_at 9.94526994 5.403869315 295 4629.006.1-T_at 8.84832501 6.182536282 296 7018.029.1-B_at 7.60030878 4.306073488 297 1410.002.2-B_at 5.81431314 3.745409488 298 3866.012.1-T_at 9.90206544 5.308091577 299 59.034.2-D_at 7.86477089 5.080775226 300 27122.019.1-F_at 6.89881084 4.480037843 301 5156.001.1-T_at 4.81097854 3.473046125 302 389734.001.2-T 5.40328573 3.837281942 303 27122.014.1-T_at 5.51451528 3.660985743 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4281.012.2-T_at 5.18559903 3.709369654 956 2335.013.1-B_at 4.24843254 6.768210889 957 79627.003.1-B_at 5.80046587 4.283731062 958 2982.014.1-T_at 6.70490207 4.400137878 959 2335.053.1-T_at 5.80672371 8.072794315 960 667.001.1-F_at 5.91836585 4.436185766 961 8404.030.1-B_at 8.7803817 6.762729417 962 2335.025.1-C_at 5.89016354 8.340545982 963 140885.010.3-D 5.64716726 3.935175019 964 55366.001.2-F_at 6.45584577 4.52968697 965 7169.015.1-D_at 9.10850076 7.746283286 966 57447.002.1-B_at 10.5154174 8.85406099 967 22974.008.1-T_at 4.68631855 6.537183038 968 6876.011.1-C_at 6.44837046 4.645016388 969 4281.008.2-D_at 5.85946061 3.878305283 970 59.008.1-T_at 8.48935505 6.63847471 971 23266.008.1-F_at 7.18072955 5.133107519 972 2568.003.2-T_at 5.85722739 4.051173411 973 5311.003.1-T_at 5.37168206 4.077343368 974 6304.011.1-T_at 5.92190291 4.37727733 975 3861.008.1-B_at 7.42551236 5.399716053 976 7018.013.1-B_at 5.26119189 3.69876029 977 8404.005.1-F_at 8.58438422 6.423269422 978 7170.027.1-C_at 9.03620668 9.824923692 979 8404.023.1-C_at 6.96271536 4.627460556 980 7373.007.1-C_at 5.21901652 3.512769797 981 1410.009.1-T_at 8.07507455 5.204140322 982 79745.004.3-D_at 5.57669121 4.147896702 983 24137.004.1-T_at 3.54526583 5.143662611 984 6241.013.1-B_at 5.32142819 7.577868116 985 1410.001.1-T_at 8.89756795 5.783554496 986 4781.015.2-B_at 7.82251501 5.588763483 987 72.002.1-T_at 5.49901408 3.657567415 988 4833.004.1-D_at 7.72478747 8.933008875 989 57447.024.1-D_at 8.39121333 5.734774748 990 2982.013.2-T_at 6.69829498 4.788664846 991 79971.012.1-T_at 7.86816422 5.097596928 992 8404.028.3-C_at 8.43509005 5.660339589 993 4638.011.1-E_at 4.54149983 3.401814228 994 7169.004.1-C_at 9.93319291 8.292756224 995 4288.004.1-F_at 5.48379306 7.569481427 996 59.012.2-C_at 7.35490878 6.158197444 997 301.008.1-B_at 7.75881704 5.561554031 998 4281.012.1-T_at 5.22990892 3.775893084 999 2335.016.1-F_at 5.72062946 8.271881228 1000 259266.003.1-C 3.74524657 5.64429601 1001 9055.020.1-T_at 4.54642664 6.710996898 1002 7091.016.1-T_at 6.32037409 4.628367394 1003 59.023.1-T_at 6.98702578 5.652733648 1004 57162.010.1-B_at 5.51558535 4.297033118 1005 4781.002.2-D_at 4.69751141 3.532094277 1006 6122.037.1-T_at 10.367148 9.581841169 1007 4240.015.1-B_at 5.58448718 3.769441906 1008 59.034.1-T_at 7.30028333 5.815069711 1009 8404.004.2-D_at 6.59680571 4.480908858 1010 9413.001.2-T_at 5.83173699 4.199417075 1011 2.005.1-F_at 9.23135004 7.463118008 1012 6304.002.1-T_at 6.22980998 4.691222262 1013 3852.005.1-C_at 5.1815999 3.540371293 1014 7170.027.1-B_at 8.61016621 9.330841255 1015 301.013.1-T_at 7.9831001 5.822883877 1016 6304.012.1-F_at 5.99863704 4.356895672 1017 57447.051.2-T_at 7.96085286 6.017184644 1018 11065.005.1-C_at 3.70869314 5.527276202 1019 6422.002.1-F_at 5.79053376 4.58677324 1020 6241.013.1-F_at 4.36486456 6.707728465 1021 2335.032.1-T_at 6.09077284 8.189655849 1022 11065.005.2-T_at 4.44502121 6.241724709 1023 2335.028.1-D_at 4.37811935 7.181272915 1024 29997.016.1-F_at 7.01231968 5.364391961 1025 7018.014.1-T_at 5.84447021 3.853791495 1026 1410.011.1-E_at 10.4572153 7.631013667 1027 7170.040.1-E_at 9.04381331 9.788601589 1028 6289.002.2-F_at 7.95331589 5.409835249 1029 7373.003.4-C_at 5.37900799 3.668049298 1030 7170.041.1-E_at 9.0780429 9.837001991 1031 128553.003.1-B 4.33787983 3.383127715 1032 4094.002.1-D_at 5.80489701 4.110942964 1033 7113.011.1-T_at 5.03380702 3.77489186 1034 7170.002.1-C_at 10.3310325 11.10058024 1035 8404.017.2-T_at 7.65991671 5.307045406 1036 59.029.1-T_at 6.00974416 4.740356024 1037 29089.001.1-T_at 4.60079781 6.714422405 1038 358.012.1-T_at 7.75384082 5.172139857 1039 9134.001.1-B_at 3.63113188 5.472113919 1040 2335.013.1-C_at 6.22416658 8.858188139 1041 1410.010.1-T_at 8.00194091 5.107287395 1042 2327.003.4-F_at 5.3147747 3.687201869 1043 59.042.1-T_at 8.33740211 6.337284559 1044 6304.007.2-T_at 6.10850875 4.532546697 1045 8404.031.1-B_at 7.42216219 5.19861614 1046 6289.001.1-F_at 8.9307375 6.034635624 1047 1410.006.1-T_at 9.12745661 6.076865916 1048 80034.004.1-T_at 4.30047326 3.355594342 1049 1410.008.1-T_at 7.99198784 5.116495458 1050 57447.051.2-D_at 6.09844409 4.536325155 1051 7170.016.3-B_at 8.29403671 9.288724852 1052 4240.001.1-C_at 9.00972003 7.16992054 1053 6288.001.1-T_at 8.96603543 6.273903027 1054 7018.014.1-C_at 5.99538964 3.822846066 1055 8404.020.1-T_at 7.54635493 5.312082632 1056 6289.001.2-F_at 8.8100063 5.866140365 1057 6876.011.1-F_at 6.08933324 4.374504349 1058 8404.031.1-C_at 6.08486742 4.373738904 1059 57447.010.1-T_at 8.82775044 6.339588309 1060 1410.007.2-C_at 8.33758962 5.131217413 1061 59.012.2-B_at 6.35775616 4.443173526 1062 3459.005.1-T_at 5.80207334 4.471777329 1063 301.013.1-C_at 4.76677119 3.59309712 1064 83539.001.1-D_at 5.41027098 3.741417748 1065 6288.004.1-F_at 7.89445249 5.613330538 1066 4781.016.1-E_at 6.59597542 4.602150459 1067 29997.012.1-E_at 8.53873537 7.295932688 1068 57447.021.1-T_at 6.81768585 5.034847695 1069 3426.002.1-C_at 5.23704842 3.641068359 1070 53829.001.2-T_at 5.15275541 3.943598064 1071 2115.001.2-B_at 4.85542703 3.530125932 1072 10051.008.1-T_at 4.4316929 5.920843577 1073 1033.002.1-T_at 3.63139162 5.34811339 1074 2335.005.1-D_at 3.91739921 6.295453643 1075 7113.009.1-T_at 5.43609158 3.994720867 1076 3866.002.1-B_at 9.19732873 6.293031612 1077 140885.014.1-D 7.59348333 5.605094004 1078 7168.003.1-T_at 5.64472419 4.457129076 1079 79608.001.1-T_at 5.30303748 3.935571553 1080 79608.008.2-F_at 6.74835004 4.557558664 1081 1410.001.1-B_at 6.75241131 4.22870793 1082 7113.010.1-T_at 5.85442041 4.280294556 1083 4781.014.2-B_at 7.86598754 5.705821081 1084 2335.016.1-E_at 4.77399968 7.375547826 1085 11065.003.1-T_at 4.37783851 6.306175214 1086 3872.006.1-T_at 7.85482665 6.124969921 1087 3084.005.1-F_at 4.51722715 3.439893991 1088 6285.003.1-T_at 6.40683627 4.093334173 1089 6876.016.2-F_at 6.53765126 5.03041211 1090 8404.004.1-T_at 7.29426573 5.24109976 1091 54829.001.1-F_at 4.55095384 7.099570517 1092 8404.001.1-T_at 8.00106035 5.742296291 1093 9055.011.1-E_at 5.20354473 7.152510552 1094 6289.003.2-F_at 7.95780418 5.56331609 1095 22974.007.1-T_at 4.55846251 6.477981817 1096 59.023.2-T_at 6.91216911 5.63439702 1097 7169.015.1-T_at 10.1958997 8.61185317 1098 6289.002.1-F_at 7.95223459 5.506509999 1099 4288.008.1-B_at 4.4490631 6.277435237 1100 4781.007.1-B_at 6.06074416 4.463013886 1101 6876.023.1-T_at 5.30318153 3.837265148 1102 9055.017.1-F_at 4.93875917 6.675610123 1103 7170.018.2-D_at 8.97464252 9.731315695 1104 4781.014.2-D_at 6.62173963 4.59382551 1105 7170.025.1-T_at 10.1528395 10.84778358 1106 7018.025.1-B_at 5.85576515 3.729848132 1107 10253.003.1-T_at 5.21328569 3.796731651 1108 57447.039.1-D_at 6.20353459 4.650979725 1109 59.022.1-T_at 5.01607936 3.66486644 1110 2982.015.1-F_at 6.52910873 4.398315488 1111 10124.004.2-F_at 5.65171957 4.395524581 1112 6289.001.1-B_at 8.84060005 6.026432745 1113 7091.005.1-F_at 6.22924785 4.644117845 1114 501.006.1-B_at 5.49535249 3.832258169 1115 1410.001.1-C_at 8.37978611 5.283357954 1116 57447.021.1-C_at 6.64989625 4.516711936 1117 244.012.1-B_at 4.57455863 3.452384416 1118 7018.026.1-F_at 7.02591455 4.884695118 1119 3872.018.1-T_at 5.9287371 4.536856978 1120 10144.017.3-T_at 5.24556385 3.811639459 1121 11197.001.1-F_at 5.1313114 3.685307479 1122 29127.007.1-B_at 3.92146605 5.671967353 1123 10010.004.1-F_at 6.85011832 5.471009514 1124 81704.013.1-C_at 7.00929626 5.228254202 1125 4781.006.2-B_at 7.95071123 5.849829769 1126 7373.003.1-F_at 4.96962295 3.466223281 1127 8404.009.1-D_at 7.25304506 5.54375843 1128 23092.004.1-T_at 5.63034915 4.135821153 1129 2335.002.1-F_at 4.95716635 7.470035933 1130 8404.031.1-F_at 8.49473661 6.266230481 1131 6304.006.2-T_at 6.19437915 4.664814203 1132 1410.008.1-E_at 8.35323964 5.23093246 1133 9055.019.1-F_at 5.08438207 6.749313988 1134 1398.001.1-D_at 6.62952 5.474846977 1135 57447.051.1-E_at 7.64975415 6.754949154 1136 339965.001.2-B 6.09281787 4.427445717 1137 7113.001.1-C_at 6.49441996 4.364555738 1138 4240.009.1-D_at 6.92405991 4.992040248 1139 7153.002.4-B_at 3.9192437 5.943978275 1140 7169.004.1-D_at 10.5243791 9.455104283 1141 1410.001.1-D_at 10.4537888 7.669238725 1142 59.015.2-B_at 4.65235051 3.439217599 1143 4833.010.1-T_at 7.67064462 8.499214874 1144 7169.022.1-B_at 8.88810535 7.392553599 1145 11065.005.1-T_at 4.40063594 6.264196367 1146 7170.018.2-T_at 9.1005517 9.929531193 1147 79971.013.2-F_at 7.81954831 5.197831093 1148 152015.005.2-F 5.50228015 3.631181096 1149 4288.005.1-D_at 3.58855622 5.41357555 1150 8404.002.1-T_at 7.82572709 5.654573319 1151 6441.004.1-E_at 7.06431123 5.1604289 1152 6122.046.1-B_at 10.4919703 9.7185156 1153 115908.002.1-T 3.8854167 5.716319219 1154 9481.001.1-F_at 4.56745873 3.48672793 1155 8404.008.1-T_at 7.67594705 5.231619593 1156 1410.007.1-D_at 8.38485465 5.254780902 1157 8404.030.1-C_at 8.36615125 6.003710685 1158 57447.039.1-T_at 6.16284998 4.598519131 1159 4147.004.1-E_at 6.5996408 4.306043014 1160 2335.024.2-F_at 4.14778676 6.724104869 1161 891.007.1-T_at 4.37836908 6.277454073 1162 2335.002.1-T_at 3.69677239 5.842235509 1163 8404.017.1-T_at 7.62129329 5.344108953 1164 57451.004.1-B_at 4.98513349 3.645263861 1165 8404.001.1-F_at 7.80115205 5.644594488 1166 8626.006.2-B_at 4.99013916 3.634011318 1167 2335.025.1-T_at 5.20342277 7.312790967 1168 6286.001.1-T_at 4.37066146 7.627611404 1169 10580.012.1-C_at 5.72236701 4.332788093 1170 23321.014.1-T_at 4.77278608 3.653834143 1171 2824.001.2-B_at 6.86512458 5.132614728 1172 29127.022.1-T_at 4.01626993 5.699644246 1173 6289.003.1-F_at 8.04884622 5.558117392 1174 7170.005.2-B_at 7.21902208 8.187290968 1175 54443.011.1-F_at 3.90847075 5.715840566 1176 29127.019.1-T_at 4.45515346 6.238930793 1177 6288.004.1-T_at 8.9163962 6.203405757 1178 29997.008.1-C_at 8.54806753 7.280192975 1179 57447.039.1-B_at 8.64953038 6.241324868 1180 3872.007.1-B_at 5.78319757 3.824950968 1181 57561.002.1-T_at 7.04642246 5.352091902 1182 57451.002.3-B_at 4.71308984 3.460721722 1183 5213.024.1-B_at 5.69666791 4.585191172 1184 2.005.1-T_at 9.54067496 7.938923018 1185 11065.004.1-C_at 3.58696224 5.482200678 1186 1410.006.1-C_at 8.38947588 5.204282844 1187 6289.006.1-T_at 6.36227497 4.331717996 1188 55366.001.1-T_at 5.81899126 4.357905799 1189 23284.007.1-F_at 5.22440061 3.837622352 1190 79971.009.1-T_at 7.81567707 5.261440799 1191 6288.004.1-E_at 6.55709998 4.810646704 1192 11065.004.1-T_at 4.59241158 6.359329521 1193 51203.009.1-T_at 4.74450869 6.362980434 1194 1410.010.1-E_at 8.32156036 5.167245484 1195 57447.030.1-D_at 7.16110591 5.926932144 1196 1308.002.1-T_at 4.50117394 3.487272397 1197 4288.007.1-C_at 4.97101233 7.189192841 1198 244.011.1-T_at 5.29003948 3.948200539 1199 94274.003.1-B_at 4.42148503 3.46060704 1200 3178.003.1-E_at 6.30358046 5.181900836 1201 7153.002.4-T_at 4.03542364 6.008249752 1202 9055.012.1-D_at 4.02757905 6.120371884 1203 9232.001.1-E_at 5.22181281 7.208579638 1204 79068.011.2-B_at 6.64417255 5.308326918 1205 120.005.2-F_at 9.06074824 6.73592483 1206 7534.001.1-C_at 8.71480548 9.492140995 1207 120.005.2-T_at 8.73626834 6.165418999 1208 7373.003.3-C_at 4.85399243 3.462673564 1209 57447.004.2-D_at 6.16627621 4.604091159 1210 2568.005.1-F_at 4.73444224 3.560755491 1211 1308.001.1-E_at 4.41347272 3.418435324 1212 6876.020.1-F_at 6.2728158 4.761356719 1213 79971.014.1-D_at 6.31129325 4.294251993 1214 5621.008.1-D_at 5.98900704 4.179299085 1215 55732.003.2-T_at 3.81867845 5.173615902 1216 221120.006.1-D 8.08525795 7.079961293 1217 23266.008.1-T_at 6.70366212 4.807135334 1218 2335.045.1-F_at 4.39135516 6.494344728 1219 7170.007.1-F_at 7.64167879 8.466704716 1220 10461.002.1-B_at 4.77990896 3.622574749 1221 59.031.2-F_at 5.912075 4.730239133 1222 9055.010.1-T_at 4.95064392 6.677393383 1223 58499.005.2-F_at 5.8908337 4.132220814 1224 54443.006.2-F_at 3.53549616 5.526168717 1225 59.016.1-B_at 5.96979167 4.589590519 1226 4288.004.1-C_at 4.97220803 6.791619005 1227 7170.014.1-C_at 10.3731633 11.0837507 1228 7170.007.1-D_at 10.3462783 11.09055128

EXAMPLE III Molecular Prediction for Breast Cancer Diagnosis: Validation Set

A validation set was carried-out that included overall 71 samples. Of these, 21 and 50 were benign lesions and breast cancer respectively. Using this dataset, the inventors assessed the performances of the 1228 signature probes to predict for breast cancer as opposed to benign lesions. Overall 68 out of 71 samples were accurately classified (96%). Sensitivity and specificity of the tests were 96% (95% CI: 90.5-100) and 95% (95% CI: 86.1-100). The correlation of each specimen with the malignant and benign profile is reported in FIG. 6. Of the three misclassified specimen, one corresponded to a benign tumor (inflammatory granulomatosis) classified as malignant, and two were malignant tumors classified as benign by molecular predictor. The inventors then evaluated the add-value of molecular predictor to cytological exam, and to a model that included classification of American College of Radiology (ACR) and age. Cytological exam failed to provide a definitive diagnosis in 5 out of 71 patients. Four out of these 5 patients were accurately classified by the molecular predictor. The proportion of explained variation (PEV) by Clinical model (age and ACR) was 75%+−8%, while the PEV by molecular predictor was 81% (+/−10%). When clinical model and molecular predictor were combined, the PEV was 87% (+/−7%), suggesting that molecular predictor presented an add-value of 12% (+/−7%) to the clinical model. Using the top 50 polynucleotide probe sets: 1 out of 21 samples from patients with benign status were misclassified and 8 out of 50 samples from patients with malignant status. Using the top 100 polynucleotide probe sets: 1 out of 21 samples from patients with benign status were misclassified and 7 out of 50 samples from patients with malignant status. Using the top 150 polynucleotide probe sets: 1 out of 21 samples from patients with benign status were misclassified and 10 out of 50 samples from patients with malignant status. Using the top 200 polynucleotide probe sets: 1 out of 21 samples from patients with benign status were misclassified and 7 out of 50 samples from patients with malignant status. These data demonstrate that top probe set, even if some misclassifications occur, gives a good prognosis for a breast tumor. Moreover, the use of the 1228, or 1640, polynucleotide probe sets according to the invention allows, without ambiguity, and misclassification, to determine if a breast tumor is benign or malignant.

DISCUSSION

In the present study, the inventors have reported the exonic portrait of breast malignancy. The analysis of differential exonic events between malignant and benign lesions provides a complete picture of genomic anomalies associated with breast malignancy. The present study reveals a high level of genomic dysregulation between malignant and benign breast lesions. The inventors found out that 56652 out of 703680 evidenced probes (8%) were different among the two conditions. When the analysis focused on gene expression level (geo mean of probe sets), 3733 out of 20649 genes (7%) were differentially expressed between malignant and benign lesions. Analysis of gene expression levels revealed overexpression of candidate genes for further investigations. Pituitary Tumor Transforming 1 (PTTG1) has been previously reported to be overexpressed in pituitary tumors, thyroid cancer, colon cancer and glioma and to mediate malignant transformation (Vlotides G, Eigler T, Melmed S. Pituitary tumor-transforming gene: physiology and implications for tumorigenesis. Endocr Rev. 2007 April; 28(2):165-86). Neuroepithelial cell transforming gene 1 (NET1) is a guanine exchange factor that has been reported to mediate oncogenic transformation through activation of RhoA (Chan A M, Takai S, Yamada K, Miki T. Isolation of a novel oncogene, NET1, from neuroepithelioma cells by expression cDNA cloning. Oncogene. 1996 Mar. 21; 12(6):1259-66). Pathway analysis revealed that genes involved in spliceosome assemble were enriched in the malignant condition. Spliceosome mediates alternative splicing, a phenomenon involved in oncogenesis (Lønning PE, Knappskog S, Staalesen V, Chrisanthar R, Lillehaug J R. Breast cancer prognostication and prediction in the postgenomic era. Ann Oncol. 2007 August; 18(8):1293-306; Pajares M J, Ezponda T, Catena R, Calvo A, Pio R, Montuenga L M. Alternative splicing: an emerging topic in molecular and clinical oncology. Lancet Oncol. 2007 April; 8(4):349-57). Present study suggests that alternative splicing could significantly contribute to the molecular profile of breast cancer. Based on this consideration, the inventors further evaluated to what extent analyses at exonic level could provide additional information to the ones provided by analyses at gene expression level.

The inventors identified that 2675 exon-probes that did not belong to genes identified as differentially expressed, actually presented a significantly higher intensity in breast cancer. A high proportion of these 2675 exon-probes presented a significantly increased splice index in breast cancer as compared to benign tumors. These exon-probes were considered to present a higher difference of intensity between cancer and benign lesions, as compared to the one of their relative genes. Several of these exons are located within genes linked to cancer biology (casein kinase 1, delta (Gao Z H, Seeling J M, Hill V, Yochum A, Virshup D M. Casein kinase I phosphorylates and destabilizes the beta-catenin degradation complex. Proc Natl Acad Sci U S A. 2002 Feb. 5; 99(3):1182-), retinoblastoma binding protein 9 (Woitach J T, Zhang M, Niu C H, Thorgeirsson S S. A retinoblastoma-binding protein that affects cell-cycle control and confers transforming ability. Nat Genet. 1998 August; 19(4):371-4) and ERB2 interacting protein (Jaulin-Bastard F, Arsanto J P, Le Bivic A, Navarro C, Vély F, Saito H, Marchetto S, Hatzfeld M, Santoni M J, Birnbaum D, Borg J P. Interaction between Erbin and a Catenin related protein in epithelial cells. J Biol Chem. 2002 Jan. 25; 277(4):2869-75)). These data point out the limits of analyses at gene expression level to define the transcriptional profile of diseases, and suggest that analysis at exon level could capture biological information that is missed by analysis at gene expression level.

Based on the finding that breast cancer presents a widely different exonic profile as compared to benign tumors, the inventors evaluated whether this technology could be used for breast cancer diagnosis. Pathologic exam of tumor biopsy is the gold standard for cancer diagnosis. Nevertheless, such approach presents several limitations including the need for invasive procedures and, in some tumor types, misdiagnosis. In the present study, the inventors have shown that a large scale molecular analysis based on fine needle aspiration could allow breast cancer diagnosis. This finding opens new ways in the field of cancer diagnosis. Applied to breast cancer, it could allow a more effective post-screening pattern of care by increasing the metric performances of fine needle aspiration. Although biopsy is the current gold standard for breast cancer diagnosis, it is associated with both morbidity and treatment delays (Meunier M, Clough K. Fine needle aspiration cytology versus percutaneous biopsy of nonpalpable breast lesions. Eur J Radiol. 2002 April; 42(1):10-6). Fine needle aspiration is a safer and easier approach but is associated with a high rate of false negative results. In the present study, molecular diagnosis by a 1228-probe signature using FNA samples was associated with 100% accuracy in a training set and 96% accuracy in a validation set. Interestingly, molecular classifier provided accurate diagnosis in 4 out of 5 samples for which the cytological exam was not conclusive. Altogether, these data suggested that the 1228-probe signature could be a complementary tool to cytological exam for the breast cancer diagnosis. This tool could allow avoiding biopsies and unnecessary surgery in patients with benign lesions of the breast. At the opposite, for malignant lesions, this approach could speed-up the diagnosis and could allow decreasing time to surgery. The development of molecular assays for cancer diagnosis could be of special interest in other tumor types. As illustration, the benign nature of thyroid nodules is often difficult to be determined preoperatively, leading to unnecessary surgeries (Poller D N, Stelow E B, Yiangou C. Thyroid FNAC cytology: can we do it better? Cytopathology. 2008 February; 19(1):4-10). A molecular assay could dramatically decrease the need for surgery in this setting.

Overall, the present study reports the full description of exons differentially expressed between breast malignant and benign tumors. These data allowed the identification of candidate genes (PTTG1, NET1) for further functional validation in breast cancer. In addition it suggests that alternative splicing significantly contributes the molecular profile of breast cancer, leading to the identification of exons with a significantly higher splice index in cancer, but located within unchanged gene.

Finally, the splice array technology allowed the development of an exon signature for breast cancer diagnosis.

Lengthy table referenced here US20120283132A1-20121108-T00001 Please refer to the end of the specification for access instructions.

Lengthy table referenced here US20120283132A1-20121108-T00002 Please refer to the end of the specification for access instructions.

LENGTHY TABLES The patent application contains a lengthy table section. A copy of the table is available in electronic form from the USPTO web site (http://seqdata.uspto.gov/?pageRequest=docDetail&DocID=US20120283132A1). An electronic copy of the table will also be available from the USPTO upon request and payment of the fee set forth in 37 CFR 1.19(b)(3). 

1. A method for determining a benign or malignant state of a breast tumor in a biological sample from a subject, by determining a variation of expression of at least 12 determined genes belonging to a group of determined genes selected from the nucleotide sequences of SEQ ID NO: 5419 to SEQ ID NO: 5693 and at least one variant of each of said at least 12 determined genes, when said variants exist, said at least 12 genes being represented by the following nucleotide sequences: SEQ ID NOs 5421; 5423; 5432; 5434; 5486; 5491; 5525; 5552; 5599; 5652; 5654 and 5683, the method comprising: (1) contacting nucleic acid molecules obtained from said biological sample to a combination of 50 polynucleotide probe sets to allow formation of a nucleic acid complex, and detecting said formation; (2) determining a sample expression profile of said 12 genes and of variants of said 12 genes from the detection of the nucleic acid complexes; (3) comparing said sample expression profile with a reference expression profile of a control benign breast tumor, and/or a reference expression profile of a control malignant tumor, and (4) determining, from the comparison, that: (a) when said profile of expression is similar to the reference expression profile of a control benign breast tumor, then the breast cancer is benign, and (b) when said profile of expression is similar to the reference expression profile of a control malignant breast tumor, then the breast cancer is malignant, wherein, said 50 polynucleotide probe sets comprise: probe set #1 consisting of the nucleic acids consisting of SEQ ID NO: 333, 335 and 334; probe set #2 consisting of the nucleic acids consisting of SEQ ID NO: 364, 365 and 366; probe set #3 consisting of the nucleic acids consisting of SEQ ID NO: 364, 366 and 365; probe set #4 consisting of the nucleic acids consisting of SEQ ID NO: 312, 348 and 313; probe set #5 consisting of the nucleic acids consisting of SEQ ID NO: 312, 314 and 313; probe set #6 consisting of the nucleic acids consisting of SEQ ID NO: 171, 172 and 173; probe set #7 consisting of the nucleic acids consisting of SEQ ID NO: 315, 336 and 331; probe set #8 consisting of the nucleic acids consisting of SEQ ID NO: 1198, 1199 and 1200; probe set #9 consisting of the nucleic acids consisting of SEQ ID NO: 315, 317 and 316; probe set #10 consisting of the nucleic acids consisting of SEQ ID NO: 1522, 1523 and 1524; probe set #11 consisting of the nucleic acids consisting of SEQ ID NO: 339, 341 and 340; probe set #12 consisting of the nucleic acids consisting of SEQ ID NO: 353, 361 and 360; probe set #13 consisting of the nucleic acids consisting of SEQ ID NO: 1185, 1186 and 1194; probe set #14 consisting of the nucleic acids consisting of SEQ ID NO: 315, 370 and 316; probe set #15 consisting of the nucleic acids consisting of SEQ ID NO: 324, 326 and 325; probe set #16 consisting of the nucleic acids consisting of SEQ ID NO: 1165 and 1166; probe set #17 consisting of the nucleic acid consisting of SEQ ID NO: 177; probe set #18 consisting of the nucleic acids consisting of SEQ ID NO: 1551, 1552 and 1553; probe set #19 consisting of the nucleic acids consisting of SEQ ID NO: 315, 316 and 370; probe set #20 consisting of the nucleic acids consisting of SEQ ID NO: 1185, 1186 and 1194; probe set #21 consisting of the nucleic acids consisting of SEQ ID NO: 1523, 1524 and 1557; probe set #22 consisting of the nucleic acid consisting of SEQ ID NO: 1158; probe set #23 consisting of the nucleic acids consisting of SEQ ID NO: 345, 347 and 346; probe set #24 consisting of the nucleic acids consisting of SEQ ID NO: 367, 369 and 368; probe set #25 consisting of the nucleic acids consisting of SEQ ID NO: 315, 331 and 330; probe set #26 consisting of the nucleic acids consisting of SEQ ID NO: 327, 329 and 328; probe set #27 consisting of the nucleic acid consisting of SEQ ID NO: 1203; probe set #28 consisting of the nucleic acids consisting of SEQ ID NO: 1262, 1263 and 1264; probe set #29 consisting of the nucleic acids consisting of SEQ ID NO: 1534, 1535 and 1536; probe set #30 consisting of the nucleic acids consisting of SEQ ID NO: 2179, 2180 and 2181; probe set #31 consisting of the nucleic acids consisting of SEQ ID NO: 1159, 1160 and 1161; probe set #32 consisting of the nucleic acids consisting of SEQ ID NO: 327, 329 and 328; probe set #33 consisting of the nucleic acids consisting of SEQ ID NO: 157, 158 and 159; probe set #34 consisting of the nucleic acids consisting of SEQ ID NO: 1267, 1268 and 1269; probe set #35 consisting of the nucleic acids consisting of SEQ ID NO: 167, 168 and 169; probe set #36 consisting of the nucleic acids consisting of SEQ ID NO: 167, 168 and 177; probe set #37 consisting of the nucleic acids consisting of SEQ ID NO: 1167, 1168 and 1169; probe set #38 consisting of the nucleic acids consisting of SEQ ID NO: 1544, 1545 and 1546; probe set #39 consisting of the nucleic acids consisting of SEQ ID NO: 969, 972 and 981; probe set #40 consisting of the nucleic acids consisting of SEQ ID NO: 1162, 1170 and 1171; probe set #41 consisting of the nucleic acids consisting of SEQ ID NO: 790, 791 and 792; probe set #42 consisting of the nucleic acids consisting of SEQ ID NO: 368, 374 and 375; probe set #43 consisting of the nucleic acids consisting of SEQ ID NO: 1551, 1552 and 1553; probe set #44 consisting of the nucleic acids consisting of SEQ ID NO: 1554, 1555 and 1556; probe set #45 consisting of the nucleic acids consisting of SEQ ID NO: 2026, 2027 and 2028; probe set #46 consisting of the nucleic acids consisting of SEQ ID NO: 1081, 1082 and 1083; probe set #47 consisting of the nucleic acids consisting of SEQ ID NO: 1129, 1140 and 1141; probe set #48 consisting of the nucleic acids consisting of SEQ ID NO: 1519, 1520 and 1521; probe set #49 consisting of the nucleic acids consisting of SEQ ID NO: 136, 137 and 138; and probe set #50 consisting of the nucleic acids consisting of SEQ ID NO: 793, 794 and 795, as specified as probe set #1 to probe set #50 in Table
 7. 2. The method according to claim 1, comprising determining the variation of expression of: at least 20 determined genes belonging to a group of determined genes selected from the nucleotide sequences of SEQ ID NO: 5419 to SEQ ID NO: 5693, and at least one variant of each of said at least 20 determined genes, when said variants exist, said at least 20 determined genes being represented by the following nucleotide sequences: SEQ ID Nos 5421; 5423; 5432; 5434; 5457; 5486; 5491; 5513; 5516; 5525; 5532; 5552; 5599; 5616; 5624; 5643; 5652; 5654; 5673 and 5683, said method comprising: (1) contacting the nucleic acid molecules obtained from said biological sample to a combination of at least 100 polynucleotide probe sets to allow the formation of the nucleic acid complex, wherein said 100 polynucleotide probe sets comprise probe set #1 to probe set #100 as specified in Table
 7. 3. The method according to claim 1, comprising determining the variation of expression of: at least 35 determined genes belonging to a group of determined genes selected from the nucleotide sequences of SEQ ID NO: 5419 to SEQ ID NO: 5693, and at least one variant of each of said at least 35 determined genes, when said variants exist, said at least 35 determined genes being represented by the following nucleotide sequences: SEQ ID Nos 5421; 5423; 5431; 5432; 5434; 5440; 5457; 5462; 5470; 5486; 5491; 5505; 5513; 5516; 5525; 5532; 5546; 5552; 5594; 5599; 5601; 5603; 5616; 5618; 5624; 5627; 5630; 5643; 5645; 5652; 5654; 5660; 5669; 5673 and 5683, said method comprising: (1) contacting the nucleic acid molecules obtained from said biological sample to a combination of at least 150 polynucleotide probe sets to allow the formation of the nucleic acid complex, wherein said 150 polynucleotide probe sets comprise probe set #1 to probe set #150 as specified in Table
 7. 4. The method according to claim 1, comprising determining the variation of expression of: at least 43 determined genes belonging to a group of determined genes selected from the nucleotide sequences of SEQ ID NO: 5419 to SEQ ID NO: 5693, and at least one variant of each of said at least 43 determined genes, when said variants exist, said at least 43 determined genes being represented by the following nucleotide sequences: SEQ ID Nos 5421; 5423; 5431; 5432; 5434; 5440; 5455; 5457; 5462; 5470; 5475; 5486; 5491; 5499; 5505; 5513; 5516; 5520; 5525; 5532; 5546; 5549; 5552; 5594; 5599; 5601; 5603; 5616; 5618; 5623; 5624; 5627; 5630; 5643; 5645; 5651; 5652; 5654; 5660; 5669; 5673; 5683 and 5686, said method comprising: (1) contacting the nucleic acid molecules obtained from said biological sample to a combination of at least 200 polynucleotide probe sets to allow the formation of the nucleic acid complex, wherein said 200 polynucleotide probe sets comprise probe set #1 to probe set #200 as specified in Table
 7. 5. The method according to claim 1, comprising determining the variation of expression of: at least 206 determined genes belonging to a group of determined genes selected from the nucleotide sequences of SEQ ID NO: 5419 to SEQ ID NO: 5693, and at least one variant of each of said at least 206 determined genes, when said variants exist, said at least 206 determined genes being represented by the following nucleotide sequences: SEQ ID Nos 5420; 5421; 5422; 5423; 5425; 5426; 5427; 5428; 5429; 5430; 5431; 5432; 5434; 5435; 5436; 5437; 5438; 5439; 5440; 5441; 5442; 5443; 5444; 5445; 5446; 5447; 5449; 5450; 5451; 5452; 5453; 5454; 5455; 5456; 5457; 5459; 5460; 5461; 5462; 5463; 5465; 5467; 5468; 5470; 5473; 5475; 5476; 5479; 5480; 5482; 5484; 5485; 5486; 5487; 5488; 5489; 5490; 5491; 5492; 5493; 5495; 5496; 5497; 5498; 5499; 5502; 5503; 5505; 5506; 5507; 5508; 5509; 5511; 5512; 5513; 5515; 5516; 5517; 5518; 5519; 5520; 5523; 5524; 5525; 5526; 5528; 5529; 5530; 5531; 5532; 5533; 5534; 5536; 5538; 5539; 5540; 5543; 5544; 5545; 5546; 5547; 5549; 5550; 5552; 5553; 5554; 5556; 5558; 5559; 5560; 5562; 5563; 5564; 5565; 5566; 5567; 5568; 5569; 5570; 5571; 5573; 5574; 5575; 5576; 5577; 5578; 5581; 5582; 5585; 5587; 5588; 5590; 5591; 5593; 5594; 5595; 5597; 5598; 5599; 5600; 5601; 5602; 5603; 5604; 5605; 5606; 5608; 5609; 5610; 5611; 5612; 5613; 5615; 5616; 5617; 5618; 5622; 5623; 5624; 5625; 5627; 5629; 5630; 5631; 5632; 5633; 5634; 5635; 5637; 5638; 5639; 5640; 5641; 5642; 5643; 5644; 5645; 5647; 5648; 5649; 5651; 5652; 5653; 5654; 5656; 5657; 5658; 5660; 5661; 5665; 5667; 5669; 5672; 5673; 5675; 5676; 5677; 5678; 5680; 5681; 5683; 5684; 5686; 5687; 5689 and 5692, said method comprising: (1) contacting the nucleic acid molecules obtained from said biological sample to a combination of at least 1228 polynucleotide probe sets to allow the formation of the nucleic acid complex, wherein said 1228 polynucleotide probe sets comprise probe set #1 to probe set #1228 as specified in Table
 7. 6. The method according to claim 1, comprising determining the variation of expression of: at least 275 determined genes belonging to a group of determined genes selected from the nucleotide sequences of SEQ ID NO: 5419 to SEQ ID NO: 5693, and at least one variant of each of said at least 275 determined genes, when said variants exist, said method comprising: (1) contacting the nucleic acid molecules obtained from said biological sample to a combination of at least 1640 polynucleotide probe sets to allow the formation of the nucleic acid complex, wherein said 1640 polynucleotide probe sets comprise probe set #1 to probe set #1640 as specified in Table
 7. 7. The method according to claim 1, wherein determining the variation of expression comprises, determining an over representation or an under representation for each of said at least 12 determined genes and at least one variant of each of said at least 12 determined genes when said variants exist.
 8. The method according to claim 1, wherein the nucleic acid molecules obtained from said biological sample are mRNA or cDNA prepared from said mRNA, the mRNA resulting from the expression of the genes represented by the nucleotide sequences of SEQ ID NO: 5419 to SEQ ID NO: 5693, and/or at least one of said variants when present represented by the nucleotide sequences of SEQ ID NO: 4579 to SEQ ID NO: 5418 and SEQ ID NO:
 5694. 9. The method according to claim 1, wherein the 50 polynucleotide probe sets are arranged in a microarray. 